LOC118943578


Basic Information

Item Value
gene id LOC118943578
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 9878934 ~ 9912343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038788.1
aggaagggagggggaagagacaaGCCAGCGGAGGGAGCAGAGACAAAGCTTGCTGACGGAGGAAGTGAAGTGTGCTCTGCAGCATGTGGACCATGTGCTCAGCAGATAACTGCCGAGTGTCGAGCCCACGGAAGGTGTCTGCAACCAGGGGCTCTCTGCTGCACAGCTGTCGGTGTTTGGAGCAGCAAGGAGCGGAGGAAGGAGCCTCGACCCTGGAGACAGACAACCACAAAAACCTGTCCATCAGAACCTGAAATCGTCAAGATGACATGGTGGAGACATCCTTCTACAGGTAATTGGTCTTTTTCTAGCTGTTATACAGAGTTTATGGAGGATGACATTTGCCTGTTTGTCCAGACCCTCCGATGTAGGCTTTCAAATgaaacctcttgactttttccacgtttcgttacagctttattctaaaattgattaaaatgttttttcccccctcatcaatgtacacacaatacaccata
>TU2032193
ggaagagacaaGCCAGCGGAGGGAGCAGAGACAAAGCTTGCTGACGGAGGAAGTGAAGTGTGCTCTGCAGCATGTGGACCATGTGCTCAGATAACTGCCGAGTGTCGAGCCCACGGAAGGTGTCTGCAACCAGGGGCTCTCTGCTGCACAGCTGTCGGTGTTTGGAGCAGCAAGGAGCGGAGGAAGGAGCCTCGACCCTGGAGACAGACAACCACAAAAACCTGTCCATCAGAACCTGAAATCGTCAAGATGACATGGTGGAGACATCCTTCTACAGGTGTCAGAGCAGTCCTGAGTGTACCAAGCCACAGTCACCAGGGTGACTCACAACAGCACTGTGCTGTCAGCCGCCCTGCTGACCTTCAACTACCTCTAGACATCAGCTATCCTCGTTCTAGCATCTGTCTACAGaATGGACCCAATTATCATATGAGGATGACGACCATGATGAAGGCAATGCAATTTCATCAATGTGGATCCTTTATCTATATCTGCAGCCCATTCCCTctatctaacccccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038788.1 False 479 mRNA 0.49 3 9904050 9912343
TU2032193 True 523 lncRNA 0.53 5 9878934 9912331

Neighbor

gene id symbol gene type direction distance location
LOC118943652 NA coding downstream 20256 9883670 ~ 9883794 (-)
dipk2b cssa21hxorf36 coding downstream 68037 9829206 ~ 9836013 (-)
fundc1 fundc1 coding downstream 166154 9635535 ~ 9737896 (-)
efhc2 efhc2 coding downstream 169116 9713415 ~ 9734934 (-)
ndp ndp coding downstream 206026 9676683 ~ 9698024 (-)
slc35a5 slc35a5 coding upstream 157200 10069543 ~ 10081799 (-)
vwa8 vwa8 coding upstream 230604 10142947 ~ 10236029 (-)
calcrla LOC106581932 coding upstream 527332 10439675 ~ 10498177 (-)
LOC110501376 LOC106581931 coding upstream 590207 10502550 ~ 10551497 (-)
col5a2a LOC106581929 coding upstream 862924 10775267 ~ 10840532 (-)
G1774497 NA non-coding downstream 25246 9878264 ~ 9878804 (-)
G1774528 NA non-coding downstream 36308 9867536 ~ 9867742 (-)
G1774527 NA non-coding downstream 37223 9866384 ~ 9866827 (-)
G1774525 NA non-coding downstream 39087 9864753 ~ 9864963 (-)
G1774550 NA non-coding upstream 19196 9931539 ~ 9967968 (-)
G1774636 NA non-coding upstream 133276 10045619 ~ 10047479 (-)
G1774615 NA non-coding upstream 169492 10081835 ~ 10083284 (-)
G1774618 LOC106581936 non-coding upstream 177626 10089969 ~ 10091266 (-)
G1774612 LOC106581936 non-coding upstream 187835 10100178 ~ 10101427 (-)
rpl8 LOC106586796 other downstream 612075 9289279 ~ 9291975 (-)
G1774133 NA other downstream 780801 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 840849 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 1136003 8763292 ~ 8768047 (-)
G1777196 LOC100136012 other upstream 1928730 11841073 ~ 11843059 (-)
G1777286 NA other upstream 2128765 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 2355874 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 2708239 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 3256437 13168780 ~ 13172979 (-)
mao LOC106581942 coding downstream 215468 9600179 ~ 9663466 (-)

Expression


Co-expression Network