LOC110501332 (LOC106581974)


Basic Information

Item Value
gene id LOC110501332
gene name LOC106581974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8798745 ~ 8807833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958625.1
ACTCTCCGTTACATGACCGTGGTCATTTTTTCTTGGTGCAGAGCATAAATCATCCGTGGTATGTGACGGTCCAAACACAACGAGCATCAATTTAATCTGCACGAGGTAAAGCAAAAAGAAAGGAAATATTTCCGAAGATTTGTTTCCAGAGGACTCTTGCTCGCGGTAGCAAAGAGAGCGCACGAACAGTGGGTTTGCGTAGTTTCTAGCAAAGCTAGCTCACAGACCGTCCTGCATTCCTGTCTCTGGGTTGTGTGCATGCTGTTGTGATTCGCATTGGCAAACAACCGAATAAAAAATATGAAACAACATAACCGCAAACAACCCTTGTTCCTGGCGTTCATCACGTTTTTAGcggTCACGTTGCATCAGAGCTTTGCTGCCACTGACGTCCCGCCCACTGCTGCTGCCCCTCAAACCACGGCTCCGCCACCTGCGCCCCCAGCCCGGCCTGAGAGGGGCAACTACACTGTAACCAACGGCAATGGGACCGTCTGTCTGATGGCCCGCATGGGACTGCAGCTCAACATCCGCTTCAGCTCTGCCTCTCTCAATAATACTGTGCAAGACGTGTTGAACCTCCAGCCCAACGTGACTAAGAGCTCAGGGTCATGTGACTCAGACAGTGCCACCCTGCTGCTGATGGCTGAGGAGAAAACCAACCTCACCTTCGTTTTCTCCCTGAATGCCACGTCCAGTAAGTACCACCTGAGTGGAGTTACTCTGTCTGCAGCCTGGCCGGACATGAGTGAGCCCTTCTCAGCCAGTAACAGTAGTCTGGACTACCTGCATGGTACCCTGGGGCGTAGTTACATGTGTCGTGAGGAGCAGACTCTGGCTGTGGCTGTGAACTTCTCTCTCAACACCTTCCAGCTGCAGGTGCAGCCCTTCGGCCTAACCGGGGACCAGTTTGGAGCAGcGGAGGAGTGTCAGCTGGATGAGGATGACATGTTGATCCCCATCATCGTGGGCACTGCGCTGGCCAGTCTGGTCCTCATCGTTCTTGTGGCCTACCTTATTGGCAGGAAGAGGAGCCACGCCGGGTACCAGACTATCTGAGATTACTTCCTGTCAAttgacccctcccccccccccctccctcccccagattGACTGAACCTCACTCCGACCCTCAACTGAACTTCCCCAACTCCATTCAGTTGGTCTTACCGTAGAATCCTTGCTGCCACCTCCTCCCCTTTGTACTCACTTACTCCACGTTGGGTCTCCAtggggttgatttgcactttcagAACTGAACTGCTCCTTTGTATGCTGACATTGTAATGACATAACGAAACAGATCGACACAGTCCCTCAACACTGGAGGGGATGGTGTGGTGGCGTGCTCATAACCGTATGCTGAATAATAATCCACACTCTGCGTAGCCTAAGGTATTTTTATCATGCTTACGTTTTACTGGTGTCTGACATGGGAATTCTGAGGGattgtttgtttacaagcattgCTGCTGCTGTTTTCAATGGCTTTTTGTGTTTTTGATGGTGGCCATTGTCAGTCACATAATAGGTCAGTTACTCTTGTGTGAAGGGAATATTATGACTAGCTGGCTGCTCCCCTCTCTCAACCAGTGGAAGTTAACTTGTTGCATAATGTTTGCAACATCATTGAATATGGAGTTGATGGAAGTTGCCTCTAACCGCTGGTCCAGGGTCAGATATTTTTGTATCCTGTTTGTTAGGAGCTGAATAATCTGACcttagatctgtggttaggggcTTCGCTTGGGACCGGAGGTCAGCTGCAGATTGGGAATGGTAGTGTTTGTCAATCCATAGGGGCACATTTTGTTTACTTTGGGTTCCCCTCGGAATGGATTGAGGAACAAGGATGAAGGTAATTTGATGGTAAAGCAGTTGTCTGCAGAGAGAGGGACTCATTAATTTATGGTGATCAAAGTCCACAAACCACCCTATAACCCCTAAATAACTTGGAATCTACACTTTGTCTGATTAATACATTTGCGGGGCTAGAGGTTGTTTCTGGACCAGGCCTCAGATTTTTTTTCAATGATTCTAAGAGGGAATGTGAAACTGAATTGACAGAACGAGCATCACACGCTACACTAGAATGAAGGGGCGTGTGCTCCACTTAGACATTGGTATTACAGCGCACTGTACCATGACTACCATGTTACTACCTAATTGATTATGTGCCAATTTCCCCTTAGCAGTGACTTAAACCTGGTTTTATGAATACTGGTACTACCAATTATAGTAACATTAAGACAGATTTTTGTTGCTACTTTGTTGGTACTTCCAGTGATTATATTACGGGGTGCTCACAAAGGCCGAATACTAGTTTAAAATGTAACTGGACATTTAAGTGAATAGTTCTAGGTTGTTTTCTCAAGTTAGGATTCAGGCTATTATAGTTAGAACAATTTAAGGGAGTTGGAGTTACTGTCCATAGTACAACACCATTTTAGAGAGGAATACTACATCTTAAGTGCCCGTGCCAAATGGAATCTGTGCCTCTCCACTTACAAGAAGGATGGGATCTATGCCAATGTTATAGTttcaaattacaccctattccccatgtagtgcacatCTTCATTGTCATTGGGGACATACCCTTTCTATCTACACAGCATGTGACCTTGTCAGGGACATTCCCTTTGTTGATTTGCCTGGCCTATTGAATGATCATAGATGATGCATTGTTTGTAGTGAAACGGGGAAGTGAAAAGGATGTGAACTTTCACTCCACCCCTCATTTAGAATTGTTAATATCCATATGTAGTGATTCAGGGCTGGATTCAATCAGTATCAGAGCGAGATGTTCCCGCATTAACGTAAGCGCTACATGTCAACTCAATCAGCAATTACCTGAATTTTAACGCGGATGTTCCGCGATACAGATTGGATCCGGCCCTTTAAGGTTTAAAAGAGAATGTTTTAATTGTTTTCTAAAAGCGGAGCAAATAAAATAAGAGGTGAGGAATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958625.1 True 2971 mRNA 0.46 6 8798745 8807833

Neighbor

gene id symbol gene type direction distance location
LOC110501327 LOC106581971 coding downstream 15685 8770168 ~ 8783060 (-)
LOC110502107 grk1 coding downstream 30920 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 coding downstream 56406 8737175 ~ 8758540 (-)
LOC110501323 LOC106581977 coding downstream 113953 8624815 ~ 8684792 (-)
LOC110502043 LOC106581982 coding downstream 305852 8443607 ~ 8492893 (-)
LOC110501335 pou2f1 coding upstream 19902 8827735 ~ 8851748 (-)
LOC110501339 cep97 coding upstream 133310 8936033 ~ 8953086 (-)
gpr161a gpr161 coding upstream 237112 9044945 ~ 9063520 (-)
si:ch211-218d20.15 LOC106581952 coding upstream 349086 9156919 ~ 9165305 (-)
med14 LOC106581951 coding upstream 357571 9165404 ~ 9205109 (-)
G1773906 NA non-coding downstream 95240 8703283 ~ 8703505 (-)
G1773886 NA non-coding downstream 119060 8679375 ~ 8679685 (-)
G1773825 NA non-coding downstream 175261 8619447 ~ 8623484 (-)
G1773857 NA non-coding downstream 181937 8616602 ~ 8616808 (-)
G1773855 LOC106581978 non-coding downstream 183729 8614671 ~ 8615016 (-)
G1773936 NA non-coding upstream 13021 8820854 ~ 8826155 (-)
G1773938 NA non-coding upstream 18468 8826301 ~ 8827680 (-)
G1773977 NA non-coding upstream 119100 8926933 ~ 8929426 (-)
G1774034 NA non-coding upstream 121821 8929654 ~ 8929886 (-)
G1774038 NA non-coding upstream 124534 8932367 ~ 8937720 (-)
G1771426 LOC106582012 other downstream 1334053 7462213 ~ 7464692 (-)
G1771092 NA other downstream 1542028 7251784 ~ 7256717 (-)
G1774133 NA other upstream 293919 9101752 ~ 9123249 (-)
rpl8 LOC106586796 other upstream 481446 9289279 ~ 9291975 (-)
fundc1 fundc1 other upstream 927409 9635535 ~ 9737896 (-)
G1777196 LOC100136012 other upstream 3033240 11841073 ~ 11843059 (-)

Expression


Co-expression Network