col5a2a (LOC106581929)


Basic Information

Item Value
gene id col5a2a
gene name LOC106581929
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 10775267 ~ 10840532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578900.2
AAGCTGTAACTACCCAAAAAAGCACTCGTGCAGTCTGGGTTGGGTCTGCCTTGCTCGCTGCTTATTGGAAGTGTTCTCTGGCTACATGGTACAGTGATAACCTGGGCATTTCTCATCCCTTTTTTCCCACTTTGTGCACAAGTAGAGCCCATGTCTTTGTTGTAGACATGATGAGCTTTGTGCATTCAAGGATTTGCCTTTTTCTGGTTGTCTCTGTGGCTCAGGTTTTGTTTGTGAAATGCCAGGATGGAAACAGTGGAGATGACGCGGGCTGCACGGTTGATGGCCAGGTGTACACCAACCGAGACATTTGGAAACCAGAGCCATGTAGGATCTGCGTGTGCGACAGCGGCTCCGTCCTATGTGACGAGATCCAGTGCGATGAGCTGTCCAACTGTGAGAAGGTGACCATCCCCGAGGGCGAGTGCTGTCCCATCTGCCAGAGCGAGGGCGGCTCAGACACCACTGGCAACGGCAGACCTGATGGTGGCAGAGTCTACAGGGGTCagaaaggagaacctggagaagtGCCACAGGTGACAGGGATCAGAGGTCGTCCTGGGCCTATGGGGCCTCCCGGATCGCCAGGATTCAGAGGGGACCGAGGACAGAAAGGAAGACCTGGGCTACGTGGAGCAGCAGGATATGACGGAGAGCCTGGTGTGCCTGGAAATCCAGGAGAACCCGGACCTGCAGGAAACCAGGGTCCACCAGGGGGACTGGGAGCTCAGATGGCTGGAGGCTTTGGGGATGAGAAATCTGCCGGCCAAACGGCCATGGTGCCAGGAACTAGTGGGGAAGCAGGAGCAAGAGGACCTCCTGGGCCAAATGGAAACCCTggccatGCTGGACCACAAGGACCCCCTGGGGAAGTCGGTGATCCAGGTCACATGGGTACATCTGGACAAAGGGGACCTGAAGGTCCACCGGGAAAGCCGGGTGAAGACGGAGAAGGAGGAAAACCAGGAAATCCGGGAGAGATGGGATTCCCTGGATCAGCGGGAGCTCGAGGATTTCCAGGGACACCTGGGCCTCCCGGATTGAAAGGCCATAGAGGTCACACAGGTCCAATTGGTCTAAGAGGTGAAACTGGAACTGTAGGATCCAAGGGTGCATTAGGTCCCACTGGTCCGATTGGCACACCTGGCCCTATGGGCCCTAGAGGCATGCCTGGGGAGAGAGGTCGCTTAGGAGCAAATGGAGTGCCGGGAATGAAAGGTCCTCCTGGGAACATTGGTAAATCTGGTCCGATGGGTCCATTAGGTATCAATGGTCCCCCAGGTTATCCAGGAATTCCAGGAATGAAGGGCCAACCTGGTGCCACAGGAGTGCGGGGGCCCGAGGGgcaacagggacagagaggcgaGACAGGACACCAAGGCAGGGCAGGATCTACTGGCCAACAAGGTCCTTCAGGAACAGACGGGGGGCCAGGTACTAAGGGTCCAGTGGGTACTATGGGTGTGCAGGGTCCCGGGGGTCACCTCGGCCCCCATGGTCCACCCGGACCTCAGGGAAGCACTGGACAGCCTGGGATCAAAGGTCAACTGGGAGATGTTGGTATACCTGGGTACAAAGGAGAGGCCGGACCCAAAGGAGAACCTGGTCCCCCTGGTTCCCAAGGAGTAATCGGGCCgcagggggaggagggaaagagaggaactCGGGGTGACTCTGGCTCACTAGGACCACCCGGTCCTGTTGGTGAGAGGGGGTCTCTTGGTAACAGAGGTTTCCCTGGTGCTGATGGATTACCTGGACCTAAGGGTGCTCAAGGAGATCGTGGACTTTCTGGCATATCTGGGCCTAAAGGTTCCGGAGGGGATCCCGGGCGCACTGGTGAACCCGGCCTCCCAGGCGCACGGGGTCTGACTGGCACTCCGGGAGTCCAGGGAGCAGAGGGCAAACCAGGACCACTGGGTCCAGCAGGAGAAGATGGCCGCCCAGGACCAGCAGGGTCGATTGGAACCAGAGGTCCTGCAGGAACCATGGGAACACCTGGACCAAAGGGCTTTAACGGAGACCCAGGGAAGACAGGCGAACAAGGATCTCTGGGAGTGGCAGGACAAAGAGGTCCTCCTGGGAAAGAGGGGGAAGTTGGCCCTGCCGGTCCCGCTGGCCCTTCGGGCGTTGCAGGTGAAAGAGGAGAACAGGGACCACCTGGAGTGAATGGTTTCCAGGGATTACCTGGACCCCCAGGCCCTCCTGGAGAGTCAGGAAAACCAGGTGATCTGGGTATCCCTGGAGAAGGAGGGGCTGTTGGCCAGATTGGACCAAGGGGAGAGCGTGGAAtcccaggggagagaggagaactcGGACCTCTCGGTTTGGCTGGAGCCAAGGGAATCCCCGGAGCACCAGGACCCGATGGACCAAAGGGTAGTCCTGGTCCCACTGGTAGTCTTGGTGACCTAGGCCCTCCTGGTCTTCAGGGGATGCCTGGCGAGCGAGGGATCTCTGGTTCTCCTGGGCCTAAAGGCGACAGAGGGTCTGGTGGAGAGAAGGGATCAGAAGGTACACCTGGAAATGATGGCGCAAGAGGTCTTCCTGGTCCTCTCGGCCCACCCGGACCCAATGGACCTAGCGGTGAAAAAGGAGAAGCTGGACCTAAAGGTCCTCCCGGGCCTCATGGATCAAGAGCTATGCCTGGACCCCGTGGTGAACCTGGTCCTATTGGTCCCGTTGGGTTTGGTGGACCACCCGGACCTGATGGTCAACCAGGAGTCAAGGGGGAGCCTGGAGAGCCTGGTCAGAAGGGTGATGCTGGTTCTCCAGGGCCTCAGGGCTTGGCTGGATCCCATGGACCTCCTGGTATTGTCGGTGTGGCTGGACTGAAGGGTGGAAGAGGAACCCAGGGTGCACCTGGCCCCACTGGTTTCCCTGGATCTGCAGGCAGGGTTGGACCACCAGGCTCAACTGGTCCAGTTGGAGAGGCTGGACCCCTAGGTTCCCCTGGGAAAGAGGGTCCTCCTGGCCTTCGTGGAGAGAATGGATCCCCTGGAAGACAAGGAGAAAGAGGCCCCCCAGGACCAGCCGGGGGCTCAGGAGACAAAGGAGACTCTGGGGAAGACGGACCCACGGGTCCTGATGGACCTCCAGGTCCAGCCGGAACAACAGGACAGAGAGGCATTGTGGGTCTTCCTGGTCAGAGGGGAGAGCGTGGAATGCTGGGACTTCCAGGACCAGCAGGTCCTCCAGGAAAACAGGGGACTGCAGGACCTGGGGGAGACAAAGGCCCCACTGGCCCGATCGGTTCTCCTGGTGCCAACGGACCTCGTGGTGATCCTGGTCCCAATGGTCCTGCTGGATCTGATGGGCCTCCAGGCAAAGATGGAGTCATTGGTCAAAGGGGAGATCGAGGGGACCATGGTCCAGAGGGTCTGGTTGGGACCCCAGGACAACCAGGAACTCCAGGTCCAGTCGGTGCCACCGGTGGTTCTGGAAAGAGAGGAGACGCTGGTTCCAGAGGACCAAACGGTCCACCTGGTTCAGCAGGAAAGAGAGGGTTAACGGGACCACAAGGACCAAGGGGTGATAAGGGTGACCTCGGAGACCATGGAGATAGAGGACAGAAAGGACACAGAGGTTTCACCGGTTTGCAGGGTCTACCTGGACCACCTGGTACAACAGGAGAGCAGGGAGCATcaggaatcatcggaccaagcGGTCAAAGAGGACCCCCTGGACCAGTTGGACCTCCAGGAAAAGAAGGGTACATCGGACAACCTGGACCAATGGGACCTCCTGGAACCCGTGGAATTAGTGGCGAAATCGGACCTGAGGGACCTCCCGGAGAGCCTGGTCCCAATGGTCCTCCCGGGCCTCCCGGACCCCCCACAGCTGCCATGGATGACCTATTTGGCGGCATGCACGACTATGATGCTGGCCCCCCTCCTCCAGAGTTCAATGAGGATGAGGCTCTGCCCAACAGCAATGCCACTCAGCAGCTGGACCCAGGTGTTCAGGCCACTCTGAAGGCCCTCAGCAGCCAGATCGACAGCATGAAAAGCCCAGACGGCAGCAGGAAGCACCCGGCTAGGACCTGTGAGGACTTGAAGCAGTGCTACCCACTGAAGAAGAGCGGTGAATACTGGGTCGATCCAAACCAAGGAAGCTCAGAGGATGCTATCAAAGTACATTGTAATATGGAGACGGGAGAGACTTGCATCTCAGCCAACCCCGCCAGCATACCTAAGAAAGTATGGTGGAGCACCTCAAGGAAGAAGCCTGTGTGGTTTGGAGCTGATATCAATAGAGGAACACAATTCACCTATGGTAACAAAGATCAACCTGCCAACTCGGTCACCGTCCAGATGACATTCATCCGTCTGCTCTCCAAAGAGGCTTCTCAGACCATCACCTACCACTGCAAGAACACAGTGGGCTACAAGGATGAGGCGACTGGGAACCTAAAGAAAGCAGTCATCCTCAAGGGGTCGAATGACCTGGAGCTCAAGGCAGAGGGAAACAACCGCTTCAGATACACCGTGGTGGAGGACAGTTGTGGACAATCCAATGGTAAATGGGGCAAGACAGTGTTTGAGTACAGGACACAGAAAACAGCCAGACTACCAATCATGGATATGGCCCCTGTGGACATCGGTGGTTCGAATCAGGAGTTTGGTATCGATATTGGGCCAGTTTGCTTCCTATAAAAGCCAACAACAACAGGGATGCATGGAAGAGAATCCAGAGACTCTTGAAATGACAGCTGACACGATCAGCCATGTACATACAAGTACTGGTGGACTATTCTCGCCCCGTAGCAAGATATTTATTGTGCCTTTCCAACCTTTCCAACCTTACGTTAGATGAATGTTTGGGAGAAATAAAGAGCAAGCAAGCAACATTTAGAAACTTTGCTTGCACTTGAGAAATATAGTATGAGCATGTTTCATCTGTAATTACCTTTAGTTCATGCCAAGGTACAAAGATCCAGTGCATTGATACAATATTAGGTTTTATGGAACGAAGATAAAAAGCTGCCAAAAGTCCTAGACAAATATGAATGCTTTACCAAAAATGTAGTCGTTAACTGCTGTTCATAAGATGAGAGCTTCATTCTGTAAGGATATAACTACAATGGTTAATTCCACCTCTTAGATTTCCTAACCTCTTGTGTTACATAATTAGTACaaaaaaacatgtaaagtgttttcaATGTCCAATGAACATTTATGGTGCTATTGAGGAAATGAATTCAGCTAAATGCTTTCATTGGCACACGTTGTTTTTTCTTTCCAGAACAGAAAGAGTTTAATACAACTGATGTCTGCATCCAAGTTATCAATTCTGTACTGACTCCATTGaatacaaattaaaaatcgaaccAGACAGTTGATTCCTCAGTGTTAGCTACCTCGTCGCCACAAACTGGGATGCCACAGGTTTGGTGCTGTCTGTAAGTGTTGACCATGTGCTCCTCTCCCAGCTACGGTACAGGATAGGGTTTGCGGCTAAAAATAAAGATGGAGAGGTGGAATCGGTTTCTCCTGAAAAGTGTGGTGATTGTGAAAGAAgaatttcctttttttttttttttttaatgaatttgtggTCATTTTAAAACGGAGTGTGTTATATTTTAAATTCATGATCGTTTTAACACTACAAGTGCGTAATGATTTTTCTGCATGTTGTCCTTTAAGCCACTTCCTCGTAGTTTTATTTTATAGCAGCTTTTGAGACATTCAATAAGATGAAAAGCCTATTTGCTTCATGTATTTTTGCTGTGCAACAAATTAAACAAAAAGCTTGTCCATCCCCAAACCTCTTTTCTTGTCACATGAATTAGCTACGGTTCTACTTTTTTTTAGGTAAAGCTGTGCCTTACTGCATTAACTAAGTAATTTGTTTGCACAGAGATAAATTAAATATTGCTGAAGGTAGAGTACACGTGGATTGAACATATTTTTAGCTTTGTAATTTTAAATGTATGATGTCCATTGTCTTGTTGCTTCATGTCTCTTTTAGTTGCATTTTTTTCCCCTTAATCAACATTCTGATTTCTTTGTTTGAGGTAACTTACCATAGTGATAGTATTTATTAAATATTTCAAAACTGTAAATATTCTGGTGGCTGATAGGTCCATCTCCGAGGCAGATCAATAAGATATTCTATCCTGGAATCAAGTCAGTTTCATCCactgaaataaataatgaaattat

Function

NR:

description
collagen alpha-2(V) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578900.2 True 6167 mRNA 0.52 53 10775267 10840532

Neighbor

gene id symbol gene type direction distance location
LOC110501376 LOC106581931 coding downstream 223770 10502550 ~ 10551497 (-)
calcrla LOC106581932 coding downstream 277090 10439675 ~ 10498177 (-)
vwa8 vwa8 coding downstream 539238 10142947 ~ 10236029 (-)
slc35a5 slc35a5 coding downstream 693468 10069543 ~ 10081799 (-)
LOC118943578 NA coding downstream 862924 9878934 ~ 9912343 (-)
LOC110501381 NA coding upstream 136741 10977273 ~ 10984214 (-)
igfbp5 igfbp5 coding upstream 198969 11039501 ~ 11054592 (-)
tns1b LOC100286503 coding upstream 646376 11486908 ~ 11791569 (-)
LOC110501383 LOC106581884 coding upstream 975718 11816250 ~ 11819211 (-)
fkbp7 fkbp7 coding upstream 999044 11839576 ~ 11844296 (-)
G1775003 NA non-coding downstream 84327 10667720 ~ 10690940 (-)
G1774927 NA non-coding downstream 166352 10583036 ~ 10608915 (-)
G1774889 NA non-coding downstream 273277 10501773 ~ 10501990 (-)
G1774843 NA non-coding downstream 339882 10434944 ~ 10435385 (-)
G1775227 NA non-coding upstream 36064 10876596 ~ 10876820 (-)
G1775228 NA non-coding upstream 36724 10877256 ~ 10877554 (-)
G1775229 NA non-coding upstream 37482 10878014 ~ 10878473 (-)
G1775246 NA non-coding upstream 61823 10902355 ~ 10902633 (-)
G1775250 NA non-coding upstream 64865 10905397 ~ 10905596 (-)
fundc1 fundc1 other downstream 1037411 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 1483292 9289279 ~ 9291975 (-)
G1774133 NA other downstream 1652018 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 1712066 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 2007220 8763292 ~ 8768047 (-)
G1777196 LOC100136012 other upstream 1000541 11841073 ~ 11843059 (-)
G1777286 NA other upstream 1200576 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 1427685 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 1780050 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 2328248 13168780 ~ 13172979 (-)

Expression


Co-expression Network