rpl8 (LOC106586796)


Basic Information

Item Value
gene id rpl8
gene name LOC106586796
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9289279 ~ 9291975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578857.2
CATCGGGGTTTAGGTAGGGGAATGGCGATTTTATTCTCTTCACATAATCCGAGTTAAATCTGGTTTAAAATCCTATCATCCTCTCGAAAATTCACGATGGGACGTGTTATCAGGGGACAGAGAAAAGGTGCCGGCTCCGTGTTCAAAGCCCACGTGAAGCACAGAAAAGGTGCCGCTAAACTCAGACACATTGACTTCGCAGAACGTCATGGTTACATCAAGGGAATCGTAAAGGACATTATCCATGACCCTGGCCGTGGTGCTCCCCTTGCCAAGGTGGCTTTCCGTGACCCCTACCGGTTCAAGAAGAGGACTGAGCTGTTCATTGCTGCTGAGGGCATCCACACCGGACAGTTCATCTACTGTGGCAAGAAAGCCCAGCTGAACATTGGTAATGTTCTGCCTGTGGGCACCATGCCTGAGGGAACCATCATCTGCTGCCTGGAGGAGAAACCTGGCGACAGGGGCAAGCTGGCCAGAGCGTCTGGGAACTACGCCACAGTCATCTCCCACAACCCAGAGACCAAGAAGTCCAGAGTCAAGCTTCCCTCTGGCTCCAAGAAGGTCATTGCTTCTGCTAACAGAGCTGTCGTTGGTGTGGTTGCCGGAGGTGGACGTATTGACAAGCCCATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGCCAAGAGGAACTCCTGGCCACGTGTCCGTGGTGTGGCCATGAATCCTGTTGAACATCCCTTCGGTGGTGGTAACCACCAGCATATTGGAAAACCCTCAACTATCAGGAGGGATGCACCCGCTGGTCGCAAGGTCGGTCTCATTGCTGCCCGTCGTACAGGCAGACTGCGTGGAACAAAGACGGTCACGGAGAAGGAGAACTAACTCCCTTTACAATAAAATGTTCCAAGGAAGCTGA
>XM_021578858.2
TCCTCTTTCCGTCATCGGGGTTTAGTCACGATGGGACGTGTTATCAGGGGACAGAGAAAAGGTGCCGGCTCCGTGTTCAAAGCCCACGTGAAGCACAGAAAAGGTGCCGCTAAACTCAGACACATTGACTTCGCAGAACGTCATGGTTACATCAAGGGAATCGTAAAGGACATTATCCATGACCCTGGCCGTGGTGCTCCCCTTGCCAAGGTGGCTTTCCGTGACCCCTACCGGTTCAAGAAGAGGACTGAGCTGTTCATTGCTGCTGAGGGCATCCACACCGGACAGTTCATCTACTGTGGCAAGAAAGCCCAGCTGAACATTGGTAATGTTCTGCCTGTGGGCACCATGCCTGAGGGAACCATCATCTGCTGCCTGGAGGAGAAACCTGGCGACAGGGGCAAGCTGGCCAGAGCGTCTGGGAACTACGCCACAGTCATCTCCCACAACCCAGAGACCAAGAAGTCCAGAGTCAAGCTTCCCTCTGGCTCCAAGAAGGTCATTGCTTCTGCTAACAGAGCTGTCGTTGGTGTGGTTGCCGGAGGTGGACGTATTGACAAGCCCATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGCCAAGAGGAACTCCTGGCCACGTGTCCGTGGTGTGGCCATGAATCCTGTTGAACATCCCTTCGGTGGTGGTAACCACCAGCATATTGGAAAACCCTCAACTATCAGGAGGGATGCACCCGCTGGTCGCAAGGTCGGTCTCATTGCTGCCCGTCGTACAGGCAGACTGCGTGGAACAAAGACGGTCACGGAGAAGGAGAACTAACTCCCTTTACAATAAAATGTTCCAAGGAAGCTGA
>TU2031837
GTCGGACTCTTCCTCTTTCCGTCATCGGGGTTTAGTCACGATGGGACGTGTTATCAGGGGACAGAGAAAAGGTGCCGGCTCCGTGTTCAAAGCCCACGTGAAGCACAGAAAAGGTGCCGCTAAACTCAGACACATTGACTTCGCAGAACGTCATGGTTACATCAAGGGAATCGTAAAGGACATTATCCATGACCCTGGCCGTGGTGCTCCCCTTGCCAAGGTGGCTTTCCGTGACCCCTACCGGTTCAAGAAGAGGACTGAGCTGTTCATTGCTGCTGAGGGCATCCACACCGGACAGTTCATCTACTGTGGCAAGAAAGCTGAACATTGGTAATGTTCTGCCTGTGGGCACCATGCCTGAGGGAACCATCATCTGCTGCCTGGAGGAGAAACCTGGCGACAGGGGCAAGCTGGCCAGAGCGTCTGGGAACTACGCCACAGTCATCTCCCACAACCCAGTGTGGTTGCCGGAGGTGGACGTATTGACAAGCCCATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGCCAAGAGGAACTCCTGGCCACGTGTCCGTGGTGTGGCCATGAATCCTGTTGAACATCCCTTCGGTGGTGGTAACCACCAGCATATTGGAAAACCCTCAACTATCAGGAGGGATGCACCCGCTGGTCGCAAGGTCGGTCTCATTGCTGCCCGTCGTACAGGCAGACTGCGTGGAACAAAGACGGTCACGGAGAAGGAGAACTAACTCCCTTTACAATAAAATGTTCCAAGGAAGCTGATCTGACTCCTTTTGTAGCGCCAGTGTTTAAGCATGGAGTTGGATACGAGGACAATTCACTCTGTTTTTGGTA

Function

NR:

description
PREDICTED: 60S ribosomal protein L8-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578857.2 False 904 mRNA 0.53 6 9289351 9291953
XM_021578858.2 False 838 mRNA 0.54 6 9289351 9291965
TU2031837 True 839 TUCP 0.54 6 9289279 9291975

Neighbor

gene id symbol gene type direction distance location
med14 LOC106581951 coding downstream 84242 9165404 ~ 9205109 (-)
si:ch211-218d20.15 LOC106581952 coding downstream 124046 9156919 ~ 9165305 (-)
gpr161a gpr161 coding downstream 225831 9044945 ~ 9063520 (-)
LOC110501339 cep97 coding downstream 336265 8936033 ~ 8953086 (-)
LOC110501335 pou2f1 coding downstream 437603 8827735 ~ 8851748 (-)
LOC110501351 cask coding upstream 37023 9328988 ~ 9535916 (-)
LOC110501355 LOC106581891 coding upstream 285942 9577907 ~ 9579194 (-)
mao LOC106581942 coding upstream 308214 9600179 ~ 9663466 (-)
ndp ndp coding upstream 384718 9676683 ~ 9698024 (-)
efhc2 efhc2 coding upstream 421450 9713415 ~ 9734934 (-)
G1774150 NA non-coding downstream 133513 9155383 ~ 9155838 (-)
G1774139 prmt2 non-coding downstream 154082 9133349 ~ 9135269 (-)
G1774133 NA non-coding downstream 166102 9101752 ~ 9123249 (-)
G1774352 NA non-coding upstream 262059 9554024 ~ 9554342 (-)
fundc1 fundc1 non-coding upstream 343570 9635535 ~ 9737896 (-)
G1774395 NA non-coding upstream 359128 9651093 ~ 9651451 (-)
G1774410 NA non-coding upstream 375170 9667135 ~ 9667789 (-)
LOC110502107 grk1 other downstream 521304 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 other downstream 530811 8737175 ~ 8758540 (-)
LOC110501323 LOC106581977 other downstream 648213 8624815 ~ 8684792 (-)
G1777196 LOC100136012 other upstream 2549108 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2749143 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 2976252 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 3328617 12620582 ~ 12624860 (-)
G1774130 NA non-coding downstream 166891 9098972 ~ 9122388 (-)

Expression


Co-expression Network