LOC110502107 (grk1)


Basic Information

Item Value
gene id LOC110502107
gene name grk1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8763292 ~ 8768047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502107
ATGGATTTGGGCAGCCTGACCACGGTGGTTGCCAACTCAACCTACATCAATGCCCGTGGCAGCTTCGATGGCTCAAACCTAGCGGCTTTGTCTGACAAGTACCCCACCTGCCTCAAGCTGCCCCACATCAGTGTGTGAGGGCATCCAGGAAACCCTGGACCTGGCCTTCTAGTCAGTCTGCGTGGAGCAGCCCATTGGCAAACGCCTCTTCCGCGTGTTCCTTGAGGCTGCTCCCGAATTCATGGTCCTTGCCGCCTGTGGCTGGTACGACTTAGCAGAAGGCTCAGACCGGGCCCAGAAGGCGTTCAGTATCGTCCAGCGCTACCTGCAGGCTCTACTGTCCCTTTCTGACACCGGAGACGGTGAACCCCCTGCAGGGGCCTGGGGACGGCCTCTTTGCCCAAACACTGACCTCAGTACTGGGCTACCTCTAGGATGCTCCCTCCACCTTTTTCCTGGAAAGCATGTTCCTGAAGAGGTTCCTtcagtggagggaggggaggttcAGAGAGGTGTCTGCCTGTCAGATGAAGGCCACAGGGAATATGTATGCCTGCATGAAGCTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGGGCGATGGTGGAGAAGAGGATCCTTGCCAGGGTTCACAGTCACTTCAACGTGTTGCTGGCCTAGAATACTCTGTCTGGTTATGACCATCATGAATGGAGGTGACCTGAAATACCACATCTACCTGATAGATGAGAACAACCCAGGGTTTGAGGAGCCCAGAACCTGTTTCTATTCTGCTCCGATCATCCAGGGCATGGAGCACCTCCACCAGAAGAGCATCCTCTACAGAGACCTCAAACCTGAGAACGTCCTCCTAGATAATGAGGGTAATGTGCGTATCTCTGACCTGGGTCTGGTGGTTGAACTAAAAGTGGACCAGACAAATAGTGAAGGCTATGCTGGAACTCCGGGTTTAATTGCCCCGGAGCTGCTGAAGGGGGAGAAGTATGACACCTCAGTAGACTATTTCGCTGTTTGAGTTCATGGCCGCCAAGAACCCGTTTAGGGAACAAGGGTAGAAGGTAAGGAAGGAAGAGCTGAAGGAGCGTATCATGACTGGGACGGTGGTCTTCCCAGAGACATTCAGTGAGAACAGCAAGTCCATCTGCTCCGGGCTGCTGGAGAAACAGGTTGACCAGAGACTATGCTTCAAGATCGGCGCCTGTGACGAGATCAGGGCACACCCTATTGAAAACCTGTGTGGTGAGCTGAAGAGGAGAGTCCACAAGCGAGGACCAAGGACTCTGAAGGATCTGAAGagtttctgtatggaggaatggtcttaATTCTGTCTTCTCAAACATTATAGGAGACTCAGAGCTGTTATCGTGCCAAAGGGAGGGTGCACAAAGTACTAAGtgcaggggtgccaataattgtgaCAATTTTTTTTCATGAAATAATTATTTCATGATTTTATTTTCTTTGAAAATGTTTAACTCAAAGGATAGATTCATATGATATTTTAAGTGTAA
>TU2031541
GGGACATGAGGAGGATCTTCTTGTGTCCTCTGTCCTGCTGAAGGCACTGATCTTTCTCCTTCCTGTCGCTCCCTCTGTTCATCTTACCCTTTTCTAATCCTCCCTTTCTCTAACACCTTTTATTACTCTCACATTTGAACTTCTTTATCTCACTCTTCTCACCCTATCTCTCCTTCACCATGCTCTCTGAGTGCTGCAGgcagcccctctccctccattgcCATGGATTTGGGCAGCCTGACCACGGTGGTTGCCAACTCAACCTACATCAATGCCCGTGGCAGCTTCGATGGCTCAAACCTAGCGGCTTTGTCTGACAAGTACCCCACCTGCCTCAAGCTGCCCCACATCAGTGTGTGAGGGCATCCAGGAAACCCTGGACCTGGCCTTCTAGTCAGTCTGCGTGGAGCAGCCCATTGGCAAACGCCTCTTCCGCGTGTTCCTTGAGGCTGCTCCCGAATTCATGGTCCTTGCCGCCTGTGGCTGGTACGACTTAGCAGAAGGCTCAGACCGGGCCCAGAAGGCGTTCAGTATCGTCCAGCGCTACCTGCAGGCTCTACTGTCCCTTTCTGACACCGGAGACGGTGAACCCCCTGCAGGGGCCTGGGGACGGCCTCTTTGCCCAAACACTGACCTCAGTACTGGGCTACCTCTAGGATGCTCCCTCCACCTTTTTCCTGGAAAGCATGTTCCTGAAGAGGTTCCTtcagtggagggaggggaggttcAGAGAGGTGTCTGCCTGTCAGATGAAGGCCACAGGGAATATGTATGCCTGCATGAAGCTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGGGGCGATGGTGGAGAAGAGGATCCTTGCCAGGGTTCACAGTCACTTCAACGTGTTGCTGGCCTAGAATACTCTGTCTGGTTATGACCATCATGAATGGAGATACCACATCTACCTGATAGATGAGAACAACCCAGGGTTTGAGGAGCCCAGAACCTGTTTCTATTCTGCTCCGATCATCCAGGGCATGGAGCACCTCCACCAGAAGAGCATCCTCTACAGAGACCTCAAACCTGAGAACGTCCTCCTAGATAATGAAGCTACACACTGAGATagttatgtacacacacacacacacacgtttgtgtgACGTGATGCTCTGTGATGCGATGTTGTCCTTGGGTAATGTGCGTATCTCTGACCTGGGTCTGGTGGTTGAACTAAAAGTGGACCAGACAAATAGTGAAGGCTATGCTGGAACTCCAGGTCAGTCTCACCTGCCCGACCTCATTATCTCACAATGGGTCTCACGTTTAGTGTCTCCAAGAAGCGCCACTCTGTCTCTTGTGACTGACCTTTAACCTTTGACCTCTACCCCAAGGGTTTAATTGCCCCGGAGCTGCTGAAGGGGGAGAAGTATGACACCTCAGTAGACTATTTCGCTGTTTGAGTTCATGGCCGCCAAGAACCCGTTTAGGGAACAAGGGTAGAAGTCGTCTTCTGGTCAGGTGGGAAGGAAGAGCTGAAGGAGCGTATCATGACTGGGACGGTGGTCTTCCCAGAGACATTCAGTGAGAACAGCAAGTCCATCTGCTCCGGGCTGCTGGAGAAACAGGTTGACCAGAGACTATGCTTCAAGATCGGCGCCTGTGACGAGATCAGGGCACACCCTATTGAAAACCTGTGTGGTGAGCTGAAGAGGAGAGTCCACAAGCGAGGACCAAGGACTCTGAAGGATCTGAAGagtttctgtatggaggaatggtcttaATTCTGTCTTCTCAAACATTATAGGAGACTCAGAGCTGTTATCGTGCCAAAGGGAGGGTGCACAAAGTACTAAGtgcaggggtgccaataattgtgaCAATTTTTTTTCATGAAATAATTATTTCATGATTTTATTTTCTTTGAAAATGTTTAACTCAAAGGATAGATTCATATGATATTTTAAGTGTAAGATCAAGCTGATAAACAACAATGACATTTTTCACAGCCATTTTTGTTCATATTTACCTAAGATGCCAATATTTAATGagggcactgtatataaaaatgAGTGTTTAGCTTCTTATTAAACTAGTCTGTTTTCATATTTAGTGGAAAAGTGTTTGACCGTAGTCGTATATGGAGGTGATACTGTCTTGTAGATTTTTGACACTAACTTTATACAGTAACTTTCAATATACATGTATCTGTGGTGATGCCAATGCAGACCCTGGAGTATGGAGAAAGGAACACATTTTTCACACTGTATTGCAAAGCAAATTTattaacaaaacatttgtcactatcaaatacagtgccttgcgaaaggcccccttgaactttgcaaccttttgccacatttcaggcttcaaacataaagatataaaaatgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccacctattGCTGCgactacagctgtaagtcgcttggggtatgtctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccac
>TU2031542
GGGACATGAGGAGGATCTTCTTGTGTCCTCTGTCCTGCTGAAGGCACTGATCTTTCTCCTTCCTGTCGCTCCCTCTGTTCATCTTACCCTTTTCTAATCCTCCCTTTCTCTAACACCTTTTATTACTCTCACATTTGAACTTCTTTATCTCACTCTTCTCACCCTATCTCTCCTTCACCATGCTCTCTGAGTGCTGCAGgcagcccctctccctccattgcCATGGATTTGGGCAGCCTGACCACGGTGGTTGCCAACTCAACCTACATCAATGCCCGTGGCAGCTTCGATGGCTCAAACCTAGCGGCTTTGTCTGACAAGTACCCCACCTGCCTCAAGCTGCCCCACATCAGTGTGTGAGGGCATCCAGGAAACCCTGGACCTGGCCTTCTAGTCAGTCTGCGTGGAGCAGCCCATTGGCAAACGCCTCTTCCGCGTGTTCCTTGAGGCTGCTCCCGAATTCATGGTCCTTGCCGCCTGTGGCTGGTACGACTTAGCAGAAGGCTCAGACCGGGCCCAGAAGGCGTTCAGTATCGTCCAGCGCTACCTGCAGGCTCTACTGTCCCTTTCTGACACCGGAGACGGTGAACCCCCTGCAGGGGCCTGGGGACGGCCTCTTTGCCCAAACACTGACCTCAGTACTGGGCTACCTCTAGGATGCTCCCTCCACCTTTTTCCTGGAAAGCATGTTCCTGAAGAGGTTCCTtcagtggagggaggggaggttcAGAGAGGTGTCTGCCTGTCAGATGAAGGCCACAGGGAATATGTATGCCTGCATGAAGCTCAACAAGAAGAGGCTGAAGAAGAGGAAAGGCTATGAGGTGTGAGGGGCGATGGTGGAGAAGAGGATCCTTGCCAGGGTTCACAGTCACTTCAACGTGTTGCTGGCCTAGAATACTCTGTCTGGTTATGACCATCATGAATGGAGATACCACATCTACCTGATAGATGAGAACAACCCAGGGTTTGAGGAGCCCAGAACCTGTTTCTATTCTGCTCCGATCATCCAGGGCATGGAGCACCTCCACCAGAAGAGCATCCTCTACAGAGACCTCAAACCTGAGAACGTCCTCCTAGATAATGAAGCTACACACTGAGATagttatgtacacacacacacacacacgtttgtgtgACGTGATGCTCTGTGATGCGATGTTGTCCTTGGGTAATGTGCGTATCTCTGACCTGGGTCTGGTGGTTGAACTAAAAGTGGACCAGACAAATAGTGAAGGCTATGCTGGAACTCCAGGTCAGTCTCACCTGCCCGACCTCATTATCTCACAATGGGTCTCACGTTTAGTGTCTCCAAGAAGCGCCACTCTGTCTCTTGTGACTGACCTTTAACCTTTGACCTCTACCCCAAGGGTTTAATTGCCCCGGAGCTGCTGAAGGGGGAGAAGTATGACACCTCAGTAGACTATTTCGCTGTTTGAGTTCATGGCCGCCAAGAACCCGTTTAGGGAACAAGGGTAGAAGGTGGGAAGGAAGAGCTGAAGGAGCGTATCATGACTGGGACGGTGGTCTTCCCAGAGACATTCAGTGAGAACAGCAAGTCCATCTGCTCCGGGCTGCTGGAGAAACAGGTTGACCAGAGACTATGCTTCAAGATCGGCGCCTGTGACGAGATCAGGGCACACCCTATTGAAAACCTGTGTGGTGAGCTGAAGAGGAGAGTCCACAAGCGAGGACCAAGGACTCTGAAGGATCTGAAGagtttctgtatggaggaatggtcttaATTCTGTCTTCTCAAACATTATAGGAGACTCAGAGCTGTTATCGTGCCAAAGGGAGGGTGCACAAAGTACTAAGtgcaggggtgccaataattgtgaCAATTTTTTTTCATGAAATAATTATTTCATGATTTTATTTTCTTTGAAAATGTTTAACTCAAAGGATAGATTCATATGATATTTTAAGTGTAAGATCAAGCTGATAAACAACAATGACATTTTTCACAGCCATTTTTGTTCATATTTACCTAAGATGCCAATATTTAATGagggcactgtatataaaaatgAGTGTTTAGCTTCTTATTAAACTAGTCTGTTTTCATATTTAGTGGAAAAGTGTTTGACCGTAGTCGTATATGGAGGTGATACTGTCTTGTAGATTTTTGACACTAACTTTATACAGTAACTTTCAATATACATGTATCTGTGGTGATGCCAATGCAGACCCTGGAGTATGGAGAAAGGAACACATTTTTCACACTGTATTGCAAAGCAAATTTattaacaaaacatttgtcactatcaaatacagtgccttgcgaaaggcccccttgaactttgcaaccttttgccacatttcaggcttcaaacataaagatataaaaatgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccacctattGCTGCgactacagctgtaagtcgcttggggtatgtctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccac

Function

symbol description
grk1 Enables rhodopsin kinase activity. Involved in protein autophosphorylation and regulation of rhodopsin mediated signaling pathway. Predicted to be located in photoreceptor outer segment. Predicted to be active in cytoplasm. Implicated in Oguchi disease-2 and night blindness.

NR:

description
PREDICTED: rhodopsin kinase-like isoform X1

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502107 False 1519 mRNA 0.51 6 8764024 8767825
TU2031541 False 2675 TUCP 0.47 4 8763292 8768047
TU2031542 True 2666 TUCP 0.47 4 8763292 8768047

Neighbor

gene id symbol gene type direction distance location
LOC110501325 LOC106581976 coding downstream 21685 8737175 ~ 8758540 (-)
LOC110501323 LOC106581977 coding downstream 79232 8624815 ~ 8684792 (-)
LOC110502043 LOC106581982 coding downstream 271131 8443607 ~ 8492893 (-)
LOC110501321 fhl2 coding downstream 453555 8294881 ~ 8310469 (-)
mfsd9 mfsd9 coding downstream 590146 8162076 ~ 8173878 (-)
LOC110501327 LOC106581971 coding upstream 2343 8770168 ~ 8783060 (-)
LOC110501332 LOC106581974 coding upstream 30920 8798745 ~ 8807833 (-)
LOC110501335 pou2f1 coding upstream 59910 8827735 ~ 8851748 (-)
LOC110501339 cep97 coding upstream 173318 8936033 ~ 8953086 (-)
gpr161a gpr161 coding upstream 277120 9044945 ~ 9063520 (-)
G1773906 NA non-coding downstream 60519 8703283 ~ 8703505 (-)
G1773886 NA non-coding downstream 84339 8679375 ~ 8679685 (-)
G1773825 NA non-coding downstream 140540 8619447 ~ 8623484 (-)
G1773857 NA non-coding downstream 147216 8616602 ~ 8616808 (-)
G1773855 LOC106581978 non-coding downstream 149008 8614671 ~ 8615016 (-)
G1773966 NA non-coding upstream 37514 8805339 ~ 8805639 (-)
G1773936 NA non-coding upstream 53029 8820854 ~ 8826155 (-)
G1773938 NA non-coding upstream 58476 8826301 ~ 8827680 (-)
G1773977 NA non-coding upstream 159108 8926933 ~ 8929426 (-)
G1774034 NA non-coding upstream 161829 8929654 ~ 8929886 (-)
G1771426 LOC106582012 other downstream 1299332 7462213 ~ 7464692 (-)
G1771092 NA other downstream 1507307 7251784 ~ 7256717 (-)
G1769618 NA other downstream 2803209 5960150 ~ 5960815 (-)
G1774133 NA other upstream 333927 9101752 ~ 9123249 (-)
rpl8 LOC106586796 other upstream 521454 9289279 ~ 9291975 (-)
fundc1 fundc1 other upstream 967417 9635535 ~ 9737896 (-)
G1777196 LOC100136012 other upstream 3073248 11841073 ~ 11843059 (-)

Expression


Co-expression Network