LOC110502040


Basic Information

Item Value
gene id LOC110502040
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7339227 ~ 7346841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502040
ATGGCAGTGTGGGAccggaacaacaacctctccctcaacGCAAAGTTCCAGTCGGTGTACCAGATGGTGATGGACGAGGACTTCCCAGCATGCACCAGGCTGCTGAGCTGCACGCACTCCCTGGCCTCCATGCACCACGTGGCTGAGGaaaaaggtcagagGTGTTATACGTGTCACCGCTACTGCCTGGAAAGGACCATGGAAGGGTTAAAGAAGAAGGCTGAGAGGACAGTGAAGGCCCTCGGAAAGACTAACATCTCAGTGGGAGAAAGGGTGAAGTCCATGACGTACGTCAGAGTCTAGAAGGAGTCAGAGACCCAGGAAGAGGACTACCTGCAGTATGCCCGTGGTCTGATATCTGCGGACATCAGTGAAGACCTGAGAAAAGCTCTCCTCAAGcatctacaGTTACCTGAGCTCTCAAGCACTAAGAAAGTGGAGCATCATTCAAAGAAGTGAAAGCTGTCTGACAAATCAGTGGAGGCGGGAGAGGACTACACCAAATTCAACAGCTCCGATTTCGCCCGCAAACCGCCCTAGAAGATGAGTGCGGCACAGAAGATCCTGGCCAAGGTGGACAAAACAGGCATGAAAAGCATGTCTGCCTTCTTCAGCCCCAAGGGCAAAGCAGAGAAACTGATTGTTAGGATGGTGCATCAGaatttgtatgtgtatgttggTGTGCGtggatacactgagtgtacaaaacattaggaacacctgctctttccatgacatagactgaccaggtgaaagctatgatcccttattgatgtttaTTATtgattgttaaatccacttcaatcagtgtaaataaaggggaggagacaggttaaagaaggatttttaagccttgtgaCCATTGAGACATGCATTGtctatatgtgccattcagagggtgaatgtgcaagacaaacTATTGAAGTGCCTTTCAATGgagtatggtagtaagtgccaggcacactggtttgagtgtgtcaagaactgcaacgctgctgggtttttcatgctcaacagtttcctgtgtgtgtcaagaatggtccaccacccaaaggacagccagccaacttgacacaactgtgggaagcgttggagtcaacatgggccagcattcctgtgaaatgctttcgacaccttgtggagttcatgccccgacgaatttAAGCAGTTCTGAGGGAAAAGGGGGGtgtcaactcaatattaggaaggtgttcctaatgttatttacactcagtgtaccttgtgtgtgtgtttgtgcgcacaTTTGTGCCTTTAGTAATAaagaaaataaaattgtatttttgagAGAAACAGATCTGTAGCAAGGTGATTTGAACTTGCCTTGAGAAACTGGGTTGATTCACACTAGTTGTGAGAATAAGAGGATAAAAAACAAGAACATGAATAGCTATTACTTCAAGGTTTGGGGGGAGTATATAAAGTAAATGATGTTTAAACTCCCtccaggtagcctagaggttagagctttgggccagtaaccgaaaggttgctggattgaatcctcgagctgacaaggttaaaataTGTCGTT

Function

NR:

description
ribonuclease H2 subunit B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502040 True 1552 mRNA 0.46 8 7339227 7346841

Neighbor

gene id symbol gene type direction distance location
LOC110501290 LOC106581993 coding downstream 13208 7323597 ~ 7326019 (-)
slc39a10 slc39a10 coding downstream 170845 7103577 ~ 7168382 (-)
LOC118943629 NA coding downstream 483794 6854086 ~ 6855433 (-)
LOC110501288 LOC106581686 coding downstream 1112661 6082380 ~ 6226566 (-)
LOC110501287 LOC106581685 coding downstream 1297038 6018678 ~ 6042189 (-)
LOC110501291 tri13 coding upstream 74463 7421304 ~ 7423921 (-)
LOC110501292 NA coding upstream 82886 7429727 ~ 7436795 (-)
phf11 LOC106582016 coding upstream 144030 7490871 ~ 7499919 (-)
LOC110501297 LOC106582017 coding upstream 170572 7517413 ~ 7525380 (-)
LOC110501299 LOC106582019 coding upstream 179417 7526258 ~ 7597443 (-)
G1771123 NA non-coding downstream 32735 7306098 ~ 7306492 (-)
G1771107 NA non-coding downstream 43437 7289435 ~ 7295790 (-)
G1771096 NA non-coding downstream 70118 7266420 ~ 7269109 (-)
G1770941 NA non-coding downstream 316545 7022472 ~ 7022682 (-)
G1770931 NA non-coding downstream 331976 7006871 ~ 7007251 (-)
G1771196 NA non-coding upstream 27150 7373991 ~ 7374296 (-)
G1771197 NA non-coding upstream 28024 7374865 ~ 7375186 (-)
G1771370 NA non-coding upstream 51276 7398117 ~ 7398525 (-)
G1771372 NA non-coding upstream 53121 7399962 ~ 7400192 (-)
G1771374 NA non-coding upstream 55165 7402006 ~ 7402350 (-)
G1771092 NA other downstream 82510 7251784 ~ 7256717 (-)
G1769618 NA other downstream 1378412 5960150 ~ 5960815 (-)
G1769281 NA other downstream 1513920 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 3565218 3447431 ~ 3774567 (-)
G1766126 NA other downstream 4012884 3325721 ~ 3326343 (-)
G1771426 LOC106582012 other upstream 115372 7462213 ~ 7464692 (-)
LOC110501323 LOC106581977 other upstream 1278181 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 other upstream 1390338 8737175 ~ 8758540 (-)
LOC110502107 grk1 other upstream 1416451 8763292 ~ 8768047 (-)
gpr161a gpr161 other upstream 1712135 9044945 ~ 9063520 (-)

Expression


Co-expression Network