LOC110501325 (LOC106581976)


Basic Information

Item Value
gene id LOC110501325
gene name LOC106581976
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8737175 ~ 8758540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578804.2
CAGACGCGTGTGTCGTGGTGAGCGCGCGCCTGAGTATCTCCGCTCGATGAAATGGTATCCATCGGGAGCGCGCACATAGAAAACTTCAAGAACTTCTGAACGTCTAGAAATGTTTCAGTCTTGTCTGGAGCGAACGTTCTCAGACACTCAAATATCTTTCTAGGTTATTTAAATTCACTGGACACTGTTTACTCGTTTGGAAGAACTATGGACAGCATGGGGATTTTGTCTCTTATCTTCCTCGTCTTGTTGCAGAgtcctgcctccctctctctgacagtgAGCACCAGTAAGGCCAAAGTGGTGGTCCATGAGAACACAGACGCTGTGCTGTCCTGTCAGTTCAAGACAGAGAAGGAGACTAACCCTCGTATTGAGTGGAAGAAGAAAGGGAAGGACATCACCTTTGTTTATTTCGATGGCAAATTCAGCGGATCCTTTGCTGGTCGGGCCAACATCGAGGGTGCGACAGTGACGCTGCACGCCGTTACCCAGAAGGACTCTGGGCTGTACCGCTGTGAGGTCAGTGCTCCAGCAGACCACACCAACCTGGGAGAGATTAACGTCACCCTCAACGTACTGGTGCCCCCCCACACCCCGTCCTGTGAGGTGCCCAGCTCAGTTTTGTCTGGGGCAGGGGTAGAGCTCCACTGTAAGGATAAACTCAGTGTACCCCCTCCTACCTACATCTGGTACAAAGACAACAAGGCGCtgagcaccacacacacaactgacACCTCCtttagcatggacactgacaagGGAACACTGAAGTTCAAGAGTGTGTCCAAGGCTGACTCAGGCCAGTATCGTTGCGAGGCATCCAACAGTGTGGGGGCGCCAAAGAGCTGTGTGGCCCATCACATGAAGGTCATAGAATATCAGTTGAGTATGACGACACTGATAGCCGGAGCTGTAGGTCTCTTCCTGCTCGTTGTCATGTGCTGCCTGGGTGTGTGCCTctgtcatcgacggggctgctGCAAAAAACAGGAGCAGAAAGGAAGAAGCACCAACTCCTAcaatccacctcctcctcccaccagAAACCCCAAGAACTACAAGCACACCCAGTCCTTCATGATTTGAGGGTTTCCTTTGTGAAACTCAAATCACACAAAgtccccctccaacacacacacacacacacacacacacacacacacacacacacagtggatggATGAGATTGTTCAACATACATATTTTAGCTTGTTTACACCGCCTAGTGGCCAAAGGATGATGCACAATGATATATTTGTCACACAAAAACTGTCACTTGCTGTATGTACTCTTCTCGTTTTGTGCTTTATAGAACATTCTGCTGTTTATGGCTGCATTGAGAAGCAACGATgtgtattattattgttgttttaCAGAGATGCTTTTATAATTATGTTTTTAAAGTATTTGTTTGCGGCTTTGGATGTAGCCTACAAGGTCTTTGTGTGATGAAGGATATGTGATGTTTGAACAGGTGTCTGTATGCACTGACCATTTTTAGATAGCTAGTTTTTAATTAAAGTTATTTTACCACA
>TU2031467
AATGATATTGCTCAATATCAAAACACTCATACCAGTCTAAGCACAGGATCAGTCAAATAGTTTGATTTATGTTAGACAATAAGAGGGTTGTTTGATTGGTGATTATgtacaggagaacagaacagcctGTTTCAATGGCTTCCCTCTTTTATGAGCAGATTCCTCCAAAAATGGATCAGAGGATTCTGATTTCCTGTCACTCCGCTGGATAATAGCTGATCTGGAGAGTCTTGGAATACCATgtcctgcctccctctctctgacagtgAGCACCAGTAAGGCCAAAGTGGTGGTCCATGAGAACACAGACGCTGTGCTGTCCTGTCAGTTCAAGACAGAGAAGGAGACTAACCCTCGTATTGAGTGGAAGAAGAAAGGGAAGGACATCACCTTTGTTTATTTCGATGGCAAATTCAGCGGATCCTTTGCTGGTCGGGCCAACATCGAGGGTGCGACAGTGACGCTGCACGCCGTTACCCAGAAGGACTCTGGGCTGTACCGCTGTGAGTGCCCCCCCACACCCCGTCCTGTGAGGTGCCCAGCTCAGTTTTGTCTGGGGCAGGGGTAGAGCTCCACTGTAAGGATAAACTCAGTGTACCCCCTCCTACCTACATCTGGTACAAAGACAACAAGGCGCtgagcaccacacacacaactgacACCTCCtttagcatggacactgacaagGGAACACTGAAGTTCAAGAGTGTGTCCAAGGCTGACTCAGGCCAGTATCGTTGCGAGGCATCCAACAGTGTGGGGGCGCCAAAGAGCTGTGTGGCCCATCACATGAAGGTCATAGAATATCAGTTGAGTATGACGACACTGATAGCCGGAGCTGTAGGTCTCTTCCTGCTCGTTGTCATGTGCTGCCTGGGTGTGTGCCTctgtcatcgacggggctgctGCAAAAAACCACCAACTCCTAcaatccacctcctcctcccaccagAAACCCCAAGAACTACAAGCACACCCAGTCCTTCATGATTTGAGGGTTTCCTTTGTGAAACTCAAATCACACAAAgtccccctccaacacacacacacacacacacacacacacacacacacacacacagtggatggATGAGATTGTTCAACATACATATTTTAGCTTGTTTACACCGCCTAGTGGCCAAAGGATGATGCACAATGATATATTTGTCACACAAAAACTGTCACTTGCTGTATGTACTCTTCTCGTTTTGTGCTTTATAGAACATTCTGCTGTTTATGGCTGCATTGAGAAGCAACGATgtgtattattattgttgttttaCAGAGATGCTTTTATAATTATGTTTTTAAAGTATTTGTTTGCGGCTTTGGATGTAGCCTACAAGGTCTTTGTGTGATGAAGGATATGTGATGTTTGAACAGGTGTCTGTATGCACTGACCATTTTTAGATAGCTAGTTTTTAATTAAAGTTATTTTAC
>TU2031468
CTTAGAACTTGTTACTTCAACAAACAACAAAGTACACCTTTGTCACAAATTTATAGAGAAAAGATGTTTGCTACAAATTGGTAGAAAATTACAAATTGATCATCACTATTTTGGCTACTGTAGGCTAACATACATGATAGTAGCAATGAcacattaaagctgcaatatgtcactttttgggcgacccaaccaaattcacatagaaatgtgtgttatagttCTGGCATTCATATTGAAagaaagtctaagaagcagtagttCTGTACTGTGTGCTATTTCTATACCTTCCATTCTTACGTTTTGTTTTGCATCTTTTAAtgtcggttttgtacaccagcttcaaacagctgaaaatactatatttttggttgtggaaaatatatttcacagcagtttagtaGATCGTACAGTGATTCTCTACACTttgcttgcttgttttgtcacataaactgaaattaggctaactattgaaatttttgcaaccaggaaatggtggatttctgcatagtgcatctttaagtcCCACAACTTTTAGAGAACGTTGTGTGTTTGCTGGGTGGTGTATTTGACGGTATATACATTGGCCCATTATTCGTTAATAACGTTGTTGTACACAACCGTTTACTGCCTACACACACTGAAGAGGTACAATCCTCTTCGAGGACAAAACGTTTGTCTACTATAGCCAAAATCACAGACGCGTGTGTCGTGGTGAGCGCGCGCCTGAGTATCTCCGCTCGATGAAATGGTATCCATCGGGAGCGCGCACATAGAAAACTTCAAGAACTTCTGAACGTCTAGAAATGTTTCAGTCTTGTCTGGAGCGAACGTTCTCAGACACTCAAATATCTTTCTAGGTTATTTAAATTCACTGGACACTGTTTACTCGTTTGGAAGAACTATGGACAGCATGGGGATTTTGTCTCTTATCTTCCTCGTCTTGTTGCAGAgtcctgcctccctctctctgacagtgAGCACCAGTAAGGCCAAAGTGGTGGTCCATGAGAACACAGACGCTGTGCTGTCCTGTCAGTTCAAGACAGAGAAGGAGACTAACCCTCGTATTGAGTGGAAGAAGAAAGGGAAGGACATCACCTTTGTTTATTTCGATGGCAAATTCAGCGGATCCTTTGCTGGTCGGGCCAACATCGAGGGTGCGACAGTGACGCTGCACGCCGTTACCCAGAAGGACTCTGGGCTGTACCGCTGTGAGTGCCCCCCCACACCCCGTCCTGTGAGGTGCCCAGCTCAGTTTTGTCTGGGGCAGGGGTAGAGCTCCACTGTAAGGATAAACTCAGTGTACCCCCTCCTACCTACATCTGGTACAAAGACAACAAGGCGCtgagcaccacacacacaactgacACCTCCtttagcatggacactgacaagGGAACACTGAAGTTCAAGAGTGTGTCCAAGGCTGACTCAGGCCAGTATCGTTGCGAGGCATCCAACAGTGTGGGGGCGCCAAAGAGCTGTGTGGCCCATCACATGAAGGTCATAGAATATCAGTTGAGTATGACGACACTGATAGCCGGAGCTGTAGGTCTCTTCCTGCTCGTTGTCATGTGCTGCCTGGGTGTGTGCCTctgtcatcgacggggctgctGCAAAAAACCACCAACTCCTAcaatccacctcctcctcccaccagAAACCCCAAGAACTACAAGCACACCCAGTCCTTCATGATTTGAGGGTTTCCTTTGTGAAACTCAAATCACACAAAgtccccctccaacacacacacacacacacacacacacacacacacacacacacagtggatggATGAGATTGTTCAACATACATATTTTAGCTTGTTTACACCGCCTAGTGGCCAAAGGATGATGCACAATGATATATTTGTCACACAAAAACTGTCACTTGCTGTATGTACTCTTCTCGTTTTGTGCTTTATAGAACATTCTGCTGTTTATGGCTGCATTGAGAAGCAACGATgtgtattattattgttgttttaCAGAGATGCTTTTATAATTATGTTTTTAAAGTATTTGTTTGCGGCTTTGGATGTAGCCTACAAGGTCTTTGTGTGATGAAGGATATGTGATGTTTGAACAGGTGTCTGTATGCACTGACCATTTTTAGATAGCTAGTTTTTAATTAAAGTTATTTTAC

Function

NR:

description
junctional adhesion molecule B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578804.2 False 1538 mRNA 0.48 10 8737175 8742339
TU2031467 False 1440 TUCP 0.46 9 8737179 8758540
TU2031468 True 2148 TUCP 0.43 9 8737179 8743033

Neighbor

gene id symbol gene type direction distance location
LOC110501323 LOC106581977 coding downstream 52383 8624815 ~ 8684792 (-)
LOC110502043 LOC106581982 coding downstream 244282 8443607 ~ 8492893 (-)
LOC110501321 fhl2 coding downstream 426706 8294881 ~ 8310469 (-)
mfsd9 mfsd9 coding downstream 563297 8162076 ~ 8173878 (-)
inpp4aa LOC106586779 coding downstream 577660 8100745 ~ 8159515 (-)
LOC110502107 grk1 coding upstream 21685 8763292 ~ 8768047 (-)
LOC110501327 LOC106581971 coding upstream 27829 8770168 ~ 8783060 (-)
LOC110501332 LOC106581974 coding upstream 56406 8798745 ~ 8807833 (-)
LOC110501335 pou2f1 coding upstream 85396 8827735 ~ 8851748 (-)
LOC110501339 cep97 coding upstream 198804 8936033 ~ 8953086 (-)
G1773906 NA non-coding downstream 33670 8703283 ~ 8703505 (-)
G1773886 NA non-coding downstream 57490 8679375 ~ 8679685 (-)
G1773825 NA non-coding downstream 113691 8619447 ~ 8623484 (-)
G1773857 NA non-coding downstream 120367 8616602 ~ 8616808 (-)
G1773855 LOC106581978 non-coding downstream 122159 8614671 ~ 8615016 (-)
G1773966 NA non-coding upstream 63000 8805339 ~ 8805639 (-)
G1773936 NA non-coding upstream 78515 8820854 ~ 8826155 (-)
G1773938 NA non-coding upstream 83962 8826301 ~ 8827680 (-)
G1773977 NA non-coding upstream 184594 8926933 ~ 8929426 (-)
G1774034 NA non-coding upstream 187315 8929654 ~ 8929886 (-)
G1771426 LOC106582012 other downstream 1272483 7462213 ~ 7464692 (-)
G1771092 NA other downstream 1480458 7251784 ~ 7256717 (-)
G1769618 NA other downstream 2776360 5960150 ~ 5960815 (-)
G1769281 NA other downstream 2911868 5800761 ~ 5825307 (-)
gpr161a gpr161 other upstream 316637 9044945 ~ 9063520 (-)
G1774133 NA other upstream 359413 9101752 ~ 9123249 (-)
rpl8 LOC106586796 other upstream 546940 9289279 ~ 9291975 (-)
fundc1 fundc1 other upstream 992903 9635535 ~ 9737896 (-)

Expression


Co-expression Network