ndp (ndp)


Basic Information

Item Value
gene id ndp
gene name ndp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9676683 ~ 9698024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958690.1
tgagtgactgagtgagcagaacgagagggagggagagcagagagagacagagtgagcgaatgaaagagcgagggggagagcAGAGCTCACACGATCAGTCAGCGCaagtctgtgtgagagagacgaagagagaaggggagcaaGTGAAAGGGGGGACAGAGGTATTGAAAAGAGATTGTGGAAAGGAGACTCCACTGGCTGTGTCCGATCAGCCGCAGCTGTTGGAtattcctgtctttctgtctgcggTGGCCGGTTGAAGatccagacacacagacaggcgaTATGGTCCGGTGTGAGGACCCACAGACCAGACTGCAGCAGCACATTGGGCTAGGAGCTCCACGCCAATTCCATTAGAGACATTAGGACAAGGGACAGCCTCACTTTTTCACGTCAGTAAAGAgaacaggagaagaagaaaagaaagaaaagtcCCAGCGAGAAGAGAGACAAACGGACAAACAGAACAAAAAAAATCAgtgaacagagagaaagacagagggtgtccctctttctccctctttgtgTCACCTCTAAAGTTCCTCCGTGCCTCTTGGACTTTACCCCACTACTCCCTAACTCCTGTCCCACCCACCCCAGCACTCCCTGGCCCCAGTATGCGCCCCtcagcccccctctctccctcctcagggCTGGTGCTGTTGCTGGTTTTCTGCCCCCTATTGGTGGTAGTGCATGCCAGCAGCAGTAAGGCAGAGAACGGACACAGCACACACCTGGGAGACACAGACCCAGACCGCTGTATGAGGCATCACTTCGTAGAGACCATCACACACCCCATCTACAAGTGTAACTCCAAGATGGTTTTGCTGGCTCGGTGTGAGGGCCACTGCAGCCACACGTCCCGCTccgaccctctcatctccttcagtTCAGTGTTGAAGCAGCCCTTTAAGAGCACCTGTTCCTGCTGCAGGCCCCACACCTCCAAGCTGAAGGCTGTGAGGCTCCGCTGTGCCGGAGGGACACGCATCACCGCCACCTACCGCTACATCCTTGCCTGCAACTGTGAGGAGTGCAGCTGAGCAGAGAAAATAACATTTTAGAACTCTAGAAACGCTAGAACCGGCTCTTTGAGAGTTTCTACCCCTGTGAGTCTGCAGCTGTAAGGAGTGGAATCTTAGAACTCGAGAACTTGAAGAACCCACACCTTTGTAGAACCCTAGACCTGACCAATGGAACAGGACAGTGTTTTTGTCCCTGTATGATGATTCAAATGCCCTAACATCTCCGCTGGCCGTCATCTGCAAGTAGTGGAACCCTTAGTACCCTATGGAACTCTAAAACCTGTGAGTCTAGGCCCAACCCATGGACACATATAGAACCATCATGGCTGTTGGCGATAACGACTCCAGTGCCCCAACTGCTATCTGACCATAAATGTACAAGGAGAGGAGCCCTGGACTTTAGGAAAAGGGAtattggggaggggagggggatttAAGAACCATTGAGGAACCCCATGTACAATTTCATGGTTCTACTTGTGTTTCTAGGCCTGACTGAGAAGTCAGTCATGAGAACTTTAATTTGACTCTTTGTCAAActgcttttttttaaatcctaaATTCCCTACCTGTCAGTCTGGATCCAACTGCAAGACTGAGACCTGGGTTCCTATTCCTCTTCCAGTGGCTCAGTCCCCAACCGATGACCAATTAGGATCCCTGATCCCCAATTCTGTGTGTCTAGAACAAGCAGAACAATCAGTTCCTCAAGGTTCCCTGAAAGAGTAATTTCTGCTAATCCATCCGGGGTAGATGTGATTCCCCCGCATCCCAAGCAACCCTCCATTCCCTCCCATAAATTTAGACCATAAACAACTAACTGCTTTTTGGGTTTCAGCcaacctctcaccactcattacagGCAAAAACAACACATAAGCACACactcacatccacacacacatcccctctcttactacacacacacactctcaccagTCACCCATCATTACAGGCATCAATAAAGATATGGTGCCAACGTCATTAAAACCTACCAGTTcccaacaatacaacaacaaatgTCATTAAAGGCCCAAATCAGCCATTttcatatcaatatcaaatcattttttggttaacaattaagtaccttactgtaacagATTTACATTAAAATGAtcaaaaatagctttttagcaaaaACTATTTcgcaagcaagaattttgctaggactgtctgagggtggtctgagtggagagggggaaactgttattggcagagaggtttggaactttcTTTGATGTTGGTCTATTAAACAatttactgcatggtgatgtcaccatggaaagcccAAACTCCTATCCAGGCAAAAACGCTGATAGATTGtagattgtattttattttttcaggaaataacactgataacCTTTTTTCACACTTCtacagtgttagtttcaacagctgttgtacaatatgatatgaAACACAGGGAAAACTACATTttggactgcactgggcctttaaaagcAGCATGGGACAGAACAGGCCATGTATCCTACAATATATGCTGTATGTGTATTAACTGTTTTTAACTGCACCGGAGCCCCGTCTCCTAGGCAGACCATAAACATTTAGCACACTCAAACCCAGCCTTTCATCTATCTGTGTAAAACATGACTCTCAGAGGATAGACTCTTACAAAATGACCGGCAGCAGAGAGGCAGCAGAGTGGAGTATCCGGAGGGATATTCTGTTGATGCGAAGCCATTTTGTGGAGTAGCATATGCTCTCTAAAGGGAAAGGGTCTGTCAATGCTTATGTTAAATACTCTGTGCAACCGACAATATGGTTGCTGTTGATGTTGAAACTATTCATATTATTATCATGCCAGAGTTCATGATTACTGACAGGTTTTGCTCTCAGTAAGTAGTACTACTTTACTAATGATGCCATTTCAATACAAGGGGTTAGATACTTTGAGAAAGGGAACTGGTACGGCTTGTGCTGCTCACCAGTCACAGTTCAAAAACATCATTTTGCCTTACTCTGGATATGCGCAtgttcctctttagtgcatttaaGACAGTCCCAAACCATTGCATTTATCAGGAGTCGACTATTGTATCTAGCAGGTTAAGGTATGGGGGAGGGTTACATTTTGGAATAGAGTGgaatggacacaaacacacaaggcgcacacacacacacacacacactcactcacactcactcacactcactcctCTGAAATGCCTTTGTTCTTTGCTATGGCCTCAAACTGTACCCTCCCCTATGAAATCATACGATTTACTGGTCTGAGGATTTTTTAATGCAGCTCTCCGCTGACAGCACAACTGGCTGCTTCACACATGAACATAATAAAACACTCTTCCTTTGTTTCTA

Function

symbol description
ndp Predicted to enable cytokine activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in Norrie disease; X-linked exudative vitreoretinopathy 2; and retinopathy of prematurity. Orthologous to human NDP (norrin cystine knot growth factor NDP).

NR:

description
PREDICTED: norrin

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958690.1 True 3374 mRNA 0.46 3 9676683 9698024

Neighbor

gene id symbol gene type direction distance location
mao LOC106581942 coding downstream 13217 9600179 ~ 9663466 (-)
LOC110501355 LOC106581891 coding downstream 97489 9577907 ~ 9579194 (-)
LOC110501351 cask coding downstream 140767 9328988 ~ 9535916 (-)
rpl8 LOC106586796 coding downstream 384718 9289279 ~ 9291975 (-)
med14 LOC106581951 coding downstream 471574 9165404 ~ 9205109 (-)
efhc2 efhc2 coding upstream 15391 9713415 ~ 9734934 (-)
fundc1 fundc1 coding upstream 37218 9635535 ~ 9737896 (-)
dipk2b cssa21hxorf36 coding upstream 131298 9829206 ~ 9836013 (-)
LOC118943652 NA coding upstream 185646 9883670 ~ 9883794 (-)
LOC118943578 NA coding upstream 206026 9878934 ~ 9912343 (-)
G1774410 NA non-coding downstream 8894 9667135 ~ 9667789 (-)
G1774395 NA non-coding downstream 25232 9651093 ~ 9651451 (-)
G1774352 NA non-coding downstream 122341 9554024 ~ 9554342 (-)
si:ch211-218d20.15 LOC106581952 non-coding downstream 518241 9156919 ~ 9165305 (-)
G1774463 NA non-coding upstream 76389 9774413 ~ 9774793 (-)
G1774525 NA non-coding upstream 166729 9864753 ~ 9864963 (-)
G1774527 NA non-coding upstream 168360 9866384 ~ 9866827 (-)
G1774133 NA other downstream 553434 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 613482 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 908636 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 other downstream 918143 8737175 ~ 8758540 (-)
G1777196 LOC100136012 other upstream 2143049 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2343084 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 2570193 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 2922558 12620582 ~ 12624860 (-)

Expression


Co-expression Network