LOC110501355 (LOC106581891)


Basic Information

Item Value
gene id LOC110501355
gene name LOC106581891
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9577907 ~ 9579194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578873.2
AACAGACGGGACATcagtgtagcagcagcaacaCAGCTCTCAGGAACAACTGCAATCATGATGGGCAAAATCACCTTCTACGAGGACAGGAACTTCCAGGGCCGTTCCTATGAGACCACCCAGGACTGCGCTGACATGTCCTCCTTCCTGAGCAGGTGTCACTCCTGCAGGGTTGACAGCGGTTGCTTCATGGTTTACGATCGTAACAACTACATGGGAAACCAGTACTTCATGAGGAGAGGCGAGTACCCTGACTACCAGCGCATGGGAATGGGAATGAACGACTGCATCCGGTCCTGCCGCATGATCCCCATGCACAAAGGAAACTTCAGGATGAGGATCTATGAGAGGGAGAACTTTGAAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGTATGTCCGACTGCCAGTCCTGCAACGTCATGGAGGGCCACTGGCTGATGTACGAGCAGCCCCACTACAGAGGCAGACAGATGTACATGAAGCCTGGAGAGTACAGGAGCTTCAGTCAGATGGGCATGGGAGGCATGAGGTTCATGAGCATGAGGCGTATCATGGATAATATGTCTATGTAACATGCTCAGATGTATGAAAAAAAGTTGAATAAAATATGTTCCCAATTTA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578873.2 True 646 mRNA 0.50 3 9577907 9579194

Neighbor

gene id symbol gene type direction distance location
LOC110501351 cask coding downstream 41991 9328988 ~ 9535916 (-)
rpl8 LOC106586796 coding downstream 285942 9289279 ~ 9291975 (-)
med14 LOC106581951 coding downstream 372798 9165404 ~ 9205109 (-)
si:ch211-218d20.15 LOC106581952 coding downstream 412602 9156919 ~ 9165305 (-)
gpr161a gpr161 coding downstream 514387 9044945 ~ 9063520 (-)
mao LOC106581942 coding upstream 20985 9600179 ~ 9663466 (-)
ndp ndp coding upstream 97489 9676683 ~ 9698024 (-)
efhc2 efhc2 coding upstream 134221 9713415 ~ 9734934 (-)
fundc1 fundc1 coding upstream 156048 9635535 ~ 9737896 (-)
dipk2b cssa21hxorf36 coding upstream 250128 9829206 ~ 9836013 (-)
G1774352 NA non-coding downstream 23565 9554024 ~ 9554342 (-)
G1774150 NA non-coding downstream 422069 9155383 ~ 9155838 (-)
G1774139 prmt2 non-coding downstream 442638 9133349 ~ 9135269 (-)
G1774395 NA non-coding upstream 71899 9651093 ~ 9651451 (-)
G1774410 NA non-coding upstream 87941 9667135 ~ 9667789 (-)
G1774463 NA non-coding upstream 195219 9774413 ~ 9774793 (-)
G1774133 NA other downstream 454658 9101752 ~ 9123249 (-)
LOC110502107 grk1 other downstream 809860 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 other downstream 819367 8737175 ~ 8758540 (-)
G1777196 LOC100136012 other upstream 2261879 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2461914 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 2689023 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 3041388 12620582 ~ 12624860 (-)

Expression


Co-expression Network