LOC110501376 (LOC106581931)


Basic Information

Item Value
gene id LOC110501376
gene name LOC106581931
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 10502550 ~ 10551497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578899.2
ATAGTCTATTATCAACCGGAAGTGCATGGGTGAACTGCTACTACCGTCAGTCTCTTGAAGAAAAGTTCATTAAGTTTTCACACCACaactttactgtagtctactctccgAACGCTGATATGGCTGCAATGAGTAGCTGGTTGATTTCATGCATTGTTTTAGTTCATTTCGCTTATTTGGGATCTTGTGATTCGGGCTCTGAAATAGATGGAGCCCAGCCCGAGCTCTTCATTTTCCACGAGTTGTGTGCCCTAAAGAAGGATGAAGGGCCCTGCAAGGTGTTAAAGGAGCGCTTCTATTTCGAAATTGACACGGGCCACTGCGAGTCCTTTGAGTTCGGTGGCTGCAGAGGCAACGCCAACAATTTTGAGACCTTGGAAGCTTGTGAGGGAATGTGCCTGGTGTCTGCTGACAAGAGTCCCTGTCACCTGGATGAGGCTCCGGGGCCATGCCGAGGTCTGGTGACGCGCTACTTCTTTGACAGCCAGAGCCAGGAGTGCAAGCACTTCTACTACGGAGGCTGCTTCGGCAACGCCAATAACTTCAAGAGTATGAAAGAGTGCCGGGCCAGGTGCCAGAACCCAGATGAGTTTGCTTTAAGCGCCTCCCACATGCAGCAGAATCATCAACACCAGGCCGCAGACTTCAGTCCTCCAGAGTTCTGTCTCAGTACCAATGACAAGGGCACGATgtgtgacagagaggagaggagaacgggAAGGAGATATGCGTACAACCCCAAGACAAAGAGATGTCATTGGTTGCGTAACAGGGGCTGTGGGGGCAACAAGAACAACTTTGTCCTCAAGAGACACTGCATGAAGATGTGTATGAGGCCGAATCCCACTCACAAAAGGAAGACCATCAGGATAAAGAAGAACACCAACATCTTATTTCAAACTGTCTAAATCAAGGCCTTGTATTAAATCATTCTTACACTACTTTTTAATTACACTTTCTTTTTTTATTCTTATTTGACTGTGGTATTATGTTGTCGTCTTACAGCAATTGTATAAAAGGCTTGTTTTGGCCTATTATGTAATTTTGTTATTTTAACCTTTTAGCTCTTTGTAAGAGGAGTGGTTTTGTAATATCAAAATTGTAGACATTTTTTCCCTTGTCACATCCTAAAAAACGGTATATCATTGTAATTTTTTTCCTGAGGACACCAGACAAGTTTTGTTTTTATTGACAAATGATTAACATTAAGGAACCCAATAGCACTGCACTGCCCATGAAATATAAAGCTCTATCATTTACATGATCAGTGTAAGTATTTAAGATCATTCCTTCATGTGAGTAAATGCACACTTACATTTTTTTAACATGGTTGGAAAGAACATATATAATCAACCAATTGGAGTCTAAATAAAATGTTGCATAGTCATCCACATTGCATTTCTGGATATTTTCATTCTGTTCAAAGCACCCTTTTATATTGCATTATGTATGCAATTGGAATTTGCTCCGCTGATAAGACTGTTATTCAGACACAAGGGGGCAGTGTTGTCTTATCAGAATAGGCTATAATTTCCATATCATAGACTCTATACAGgatccttaaccctaacctcaaccgtaacccttaccttaaaggtcatgaacagtaaaaatcatgtttttcattaAATTGGAggatatttggatgaaaccagatAAAAGAATGCGGACCAAAATATTAAAAAATGAATGTTGCTTCTAcaaagtttgatcataaagttactggtccccttcgccatgtcaaacacttggattcaggaGGCAGTTttattaagggaatagggtgacctCCCCCTAACTCACATTTTAATACActaatggtaacatgatatttacctaatttaaataagtactGCATTGTAACCAACATAGGAGAAGGTGTGCTTGCAGAGAGATATGGTTTACATAGCTAGAAAGCTATTCTACTGGTGCCAAAATTTGACTGGAGGGTGTTAGCAAATATAATTAAAAGTTTACCTTATT
>XM_021578898.2
AATAGTCTATTATCAACCGGAAGTGCATGGGTGAACTGCTACTACCGTCAGTCTCTTGAAGAAAAGTTCATTAAGTTTTCACACCACaactttactgtagtctactctccgAACGCTGATATGGCTGCAATGAGTAGCTGGTTGATTTCATGCATTGTTTTAGTTCATTTCGCTTATTTGGGATCTTGTGATTCGGGCTCTGAAATAGCAGATGGAGCCCAGCCCGAGCTCTTCATTTTCCACGAGTTGTGTGCCCTAAAGAAGGATGAAGGGCCCTGCAAGGTGTTAAAGGAGCGCTTCTATTTCGAAATTGACACGGGCCACTGCGAGTCCTTTGAGTTCGGTGGCTGCAGAGGCAACGCCAACAATTTTGAGACCTTGGAAGCTTGTGAGGGAATGTGCCTGGTGTCTGCTGACAAGAGTCCCTGTCACCTGGATGAGGCTCCGGGGCCATGCCGAGGTCTGGTGACGCGCTACTTCTTTGACAGCCAGAGCCAGGAGTGCAAGCACTTCTACTACGGAGGCTGCTTCGGCAACGCCAATAACTTCAAGAGTATGAAAGAGTGCCGGGCCAGGTGCCAGAACCCAGATGAGTTTGCTTTAAGCGCCTCCCACATGCAGCAGAATCATCAACACCAGGCCGCAGACTTCAGTCCTCCAGAGTTCTGTCTCAGTACCAATGACAAGGGCACGATgtgtgacagagaggagaggagaacgggAAGGAGATATGCGTACAACCCCAAGACAAAGAGATGTCATTGGTTGCGTAACAGGGGCTGTGGGGGCAACAAGAACAACTTTGTCCTCAAGAGACACTGCATGAAGATGTGTATGAGGCCGAATCCCACTCACAAAAGGAAGACCATCAGGATAAAGAAGAACACCAACATCTTATTTCAAACTGTCTAAATCAAGGCCTTGTATTAAATCATTCTTACACTACTTTTTAATTACACTTTCTTTTTTTATTCTTATTTGACTGTGGTATTATGTTGTCGTCTTACAGCAATTGTATAAAAGGCTTGTTTTGGCCTATTATGTAATTTTGTTATTTTAACCTTTTAGCTCTTTGTAAGAGGAGTGGTTTTGTAATATCAAAATTGTAGACATTTTTTCCCTTGTCACATCCTAAAAAACGGTATATCATTGTAATTTTTTTCCTGAGGACACCAGACAAGTTTTGTTTTTATTGACAAATGATTAACATTAAGGAACCCAATAGCACTGCACTGCCCATGAAATATAAAGCTCTATCATTTACATGATCAGTGTAAGTATTTAAGATCATTCCTTCATGTGAGTAAATGCACACTTACATTTTTTTAACATGGTTGGAAAGAACATATATAATCAACCAATTGGAGTCTAAATAAAATGTTGCATAGTCATCCACATTGCATTTCTGGATATTTTCATTCTGTTCAAAGCACCCTTTTATATTGCATTATGTATGCAATTGGAATTTGCTCCGCTGATAAGACTGTTATTCAGACACAAGGGGGCAGTGTTGTCTTATCAGAATAGGCTATAATTTCCATATCATAGACTCTATACAGgatccttaaccctaacctcaaccgtaacccttaccttaaaggtcatgaacagtaaaaatcatgtttttcattaAATTGGAggatatttggatgaaaccagatAAAAGAATGCGGACCAAAATATTAAAAAATGAATGTTGCTTCTAcaaagtttgatcataaagttactggtccccttcgccatgtcaaacacttggattcaggaGGCAGTTttattaagggaatagggtgacctCCCCCTAACTCACATTTTAATACActaatggtaacatgatatttacctaatttaaataagtactGCATTGTAACCAACATAGGAGAAGGTGTGCTTGCAGAGAGATATGGTTTACATAGCTAGAAAGCTATTCTACTGGTGCCAAAATTTGACTGGAGGGTGTTAGCAAATATAATTAAAAGTTTACCTTATT

Function

NR:

description
tissue factor pathway inhibitor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578899.2 False 1983 mRNA 0.40 6 10502550 10551496
XM_021578898.2 True 1987 mRNA 0.40 6 10502550 10551497

Neighbor

gene id symbol gene type direction distance location
calcrla LOC106581932 coding downstream 4373 10439675 ~ 10498177 (-)
vwa8 vwa8 coding downstream 266521 10142947 ~ 10236029 (-)
slc35a5 slc35a5 coding downstream 420751 10069543 ~ 10081799 (-)
LOC118943578 NA coding downstream 590207 9878934 ~ 9912343 (-)
LOC118943652 NA coding downstream 618756 9883670 ~ 9883794 (-)
col5a2a LOC106581929 coding upstream 223770 10775267 ~ 10840532 (-)
LOC110501381 NA coding upstream 425776 10977273 ~ 10984214 (-)
igfbp5 igfbp5 coding upstream 488004 11039501 ~ 11054592 (-)
tns1b LOC100286503 coding upstream 935411 11486908 ~ 11791569 (-)
LOC110501383 LOC106581884 coding upstream 1264753 11816250 ~ 11819211 (-)
G1774889 NA non-coding downstream 560 10501773 ~ 10501990 (-)
G1774843 NA non-coding downstream 67165 10434944 ~ 10435385 (-)
G1774770 NA non-coding downstream 164626 10332051 ~ 10337924 (-)
G1774771 NA non-coding downstream 169307 10332649 ~ 10333243 (-)
G1774927 NA non-coding upstream 31539 10583036 ~ 10608915 (-)
G1775003 NA non-coding upstream 116223 10667720 ~ 10690940 (-)
G1775080 NA non-coding upstream 242217 10793714 ~ 10798821 (-)
G1775227 NA non-coding upstream 325099 10876596 ~ 10876820 (-)
G1775228 NA non-coding upstream 325759 10877256 ~ 10877554 (-)
fundc1 fundc1 other downstream 764694 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 1210575 9289279 ~ 9291975 (-)
G1774133 NA other downstream 1379301 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 1439349 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 1734503 8763292 ~ 8768047 (-)
G1777196 LOC100136012 other upstream 1289576 11841073 ~ 11843059 (-)
G1777286 NA other upstream 1489611 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 1716720 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 2069085 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 2617283 13168780 ~ 13172979 (-)

Expression


Co-expression Network