LOC110501288 (LOC106581686)


Basic Information

Item Value
gene id LOC110501288
gene name LOC106581686
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 6082380 ~ 6226566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578736.2
CTGCTGGTGGGCGCAACGCGGATTCCAGAGAAATGAGGAGGCGAGCGCAACAGACAGACTCACTGCGCGTCTGAACACAACTACGAGGGGAGCGCTTGTCAAGGAAGCCCGTGACATTTCTGGATATTACTAGGACGTATCCGTATCGAAACCGAGTGATATAAACAGTATTTGTTTCAATTCCTTCCACCAACCCCTTTTTCCCATCTTTATTTTCTCTCCTCATCGTTGAGCATCCTTCCTCTACCTGCCTGCCCGTCCTCTTTCACTGGTTTACCTGGCTAACTTTCCCCTTGACAACATCCCACACACCCTCCATTGCCCGCCCCCTCCCCCCACCAGACCTTTTCACTCGAACCCCCTTCATATTGTAGCTGCGCCACCTCGAATCGGGCGGAACCCGTTGGTTACTCTACAGCACTTAATGGGGCACGCTTTCTTGCACGGAAGATGTCCCTTTCTTGGTCACTGAGCGCCCCGGTGAAACAGCCAACGTCTGGACCGGAGTTGTTGGTGCGTGTCTGCCTCTTTTGCCCAGCTCGCTTGTGTTGTCGGGGTGCGCCGCTGAACTGAGATGGGTCTATCGGTGGCGGCGGCGGCACTACAGGAGCCCCGACGCCCGCACCAGTGGAGCCGGACAGTAGGAGATTGGGTCTGGATCACCGTCGTTTCGTTTTTAGCCACTTTACCTGTAGAGCAACTTTGCGCTTTCCCGTCATCCCTCAGCGACTGTCAGACGCCTACCGGCTGGAACTGCTCTGGTTTTGATGACCGGGACACAGACCTCTTTTTGTGTGACACCAACACCTGCAAGTTTGACGGAGAGTGTCTGAGAATTGGAGAGACAGTGACGTGCATCTGCAACTTCAAGTGTAACAATGACTACGTCCCAGTGTGTGGCTCCAACAATGAGAACTACCAGAACGAGTGTTATCTACGCAGGGACGCCTGTAAGCAGCAGTCTGAAGTGCTGGTGGTGTCAGAGGGCTCTTGTCCTGTCGatgcCGGGTCAGGCTCGGGAGATGACGGAGGTGAGGGGTCGGCGGAGACTGGGCAGAAGGAAACGTCCACCTGTGACATATGCCAGTTTGGGGCGGAGTGCGATGTGGACGCTGAGGATGTATGGTGTGTGTGTAACATCGACTGCTCCCACATCAGCTTCAACCCAGTTTGCGCCTCGGATGGCCATTCCTATGACAACCCCTGCCAGGTGAAGGAGGAGTCGTGTCAGAAGCAGGAGCGGATCGAGGTCAAATACCTGGGCCACTGCCAAGGTGACATCATGACAGGGACCAAAGCCGGAGACGGACACTATGCCAGGAAAGATTACTCAGaAGAGAAGCcggaccagagaggagaggtggccaTAGGCTTGTACATCCCCTGTCCTGAGCACTACAAGAACTACTGTGTCCACGGAGAGTGTGAATATCCCAACATACTGTCTGTGCCATCCTGCAGCTGTCACTCAGGCTTCAGCGGGCCCCAGTGTGAAACTAAGGAGTACAATGTGCTCTACGTGGTCCCCGGCTCTGGCAAGCTGCGCTACGTCCTCATCGCCTCCATCATCGGAGCTCTGCAGGTGGCCATCATCTGTGTGGTGGTGCTCTGTATTAccagGAAGTGCCCGCGGAGCAACAGGGTCAATCGGCAGAAGCAGAATGCCACCCACTACAGCTCGGAGAACACCATGCGCGCCTCCACCCGCCTCATCTGACTGAGCCGCCCCGTGATGGGGGAAA
>TU2026736
cctactgtacctctctcctctGCATAGGGGATTAGCGATTAGCAGTTAGTGCTCTCAGCCCCCTGTGAGCCCCATTCAGTTAGCTACAGTGCTACAGTGCTGACCGAGACCCTTCTCTAAAGACCAACAGTGTGGGGAGACAGAGATTGGACAATGATAGGATTAGTCAGGGAGTCAGTGGGGTACTGGCTGGCACCAGCTGGGGTGTTATAGCCTGGCACGGGGATGGGTGTGGGCTGGAAGATTGCCTTTTCTGCCTTGGTTGTAGAAACAAGGAGGGGCAACAAGAAGATAGGAGGGGCACCGCTGTGCTAAGTATCACGCAAGTAGGGAAGAAGgGAGGTGAGGGGTCGGCGGAGACTGGGCAGAAGGAAACGTCCACCTGTGACATATGCCAGTTTGGGGCGGAGTGCGATGTGGACGCTGAGGATGTATGGTGTGTGTGTAACATCGACTGCTCCCACATCAGCTTCAACCCAGTTTGCGCCTCGGATGGCCATTCCTATGACAACCCCTGCCAGGTGAAGGAGGAGTCGTGTCAGAAGCAGGAGCGGATCGAGGTCAAATACCTGGGCCACTGCCAAGGTGACATCATGACAGGGACCAAAGCCGGAGACGGACACTATGCCAGGAAAGATTACTCAGaAGAGAAGCcggaccagagaggagaggtggccaTAGGCTTGTACATCCCCTGTCCTGAGCACTACAAGAACTACTGTGTCCACGGAGAGTGTGAATATCCCAACATACTGTCTGTGCCATCCTGCAGGTATGCACACACAGGCCTACACACGGACGCATATGTGTGGACACACATCCCAGTACATAGTGACCAGTGTTGGGGTCGTTACTCCAAAAAAGTttgatatttaagcaataaggcatgagaacCCGGAGATTATCGTGTGATAACTCCCTACTTAGGGCTGATCTTAGGCCCAAGGCTAAGCTTTTTTTAAAATGGTTGCCAACATATTTGAAAAGATTAACAACATGTTTTCATTGAAAACATTAATTTAGTGAGAACATTTGTTGAAATGGAATTATGGCATTATGTCGTCATGGCAGTTTGCAGGGATTATCGTGAATACCTGACTTAAAATCTTGTAGGGGGCTTGGGCTAATGCACCTACATGTGTGAAGTAGGATTTAAAAAATGGATACAATTGATATTTGGGTACAGGACTTGTGTCCTAACATTCTGGTTCTCCGGGAAACATGGTGAAATGGTACTGTATTTGATAAGACATTGAAGTAAATGATTATAATGTAGTTAGATGTGGCAGATTACAGAAAGGCGGAAGAGTGGCCATATATGTAAAATCTAATTCCATGGCGTCCCAATCTTTAAATATTTCTGTTCCCAAGAAATTTGAGCTCCTGGTTGTAGATGTGTCCATAAACCAGAATAAACATGTATTTGTTACTGGGATTTACCGCCCCTCTGCTGCCATGGTTGATGCTATTGGTGATATATCCGAGTGTTTAACGCCTTTTTTGTCCTCAGAGTTGTCCtcacttaagtagtactttcaccCTCCCGCTGTGTTCCGGTCGAATTGGACCGACTTACAAGTTTTCTCTCTAAAAAGTTCTTATtgttttaatctgattgtcataagggtccacacagggcatctgaccACACAAAATTACATTTAGAtaattttcattacattttgggtgttttatttaatttttgtACACCTGTGGCGTTCCCGGTCAAAAATtaccggtcattagaaatgaatgggtgagactacaattagtgtataaaattgagttcaggcacatctctgctcatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578736.2 False 1742 mRNA 0.56 10 6082380 6226566
TU2026736 True 1808 lncRNA 0.46 5 6092592 6119872

Neighbor

gene id symbol gene type direction distance location
LOC110501287 LOC106581685 coding downstream 40191 6018678 ~ 6042189 (-)
LOC110502106 NA coding downstream 68734 6003661 ~ 6014297 (-)
trnas-cga-33 NA coding downstream 86733 5995566 ~ 5995647 (-)
nabp1a LOC106581684 coding downstream 87369 5970414 ~ 5995011 (-)
LOC110501285 LOC106581661 coding downstream 113835 5963937 ~ 5968545 (-)
LOC118943629 NA coding upstream 627520 6854086 ~ 6855433 (-)
slc39a10 slc39a10 coding upstream 877011 7103577 ~ 7168382 (-)
LOC110501290 LOC106581993 coding upstream 1097031 7323597 ~ 7326019 (-)
LOC110502040 NA coding upstream 1112661 7339227 ~ 7346841 (-)
LOC110501291 tri13 coding upstream 1194738 7421304 ~ 7423921 (-)
G1769650 NA non-coding downstream 24227 6057934 ~ 6058153 (-)
G1769613 NA non-coding downstream 120084 5961640 ~ 5962296 (-)
G1769614 NA non-coding downstream 120933 5961028 ~ 5961447 (-)
G1769609 NA non-coding downstream 123565 5958597 ~ 5958815 (-)
G1769840 NA non-coding upstream 67724 6294290 ~ 6294596 (-)
G1769848 NA non-coding upstream 73608 6300174 ~ 6300390 (-)
G1769889 NA non-coding upstream 111355 6337921 ~ 6338239 (-)
G1769906 NA non-coding upstream 118717 6345283 ~ 6345496 (-)
G1769935 NA non-coding upstream 141288 6367854 ~ 6368061 (-)
G1769618 NA other downstream 121565 5960150 ~ 5960815 (-)
G1769281 NA other downstream 257073 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 2308371 3447431 ~ 3774567 (-)
G1766126 NA other downstream 2756037 3325721 ~ 3326343 (-)
klf5b LOC106586047 other downstream 4654660 1420358 ~ 1428026 (-)
G1771092 NA other upstream 1025218 7251784 ~ 7256717 (-)
G1771426 LOC106582012 other upstream 1235647 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 2398456 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 other upstream 2510613 8737175 ~ 8758540 (-)
LOC110502107 grk1 other upstream 2536726 8763292 ~ 8768047 (-)
G1769689 NA non-coding upstream 18788 6138660 ~ 6176150 (-)

Expression


Co-expression Network