si:ch211-218d20.15 (LOC106581952)


Basic Information

Item Value
gene id si:ch211-218d20.15
gene name LOC106581952
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9156919 ~ 9165305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578855.2
AGTTTTCATTTCTCATGATGTACCTTATTTCACATTGCTGAATGTTTTGATGGATTGGATCTCAACGATTCATTTATCTTGAACCGTTCAAAAATACCTCCGTGATCTTGAACGCACCCCTTGTCAGACAAAAATAATTCCGATCGGCAATGAGTGCAAATGTTTTCCGCAGCGATACACGGCCACTAACACACACCAACGTTCTTTTTTTTCTGGATGATAAAGGTCGATTTGTCAGATAATAGGTTGATAACGCTAATCGAGATATGGCAGCAGTCAGCTTCTCCGAGGCGCTCTGTCAGCCGTGCGTTTATCACGAGAAATTCAAAGCTATCTGTTCTGATCTAAACGTTGCAACCCTCTTGGGGGGGAACCTTATGTGCTGAAACCCCTGTGGTCAGTTGAGCTGAATGTAAAGAGACCCCTGATGCCTGTCCACCTGAGTCCAGAGCAGGTGGGGCTGGAGATGCTGTATCTCTGTGGACAACTGGACCTTCTCATCAGGGCACAGGTACACCAGTTCCAGGAGCAGCTGAGACCCAACTGTAGCCCTGAGGAGTCGGACACTTTCCAGGAGCAAGGAGCAGAGATTATTGATCAGATGCTCCAATGCTTAGAACACCTGCCAAGACCTATGCCGCACCTGGAGGACTATCTTGACATGGTGGGTCTGTCGACCATGTACCCTCGCGTGGAGGTGTTCCTCATCCAGGGCAGTCCAGTAGACATGCTGGAGAAACCCCCAATGGATGAATACTTCTCACACATCGGGAGGCTCAATCAGCTACTAGTACTTAGTCAGCAGCTAGAGGAGGATGTAAAACATCTCGGGAGCCACAAATACATCGCCCACCAGCTGTCAGTTATATATCAAGTGCTCAGCTCATTCCGAGGTATCCAGCCACTGTCGGTCCTGAAGAAAGAGATTGAGGCCAACTTCAGACAGATGAAGACATCTTTGCTGACAGAGGAGGGCTCCAGGCAGGAGCCTCAGCTCCCAGCACACTACATCAGCTGGATATTGGAGCTGACTCTTAGTATAACGTCAACAGTCTCCTCGCTACCAGAGGAACTCACTGAAGACCTGAGTCCAGCCATGACCTTTGTGTCCCAGCTATGACATCACACCTGACATTGGGCCCGTGTTACATATTACCAACCCGTGGAGCTGAGGGTCAACAACATTTGATTTTTTATTAATGTCCGACAGACCAACCCGGTGATTCAAGAATGATGCTTTGACATGTCACTGTCATTTTATTGAATAGGGTCCTGAGCTCTCATTGGTTAAGTGGATGAATGTTAATGAATGTGTTATAAATGTGTTAGGCCAAATGTCTAAAAAGAGGTGCTAAATAATGTTACTGTATGAAATTGCATTTGAACAAATTGTTTACATTGGCCAATAAATTAAATTGAGAGATAAGCCTATAGACTGAAAATCTTCTGAATTTCAATAACAGAGATTGACCACGAGTCATAGATTTGAAAGAGAACAGGCTAATCGGGCAAAATGGTCACGGAAGCCACGGATGTTCAAGGCCGACCGTGGTCGAGCATACATTGTTAGCGGAAAACAGGATAGTGAATGGAAAAATGGAAATCCTCATGGTCAATCATCGTCTTAATAAATACACATTTGAAAGAAAA
>XM_021578854.2
CTTTTGCTAGTTTTCATTTCTCATGATGTACCTTATTTCACATTGCTGAATGTTTTGATGGATTGGATCTCAACGATTCATTTATCTTGAACCGTTCAAAAATACCTCCGTGATCTTGAACGCACCCCTTGTCAGACAAAAATAATTCCGATCGGCAATGAGTGCAAATGTTTTCCGCAGCGATACACGGCCACTAACACACACCAACGTTCTTTTTTTTCTGGATGATAAAGGTCGATTTGTCAGATAATAGGTTGATAACGCTAATCGAGATATGGCAGCAGTCAGCTTCTCCGAGGCGCTCTGTCAGCCGTGCGTTTATCACGAGAAATTCAAAGTTGAGCTGAATGTAAAGAGACCCCTGATGCCTGTCCACCTGAGTCCAGAGCAGGTGGGGCTGGAGATGCTGTATCTCTGTGGACAACTGGACCTTCTCATCAGGGCACAGGTACACCAGTTCCAGGAGCAGCTGAGACCCAACTGTAGCCCTGAGGAGTCGGACACTTTCCAGGAGCAAGAGATTATTGATCAGATGCTCCAATGCTTAGAACACCTGCCAAGACCTATGCCGCACCTGGAGGACTATCTTGACATGGTGGGTCTGTCGACCATGTACCCTCGCGTGGAGGTGTTCCTCATCCAGGGCAGTCCAGTAGACATGCTGGAGAAACCCCCAATGGATGAATACTTCTCACACATCGGGAGGCTCAATCAGCTACTAGTACTTAGTCAGCAGCTAGAGGAGGATGTAAAACATCTCGGGAGCCACAAATACATCGCCCACCAGCTGTCAGTTATATATCAAGTGCTCAGCTCATTCCGAGGTATCCAGCCACTGTCGGTCCTGAAGAAAGAGATTGAGGCCAACTTCAGACAGATGAAGACATCTTTGCTGACAGAGGAGGGCTCCAGGCAGGAGCCTCAGCTCCCAGCACACTACATCAGCTGGATATTGGAGCTGACTCTTAGTATAACGTCAACAGTCTCCTCGCTACCAGAGGAACTCACTGAAGACCTGAGTCCAGCCATGACCTTTGTGTCCCAGCTATGACATCACACCTGACATTGGGCCCGTGTTACATATTACCAACCCGTGGAGCTGAGGGTCAACAACATTTGATTTTTTATTAATGTCCGACAGACCAACCCGGTGATTCAAGAATGATGCTTTGACATGTCACTGTCATTTTATTGAATAGGGTCCTGAGCTCTCATTGGTTAAGTGGATGAATGTTAATGAATGTGTTATAAATGTGTTAGGCCAAATGTCTAAAAAGAGGTGCTAAATAATGTTACTGTATGAAATTGCATTTGAACAAATTGTTTACATTGGCCAATAAATTAAATTGAGAGATAAGCCTATAGACTGAAAATCTTCTGAATTTCAATAACAGAGATTGACCACGAGTCATAGATTTGAAAGAGAACAGGCTAATCGGGCAAAATGGTCACGGAAGCCACGGATGTTCAAGGCCGACCGTGGTCGAGCATACATTGTTAGCGGAAAACAGGATAGTGAATGGAAAAATGGAAATCCTCATGGTCAATCATCGTCTTAATAAATACACATTTGAAAGAAAA
>XM_021578853.2
TCATCCAGAAAGCAGACTGGTCTTCAATAGAGGTGGGTTCAAAACTTCAAAGCTGCTGTTCGATCTGAAATGGTCGATTTGTCAGATAATAGGTTGATAACGCTAATCGAGATATGGCAGCAGTCAGCTTCTCCGAGGCGCTCTGTCAGCCGTGCGTTTATCACGAGAAATTCAAAGTTGAGCTGAATGTAAAGAGACCCCTGATGCCTGTCCACCTGAGTCCAGAGCAGGTGGGGCTGGAGATGCTGTATCTCTGTGGACAACTGGACCTTCTCATCAGGGCACAGGTACACCAGTTCCAGGAGCAGCTGAGACCCAACTGTAGCCCTGAGGAGTCGGACACTTTCCAGGAGCAAGGAGCAGAGATTATTGATCAGATGCTCCAATGCTTAGAACACCTGCCAAGACCTATGCCGCACCTGGAGGACTATCTTGACATGGTGGGTCTGTCGACCATGTACCCTCGCGTGGAGGTGTTCCTCATCCAGGGCAGTCCAGTAGACATGCTGGAGAAACCCCCAATGGATGAATACTTCTCACACATCGGGAGGCTCAATCAGCTACTAGTACTTAGTCAGCAGCTAGAGGAGGATGTAAAACATCTCGGGAGCCACAAATACATCGCCCACCAGCTGTCAGTTATATATCAAGTGCTCAGCTCATTCCGAGGTATCCAGCCACTGTCGGTCCTGAAGAAAGAGATTGAGGCCAACTTCAGACAGATGAAGACATCTTTGCTGACAGAGGAGGGCTCCAGGCAGGAGCCTCAGCTCCCAGCACACTACATCAGCTGGATATTGGAGCTGACTCTTAGTATAACGTCAACAGTCTCCTCGCTACCAGAGGAACTCACTGAAGACCTGAGTCCAGCCATGACCTTTGTGTCCCAGCTATGACATCACACCTGACATTGGGCCCGTGTTACATATTACCAACCCGTGGAGCTGAGGGTCAACAACATTTGATTTTTTATTAATGTCCGACAGACCAACCCGGTGATTCAAGAATGATGCTTTGACATGTCACTGTCATTTTATTGAATAGGGTCCTGAGCTCTCATTGGTTAAGTGGATGAATGTTAATGAATGTGTTATAAATGTGTTAGGCCAAATGTCTAAAAAGAGGTGCTAAATAATGTTACTGTATGAAATTGCATTTGAACAAATTGTTTACATTGGCCAATAAATTAAATTGAGAGATAAGCCTATAGACTGAAAATCTTCTGAATTTCAATAACAGAGATTGACCACGAGTCATAGATTTGAAAGAGAACAGGCTAATCGGGCAAAATGGTCACGGAAGCCACGGATGTTCAAGGCCGACCGTGGTCGAGCATACATTGTTAGCGGAAAACAGGATAGTGAATGGAAAAATGGAAATCCTCATGGTCAATCATCGTCTTAATAAATACACATTTGAAAGAAAA
>XM_036958658.1
TCATCCAGAAAGCAGACTGGTCTTCAATAGAGGTGGGTTCAAAACTTCAAAGCTGCTGTTCGATCTGAAATGGTCGATTTGTCAGATAATAGGTTGATAACGCTAATCGAGATATGGCAGCAGTCAGCTTCTCCGAGGCGCTCTGTCAGCCGTGCGTTTATCACGAGAAATTCAAAGAGCAGGTGGGGCTGGAGATGCTGTATCTCTGTGGACAACTGGACCTTCTCATCAGGGCACAGGTACACCAGTTCCAGGAGCAGCTGAGACCCAACTGTAGCCCTGAGGAGTCGGACACTTTCCAGGAGCAAGGAGCAGAGATTATTGATCAGATGCTCCAATGCTTAGAACACCTGCCAAGACCTATGCCGCACCTGGAGGACTATCTTGACATGGTGGGTCTGTCGACCATGTACCCTCGCGTGGAGGTGTTCCTCATCCAGGGCAGTCCAGTAGACATGCTGGAGAAACCCCCAATGGATGAATACTTCTCACACATCGGGAGGCTCAATCAGCTACTAGTACTTAGTCAGCAGCTAGAGGAGGATGTAAAACATCTCGGGAGCCACAAATACATCGCCCACCAGCTGTCAGTTATATATCAAGTGCTCAGCTCATTCCGAGGTATCCAGCCACTGTCGGTCCTGAAGAAAGAGATTGAGGCCAACTTCAGACAGATGAAGACATCTTTGCTGACAGAGGAGGGCTCCAGGCAGGAGCCTCAGCTCCCAGCACACTACATCAGCTGGATATTGGAGCTGACTCTTAGTATAACGTCAACAGTCTCCTCGCTACCAGAGGAACTCACTGAAGACCTGAGTCCAGCCATGACCTTTGTGTCCCAGCTATGACATCACACCTGACATTGGGCCCGTGTTACATATTACCAACCCGTGGAGCTGAGGGTCAACAACATTTGATTTTTTATTAATGTCCGACAGACCAACCCGGTGATTCAAGAATGATGCTTTGACATGTCACTGTCATTTTATTGAATAGGGTCCTGAGCTCTCATTGGTTAAGTGGATGAATGTTAATGAATGTGTTATAAATGTGTTAGGCCAAATGTCTAAAAAGAGGTGCTAAATAATGTTACTGTATGAAATTGCATTTGAACAAATTGTTTACATTGGCCAATAAATTAAATTGAGAGATAAGCCTATAGACTGAAAATCTTCTGAATTTCAATAACAGAGATTGACCACGAGTCATAGATTTGAAAGAGAACAGGCTAATCGGGCAAAATGGTCACGGAAGCCACGGATGTTCAAGGCCGACCGTGGTCGAGCATACATTGTTAGCGGAAAACAGGATAGTGAATGGAAAAATGGAAATCCTCATGGTCAATCATCGTCTTAATAAATACACATTTGAAAGAAAA
>TU2031749
aatattcaatttctgttagtctgtggaacttgttcagtttatgtctcagttgttgaatcttatgttcataaaaatatttgcacatgttaagtttgctgaaaataaattcAGTTGACAATGAcaggatatttatttttttgctgagtttatatgtaattgtttttgttcagtttagtaTGCAATGATTATAAGCAGTTTATAAACAGACACTTCACCTTTATAACCGCTTATACCTAAGATTGTGTCTCTGTTGCAGAATACTTCTCACACATCGGGAGGCTCAATCAGCTACTAGTACTTAGTCAGCAGCTAGAGGAGGATGTAAAACATCTCGGGAGCCACAAATACATCGCCCACCAGCTGTCAGTTATATATCAAGTGCTCAGCTCATTCCGAGGTATCCAGCCACTGTCGGTCCTGAAGAAAGAGATTGAGGCCAACTTCAGACAGATGAAGACATCTTTGCTGACAGAGGAGGGCTCCAGGCAGGAGCCTCAGCTCCCAGCACACTACATCAGCTGGATATTGGAGCTGACTCTTAGTATAACGTCAACAGTCTCCTCGCTACCAGAGGAACTCACTGAAGACCTGAGTCCAGCCATGACCTTTGTGTCCCAGCTATGACATCACACCTGACATTGGGCCCGTGTTACATATTACCAACCCGTGGAGCTGAGGGTCAACAACATTTGATTTTTTATTAATGTCCGACAGACCAACCCGGTGATTCAAGAATGATGCTTTGACATGTCACTGTCATTTTATTGAATAGGGTCCTGAGCTCTCATTGGTTAAGTGGATGAATGTTAATGAATGTGTTATAAATGTGTTAGGCCAAATGTCTAAAAAGAGGTGCTAAATAATGTTACTGTATGAAATTGCATTTGAACAAATTGTTTACATTGGCCAATAAATTAAATTGAGAGATAAGCCTATAGACTGAAAATCTTCTGAATTTCAATAACAGAGATTGACCACGAGTCATAGATTTGAAAGAGAACAGGCTAATCGGGCAAAATGGTCACGGAAGCCACGGATGTTCAAGGCCGACCGTGGTCGAGCATACATTGTTAGCGGAAAACAGGATAGTGAATGGAAAAATGGAAATCCTCATGGTCAATCATCGTCTTAATAAAT

Function

NR:

description
uncharacterized protein LOC110501347 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578855.2 False 1650 mRNA 0.45 8 9156919 9165142
XM_021578854.2 False 1581 mRNA 0.45 8 9156919 9165150
XM_021578853.2 False 1426 mRNA 0.46 9 9156919 9165305
XM_036958658.1 False 1378 mRNA 0.46 9 9156919 9165305
TU2031749 True 1137 lncRNA 0.40 3 9156936 9158442

Neighbor

gene id symbol gene type direction distance location
gpr161a gpr161 coding downstream 93399 9044945 ~ 9063520 (-)
LOC110501339 cep97 coding downstream 203833 8936033 ~ 8953086 (-)
LOC110501335 pou2f1 coding downstream 305171 8827735 ~ 8851748 (-)
LOC110501332 LOC106581974 coding downstream 349086 8798745 ~ 8807833 (-)
LOC110501327 LOC106581971 coding downstream 373859 8770168 ~ 8783060 (-)
med14 LOC106581951 coding upstream 99 9165404 ~ 9205109 (-)
rpl8 LOC106586796 coding upstream 124046 9289279 ~ 9291975 (-)
LOC110501351 cask coding upstream 163683 9328988 ~ 9535916 (-)
LOC110501355 LOC106581891 coding upstream 412602 9577907 ~ 9579194 (-)
mao LOC106581942 coding upstream 434874 9600179 ~ 9663466 (-)
G1774150 NA non-coding downstream 1081 9155383 ~ 9155838 (-)
G1774139 prmt2 non-coding downstream 21650 9133349 ~ 9135269 (-)
G1774133 NA non-coding downstream 33670 9101752 ~ 9123249 (-)
G1774130 NA non-coding downstream 34531 9098972 ~ 9122388 (-)
G1774129 NA non-coding downstream 36661 9097120 ~ 9120258 (-)
G1774352 NA non-coding upstream 388719 9554024 ~ 9554342 (-)
fundc1 fundc1 non-coding upstream 470230 9635535 ~ 9737896 (-)
G1774395 NA non-coding upstream 485788 9651093 ~ 9651451 (-)
G1774410 NA non-coding upstream 501830 9667135 ~ 9667789 (-)
LOC110502107 grk1 other downstream 388872 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 other downstream 398379 8737175 ~ 8758540 (-)
LOC110501323 LOC106581977 other downstream 515781 8624815 ~ 8684792 (-)
G1777196 LOC100136012 other upstream 2675768 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2875803 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 3102912 12268217 ~ 12270114 (-)

Expression


Co-expression Network