mrpl30 (mrpl30)


Basic Information

Item Value
gene id mrpl30
gene name mrpl30
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 7992285 ~ 7996860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578785.2
ATACTGACGGCTTCCGGTGAGTGTCACTTGTCAACCAACAAGTAAATATGGCTATGCTATGTCGTGGTCTTCACATATCTTCCCCAATTCAGGCTTTAACAGAAACTACGCCCCTGCCTTGGTTAATTTCATTCCGAAGCAAGTTCACCAAAGCACGGATCCCACAAGAGATTCTGGAAGAGCGGTCTCAAGAGCATGAGAAGTATGGTGGAAACCAGGAGCAGCCCCATAAGCTGCACGTGGTGACGCGGGTCAAGAGCACCATGCGCCGGCCCTACTGGGAGAAGAAGCTAGTGGAGGGACTCTGCTTGCAGAAGGCGTATGTACCTGTAATTCACAAGAACATCCCTTCAGTCAACAACCAGCTGAAATTCATCAAGCATCTTGTGAGGATCCAGCCACTGAAGCTTCCCCATGGTCTCCCTGCTGAGGAAGACATGGCCGACACCTACCTGAACAGCAAAGGAGAGCTGATCGTACGACGCCTCCTCAAACCTGTAGAGTCCAAAGCCATCGAGTCATAGCCAACACTACTCTATACCCAAGCCATTTTGTCAGTGGTTCTGTTTGAATACTGAAAATGCATTCTCCCTTCCTCAAAGTAATCACTGACATGACTGGATTGGCTGTGTAGTGGATCCCATGCTTTCACCTATCCAATCTGTATAGAACACAAATTAATGGTTTTACAGTCTGGTCTACCAGAAATCAGCTGTGATTCAAATTACTATATTAGTGAAATCCCTGTACCTGTGTTCATTCTAGACCGAGAAACACTTCTATAGCTCACCCCTTTGTATTATATTtcaaataaaaacataacatGTACATGTTAA
>XM_021578786.2
GGCAACGTTAGTAAGTGACTGCTATACTGACGGCTTCCGACTTGTCAACCAACAAGTAAATATGGCTATGCTATGTCGTGGTCTTCACATATCTTCCCCAATTCAGGCTTTAACAGAAACTACGCCCCTGCCTTGGTTAATTTCATTCCGAAGCAAGTTCACCAAAGCACGGATCCCACAAGAGATTCTGGAAGAGCGGTCTCAAGAGCATGAGAAGTATGGTGGAAACCAGGAGCAGCCCCATAAGCTGCACGTGGTGACGCGGGTCAAGAGCACCATGCGCCGGCCCTACTGGGAGAAGAAGCTAGTGGAGGGACTCTGCTTGCAGAAGGCGTATGTACCTGTAATTCACAAGAACATCCCTTCAGTCAACAACCAGCTGAAATTCATCAAGCATCTTGTGAGGATCCAGCCACTGAAGCTTCCCCATGGTCTCCCTGCTGAGGAAGACATGGCCGACACCTACCTGAACAGCAAAGGAGAGCTGATCGTACGACGCCTCCTCAAACCTGTAGAGTCCAAAGCCATCGAGTCATAGCCAACACTACTCTATACCCAAGCCATTTTGTCAGTGGTTCTGTTTGAATACTGAAAATGCATTCTCCCTTCCTCAAAGTAATCACTGACATGACTGGATTGGCTGTGTAGTGGATCCCATGCTTTCACCTATCCAATCTGTATAGAACACAAATTAATGGTTTTACAGTCTGGTCTACCAGAAATCAGCTGTGATTCAAATTACTATATTAGTGAAATCCCTGTACCTGTGTTCATTCTAGACCGAGAAACACTTCTATAGCTCACCCCTTTGTATTATATTtcaaataaaaacataacatGTACATGTTAA

Function

symbol description
mrpl30 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of large ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPL30 (mitochondrial ribosomal protein L30).

NR:

description
39S ribosomal protein L30, mitochondrial

GO: NA

KEGG:

id description
K02907 RP-L30, MRPL30, rpmD; large subunit ribosomal protein L30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578785.2 False 836 mRNA 0.46 6 7992285 7996837
XM_021578786.2 True 850 mRNA 0.46 6 7992285 7996860

Neighbor

gene id symbol gene type direction distance location
arhgef7a LOC106582025 coding downstream 87190 7791322 ~ 7905095 (-)
LOC110501302 LOC106582022 coding downstream 255486 7719470 ~ 7736799 (-)
LOC110501300 LOC106582021 coding downstream 323661 7608184 ~ 7668624 (-)
LOC110501299 LOC106582019 coding downstream 394842 7526258 ~ 7597443 (-)
LOC110501297 LOC106582017 coding downstream 466905 7517413 ~ 7525380 (-)
si:dkey-4e7.3 LOC106582031 coding upstream 86957 8083817 ~ 8092866 (-)
inpp4aa LOC106586779 coding upstream 103885 8100745 ~ 8159515 (-)
mfsd9 mfsd9 coding upstream 165216 8162076 ~ 8173878 (-)
LOC110501321 fhl2 coding upstream 298021 8294881 ~ 8310469 (-)
LOC110502043 LOC106581982 coding upstream 446747 8443607 ~ 8492893 (-)
G1771942 NA non-coding downstream 5575 7986492 ~ 7986710 (-)
G1771935 NA non-coding downstream 36629 7955447 ~ 7955656 (-)
G1771891 NA non-coding downstream 94181 7897837 ~ 7898104 (-)
G1771795 NA non-coding downstream 124363 7789498 ~ 7867922 (-)
G1771829 NA non-coding downstream 211699 7780117 ~ 7780586 (-)
G1771961 NA non-coding upstream 20193 8017053 ~ 8076548 (-)
G1771993 NA non-coding upstream 83392 8080252 ~ 8080793 (-)
G1771994 NA non-coding upstream 84035 8080895 ~ 8081198 (-)
G1771995 NA non-coding upstream 84451 8081311 ~ 8081929 (-)
G1771999 NA non-coding upstream 96507 8093367 ~ 8093626 (-)
G1771426 LOC106582012 other downstream 527593 7462213 ~ 7464692 (-)
G1771092 NA other downstream 735568 7251784 ~ 7256717 (-)
G1769618 NA other downstream 2031470 5960150 ~ 5960815 (-)
G1769281 NA other downstream 2166978 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 4218276 3447431 ~ 3774567 (-)
LOC110501323 LOC106581977 other upstream 628162 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 other upstream 740319 8737175 ~ 8758540 (-)
LOC110502107 grk1 other upstream 766432 8763292 ~ 8768047 (-)
gpr161a gpr161 other upstream 1062116 9044945 ~ 9063520 (-)
G1774133 NA other upstream 1104892 9101752 ~ 9123249 (-)

Expression


Co-expression Network