LOC110501290 (LOC106581993)


Basic Information

Item Value
gene id LOC110501290
gene name LOC106581993
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7323597 ~ 7326019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578741.2
CTCACACTGCTCTATGGTACTGCACTGGCTTGGTACAATAGACCTGGACACACTGGAGACACTGACATGAATAGAGCGAGGAGAGGAGCACACATCCAACTCAGAGCAACAGTTGGTGGACTGCATGACTGCTTGAAGAGTGTTACGTCATTTGACGTGTTGCATCGTTTGAATTTGAAGCCATGCTGTGTGAGAGCATACTATGGAGCATGACCTACTGTAGTGACCAGGAGAGCCTGGACCCTCTCCCCCCTGTGATAGAGCCCCCCACGAGTAGTGTCAGGGCTGGCTCACAGCCGGTTAAAGCCGCCCCGCTCTTCACACTCCAGGCCTCTCCAGACCAGCCAAGCAGAAAGGGCCACTCCATCCTGCCTAGAGTGGCCCAAGACGAGAGGCCCTACCGGGTGAGTGCCCAAATCCAGCCCCAGGGTTCTTCTCTACAGCAGGCCTTGCATTCCCAGAGGCCCCATCCTGGCAGACACATTTCCCCAGAGATGGAAATCCCTGGGCAGGCTCGTTCTGGTGGTGACGTCCCTTTCCTGGTGCCCTCTTCCTGCCAGAGCATCTGTCAGAACTACAGCGACCTCCACATCGGGGGGGACCAGGTGCTGCCTCTTTCGGATCACGATGGGGAGCTCCTGCCCTGCAGCGATACCCTGGCCGACGGCCCCTTCCTCTATTCCTGTGACGTCCTCCCAGCCGCAGATGACTCTCCCCCAGATCGGGCCTCTGAAGACAGGCCACTGCATCCTCTCCAGGTGGGCTCAGGCTTGGGATCCTCCCGCTGGAGGGCGGGGAGCGGCCGCGACCGGAGCTTCCTCCTCCAGGGGTGTGAGGGGCCCCTCTCCAACTCACTGCTCAACCGCTACCTGGAGCACAAGCTACTGGACCTGTACCAGCAGTACATGCTGGAGAGCATGGCCCGGGAAGGGGGTTGTAATGAGGGTTTCCCCAGCCACCTGCTGGCTTCAGAGCTGCTTCTTACCAGCCTGGATCAGATCACGTTGCAGCTGAGCCGTGAGGGCCACCTAGAAGCGGGCCGGGCCAAAGACATGGTGCTCAGCTGCCTGCTGAGGGTGGCCAGCGGCCTGCAGTCCAGTGAGATCAGTACTCCCCTGCTCCAGATCTCAACTGACCTGCAGCTCtccactgctactactgctgctgctactgctgctgctactgttactactgctgttactgctgctactactactgttgctgttactgctgctactgttactactgctgttactactgttactgttgctgctgcttctacttctactactactgctgctggtgctggtgctggtgctggGGGCCTAGGAGTACCTCAGGGACCGCTCAACTTCACCACTGACCCCCCAGTTAAAGACATcctttgacccctgacccctgaaaCAACTGCACTCAGAAACCGTCTTGTTACGGAGGTCCAACCAACTTGACTCAGCCCCCCCCTCCAGTACTAGACAGTTTCACTGTCCCCCTAGTTTTAAAAAATAGCCTCTGAACAGGGAAGGACCAGGAGGGAGTGTGTGCAGCTATGTTTTTAACCCTAATGGAAAATGTAAATTGTTGCTACCTTTCCTACTTTGGTATTACCTTCACTCAGACTCTGTCTATCCTCTCAGTTCCCCCTACACACTGTTCTCTTATGACGAAACGAGACCGCTTTCAAATAGCTGCAGTGATATAATATCCATAATGAGGTGGAACACAGTGGTGGAGAATGAAGACGTCTGTACTGTTGTCATGTTTTCATGAAGAGAACATGACATTCTATCTAATGTTTTTATCTTGTTTTATTGTCTGTGAAAAATCAATAAACATGTTGATCACACAAATGTCAGTTACTCTGATACGGATCCCA

Function

NR:

description
uncharacterized protein CXorf21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578741.2 True 1876 mRNA 0.54 2 7323597 7326019

Neighbor

gene id symbol gene type direction distance location
slc39a10 slc39a10 coding downstream 155215 7103577 ~ 7168382 (-)
LOC118943629 NA coding downstream 468164 6854086 ~ 6855433 (-)
LOC110501288 LOC106581686 coding downstream 1097031 6082380 ~ 6226566 (-)
LOC110501287 LOC106581685 coding downstream 1281408 6018678 ~ 6042189 (-)
LOC110502106 NA coding downstream 1309951 6003661 ~ 6014297 (-)
LOC110502040 NA coding upstream 13208 7339227 ~ 7346841 (-)
LOC110501291 tri13 coding upstream 95285 7421304 ~ 7423921 (-)
LOC110501292 NA coding upstream 103708 7429727 ~ 7436795 (-)
phf11 LOC106582016 coding upstream 164852 7490871 ~ 7499919 (-)
LOC110501297 LOC106582017 coding upstream 191394 7517413 ~ 7525380 (-)
G1771123 NA non-coding downstream 17105 7306098 ~ 7306492 (-)
G1771107 NA non-coding downstream 27807 7289435 ~ 7295790 (-)
G1771096 NA non-coding downstream 54488 7266420 ~ 7269109 (-)
G1770941 NA non-coding downstream 300915 7022472 ~ 7022682 (-)
G1770931 NA non-coding downstream 316346 7006871 ~ 7007251 (-)
G1771196 NA non-coding upstream 47972 7373991 ~ 7374296 (-)
G1771197 NA non-coding upstream 48846 7374865 ~ 7375186 (-)
G1771370 NA non-coding upstream 72098 7398117 ~ 7398525 (-)
G1771372 NA non-coding upstream 73943 7399962 ~ 7400192 (-)
G1771374 NA non-coding upstream 75987 7402006 ~ 7402350 (-)
G1771092 NA other downstream 66880 7251784 ~ 7256717 (-)
G1769618 NA other downstream 1362782 5960150 ~ 5960815 (-)
G1769281 NA other downstream 1498290 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 3549588 3447431 ~ 3774567 (-)
G1766126 NA other downstream 3997254 3325721 ~ 3326343 (-)
G1771426 LOC106582012 other upstream 136194 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 1299003 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 other upstream 1411160 8737175 ~ 8758540 (-)
LOC110502107 grk1 other upstream 1437273 8763292 ~ 8768047 (-)
gpr161a gpr161 other upstream 1732957 9044945 ~ 9063520 (-)

Expression


Co-expression Network