fundc1 (fundc1)


Basic Information

Item Value
gene id fundc1
gene name fundc1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9635535 ~ 9737896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578881.2
CCATCCTATCATGCCTGGGACAGCATTTGTCAACGTACAAGTCAGAgcactccaaaatggcggatcgTGAAGAGGACCCAGAGAATGAAGACGACACATGCGAGGTGATCTACCTGACAGAATATGCCAGACGTCAACAATGGTGGGGCCGCCTATTTGGTGGGAACAATTCGGGTCCTATGTCTGAGAAGTATTCGGTGGCCACACAAATAGCACTGGGGGGAGTGAGTGGCTGGTGTGCAGGATATCTTTTCCAGAAGGTGGGGAAGATCGCAGCCACCGCTGTGGGTGGAGGATTCCTGTTATTACAGATAGCCAACCACAGTGGCTATGTGCAGGTGGACTGGAAGAGAGTGGAAAAGGATGTCAACAAAGCCAAGAGACACCTGAAGAAGAATGCTGACAGGGCTGTACCAGAGTTTAACTCACTTATTGACCAGTCAACAGAGTTTGTGAAGACAAACGTAATCATCACCAGTGGATTCTTTGGAGGCTTTTTGCTTGGTCTGGCATCCTAAGATATAAAAATAGAGACCTGCAGTTTATTAAGGCTTTGTTTTGAGAGGTCTTGTCTGTCGTGCCCTTCTTAAATGGTGGTGGGAAAAACAAGAACAGATGCACAATATATCAAAATGAGCCAAAGTGTAATTACACAAACCACAAAAGGGTAGGGCACTTGtaaatactctgtaatgtgtaCCTACAGTTACACAATACCTACCCATGTATCTACCATGTAAATGCTAAATGCTTGGTTTTAGTGCCACTTGAAACTGTAACCAAGATTTTCTGCTTCTCCACCGAATAAACAAAACCATGTTTCTAGTCAGGCTTCAGCTCTGATTCAAGAAAATCGGGCATGACCTAAAAGGAGTCAGTGGGTCTTGTCTCATTCAATTGCTTTGAGCGGGTGCTGGAGCTCAAAGTGCGTACTTACATGTATTTAAAACAGATAGGAAGACGCCACACATTGCAATCTAAGCTGTATTTATTGAGATCGACCTTGTGGTCCATCATACTCCCTTGCATCCCGTAGAAGTATACGTACAGTGTACTGTTGCATTGGTTACATGTACACACCTTATTGGGCTGTAATTCTGGACCTTATTGATTACATTTGGGCCCAGTTCTTTTCCAGTTCATTTGtttatattgttatttttgtCAATAGTCCTACACCGCTAGTATACTCAAGTCATGCAGTGCATCATGTTGCTCAGGAAACTATGCATGACATGTCATTTTCATTGTATGCATTAATTCTTCAGTCACGTTATATTGAGTGATTTAGGATTACTATGACAATATATTATGTTGTCTTTACAAGCAGTGCAATATTTGCTTAGAGGTAGTGTAGCCTCTTCTCTTTCACAGAAAAGCTATTTACCTTTGTTATTGAATGACAGTGTTGTTGTACTTTGTGTATATATCCTTAATAAAAGACAATGCAGCAA
>TU2032074
CAGTTCTTTTCCAGTTCATTTGtttatattgttatttttgtCAATAGTCCTACACCGCTAGTATACTCAAGTCATGCAGTGCATCATGTTGCTCAGGAAACTATGCATGACATGTCATTTTCATTGTATGCATTAATTCTTCAGTCACGTTATATTGAGTGATTTAGGATTACTATGACAATATATTATGTTGTCTTTACAAGCAGTGCAATATTTGCTTAGAGGTAGTGTAGCCTCTTCTCTTTCACAGAAAAGCTATTTACCTTTGTTATTGAATGACAGTGTTGTTGTACTTTTGTCTCTTATAGTTTAACTGGGAATTAAGCTATAGCAGCATTAATCACTGCATTGTTGAGTTTTTTTGTGGAATGAAATCAATGTCTCTACTTCCAAGTAAAAAGGGAAACAACCATTGGCCATATTGCAGGGCAATTTTGATATACCATTTATCACAAAGTTATTTATTTATCACTTCCCTTAATCTTTCAGAGATTCTGCCTCTCTcaggctcttctctctctctctctctattctctcttttcAGCTAGAAAAAAGGCATCAGACAAACTGCATGTGTCCATAATATTCTTAGATGCTCAGCTGCTCATTTCATTTCATGTATTTCATAACACACTCATTGTTGT
>TU2032076
GTCAGAgcactccaaaatggcggatcgTGAAGAGGCTCAACCTTGTTTGTCTCCCAAGACCCAGAGAATGAAGACGACACATGCGAGGTGATCTACCTGACAGAATATGCCAGACGTCAACAATGGTGGGGCCGCCTATTTGGTGGGAACAATTCGGGTCCTATGTCTGAGAAGTATTCGGTGGCCACACAAATAGCACTGGGGGGAGTGAGTGGCTGGTGTGCAGGATATCTTTTCCAGAAGGTGGGGAAGATCGCAGCCACCGCTGTGGGTGGAGGATTCCTGTTATTACAGATAGCCAACCACAGTGGCTATGTGCAGGTGGACTGGAAGAGAGTGGAAAAGGATGTCAACAAAGCCAAGAGACACCTGAAGAAGAATGCTGACAGGGCTGTACCAGAGTTTAACTCACTTATTGACCAGTCAACAGAGTTTGTGAAGACAAACGTAATCATCACCAGTGGATTCTTTGGAGGCTTTTTGCTTGGTCTGGCATCCTAAGATATAAAAATAGAGACCTGCAGTTTATTAAGGCTTTGTTTTGAGAGGTCTTGTCTGTCGTGCCCTTCTTAAATGGTGGTGGGAAAAACAAGAACAGATGCACAATATATCAAAATGAGCCAAAGTGTAATTACACAAACCACAAAAGGGTAGGGCACTTGtaaatactctgtaatgtgtaCCTACAGTTACACAATACCTACCCATGTATCTACCATGTAAATGCTAAATGCTTGGTTTTAGTGCCACTTGAAACTGTAACCAAGATTTTCTGCTTCTCCACCGAATAAACAAAACCATGTTTCTAGTCAGGCTTCAGCTCTGATTCAAGAAAATCGGGCATGACCTAAAAGGAGTCAGTGGGTCTTGTCTCATTCAATTGCTTTGAGCGGGTGCTGGAGCTCAAAGTGCGTACTTACATGTATTTAAAACAGATAGGAAGACGCCACACATTGCAATCTAAGCTGTATTTATTGAGATCGACCTTGTGGTCCATCATACTCCCTTGCATCCCGTAGAAGTATACGTACAGTGTACTGTTGCATTGGTTACATGTACACACCTTATTGGGCTGTAATTCTGGACCTTATTGATTACATTTGGGCCCAGTTCTTTTCCAGTTCATTTGtttatattgttatttttgtCAATAGTCCTACACCGCTAGTATACTCAAGTCATGCAGTGCATCATGTTGCTCAGGAAACTATGCATGACATGTCATTTTCATTGTATGCATTAATTCTTCAGTCACGTTATATTGAGTGATTTAGGATTACTATGACAATATATTATGTTGTCTTTACAAGCAGTGCAATATTTGCTTAGAGGTAGTGTAGCCTCTTCTCTTTCACAGAAAAGCTATTTACCTTTGTTATTGAATGACAGTGTTGTTGTACTTTGTGTATATATCCTTAATAAAAGACAATGCAGCAA

Function

symbol description
fundc1 Predicted to be involved in autophagy of mitochondrion and response to hypoxia. Predicted to act upstream of or within autophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in several structures, including blastomere; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FUNDC1 (FUN14 domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578881.2 False 1454 mRNA 0.42 5 9735242 9737896
TU2032074 False 644 lncRNA 0.34 2 9635535 9735571
TU2032076 True 1437 TUCP 0.42 5 9735242 9737856

Neighbor

gene id symbol gene type direction distance location
efhc2 efhc2 coding downstream 308 9713415 ~ 9734934 (-)
ndp ndp coding downstream 37218 9676683 ~ 9698024 (-)
mao LOC106581942 coding downstream 71776 9600179 ~ 9663466 (-)
LOC110501355 LOC106581891 coding downstream 156048 9577907 ~ 9579194 (-)
LOC110501351 cask coding downstream 199326 9328988 ~ 9535916 (-)
dipk2b cssa21hxorf36 coding upstream 91426 9829206 ~ 9836013 (-)
LOC118943652 NA coding upstream 145774 9883670 ~ 9883794 (-)
LOC118943578 NA coding upstream 166154 9878934 ~ 9912343 (-)
slc35a5 slc35a5 coding upstream 331647 10069543 ~ 10081799 (-)
vwa8 vwa8 coding upstream 405051 10142947 ~ 10236029 (-)
G1774410 NA non-coding downstream 67453 9667135 ~ 9667789 (-)
G1774395 NA non-coding downstream 83791 9651093 ~ 9651451 (-)
G1774352 NA non-coding downstream 180900 9554024 ~ 9554342 (-)
G1774463 NA non-coding upstream 36517 9774413 ~ 9774793 (-)
G1774525 NA non-coding upstream 126857 9864753 ~ 9864963 (-)
G1774527 NA non-coding upstream 128488 9866384 ~ 9866827 (-)
G1774528 NA non-coding upstream 129640 9867536 ~ 9867742 (-)
rpl8 LOC106586796 other downstream 443267 9289279 ~ 9291975 (-)
G1774133 NA other downstream 611993 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 672041 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 967195 8763292 ~ 8768047 (-)
LOC110501325 LOC106581976 other downstream 976702 8737175 ~ 8758540 (-)
G1777196 LOC100136012 other upstream 2103177 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2303212 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 2530321 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 2882686 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 3430884 13168780 ~ 13172979 (-)
med14 LOC106581951 coding downstream 430426 9165404 ~ 9205109 (-)
si:ch211-218d20.15 LOC106581952 coding downstream 470230 9156919 ~ 9165305 (-)
G1774150 NA non-coding downstream 479697 9155383 ~ 9155838 (-)
G1774139 prmt2 non-coding downstream 500266 9133349 ~ 9135269 (-)

Expression


Co-expression Network