ofd1 (ofd1)


Basic Information

Item Value
gene id ofd1
gene name ofd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12013667 ~ 12025374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578925.2
GATAACGTTGAATTCAAAGCTGTGGGCACTTGGAGAGGACGCCGTTGGTCACTAAGCAGGTCATTTAAACCAGAATACGTTGAAATACGTGCCATAAACTCTAGCTATATACATGTTAGTCGCGTTACAGAGAATTTGGTACTTGTCTCCAGCAAGAAAAATCAGCTAGCAATTATTCGTTGATTGATCCTCTGTTCCCCAATTGAAGACAACATGTCTGTTGCCAAGGAGGAGGCTTTATCCCCAGATGAGCTGAGGAAGAGGCTTTACCAAACCTTTAAGAATCGAGGAGTGCTTGACACACTTAAAACGCAGCTTCGTAATCAGTTGATCCATGAATTGAAGCACCCCATCTTGAGTGGAGAAACTGTTCCCAGGCCAGTCCCTATGAAGTCAGACTCTGTCCTGGTCACCGCTTCTAACAGTCTGGTGGCAGATCATTTGAGGAACTCTGGGTATGAGTACACCCTGTCTGTGTTCTACCCTGAATGTGGCATGGGCAAAGATAAGATTTTAACTTCAAGGGACCTTCTTCAACTTATGAAAATCAGCCCGCGGTCACCACTTTACAAATCTCTGGCATCAAGTACACAGAAAGAGAATAAGGGTTTCCTGATGAGGCTCTTAATAGAATTAACAGACTGTCATCTGCATGGAGAACGGCGTGATGCTGATACTCAGACCACCAGTACGCCAGCTTATAGAGAATCTCTTGTTGACAAGATGAAAATGATCGATGAGGAGTATGAAGCTCTCCGCTACAAAGGGGACAAGTGGGTGTCCTATGAATCGAAGCTTGCTGCATATCGAACAGAAGTTGAAGCACAGGTTCAAGCCGAAATGAATGCAAAGCTGCAACATTATAAAGATGTGGAAATGTCCAAAGTGAAGATGGAGGAAAAAGACAAATCTCGCAAAGAGATTTTGCAGCTGAGGCAGGACATGGAGAGGACTTATGAGATGAAGTCGGGGGCATTGATCAATAGGGAGAAGAATGCCATCGATCGATTACAGAAACAACAAGAGATTGAGGAAAAAGACATCTATATGCAAAGACAAGCTGTGTTGAAAGAGATAGAAACCGTGCGGAATAGAGAAGCTGAGCTGAGGTTAAGGATGGAGGCTTTTGAAAAGACTTGCAAAATACAGGAAGACAAGACCAAGACCTTGGAGGAGCTGCTGAGAAGAAGAGAGCTTGCAGTGAAGACGACGGAGGACACCTATGACCAAAAGCTGAAGAATGAGCTTTCAAGATATCAGCTTGAGTTAAATGAAGAGTACACCAAAAGGACTGAAAAACTCACAGAGAATGAAAAAAGAAACACAGTGGAGACTATTCGTATGCAGAAGGAGTCGGCTGCAATCGATGCCAAGCTAGAGGAACACAGCAGAGCTTGTGCTGAGTTGAGACGATTGCAGATGGAGCTGGACACGTCCCAGTCTCAGTACTCTCTGCTAACACAGCAGAATGAGCTGCTGAGAGAGAGGCTGGAGACCATGAATGACTACCCCACCCTGAGGCGAGAGAGGGTGGAGCAGCAGGCCCAGCTCAGGCTGCTGATGAAACAGCTGGAGGAAGCTCAGGAGGAGAACCAGCGCCTACGGGCAGATCTGGGCAGGCCGTCGGTGGAGCAGCTGGCGCTGCAGACGGAGCTGAGGAGGCTGGAGAGTGCCAGGAGGCTGTCAGAGGAGGAGTTTGATAGCCACAGACAGGTGCTGCAGGCCCAGCTCCACAATGAGGTGGAGCGCTGTGCCCAGTTGAAGGCCCAGCTCATAGATTGTGAGGAGAGGACTCAGTGGATGACCACCCATGCAGAGGACATCAAGATGCAGCTCCGACAAACACAACTAGCTCTAGAGAACGAGGTCCTGCGTAACCCTAAGCCCTCCCTAGTGGACCGCTCAGTGCTGGAGCTCAATCCTGATAAACTAGTGCCCCCTGATATCTATGTGGACAGAGGTGTCCTGAGAGCCTGGGTGGCTGGTTATGATGACGTGTGTGAAGCAGGTGTGATGCCCTCTCAAGGGCGCAGGTCTCGCTGGGGGCGGAGCAGCTCCCCAGACTCTGACGCTGAGCTGGTGGCCGGGGCCAAGGCCAGGATCAGAGAGCTGGAGAAGGAGGCGGAGACACTGGAGGAAGCTTACAGGAACTACCAGCAGAGGGCGGTGCACGCCACTGTGTCTCACATGCTGCCCCCGCGATGCCTCTCACCCCAACGAGCACCGGTATCACCCCGCCCTCACTCAACTCAGAGGCAACATATCTCTCACCAACGCCCTCACTCGCCCCAAAGACAACAAGTCCCCCCCCAACCTTGCCCCCACTCACCCCAGCATCCACAAGTCTCCCACAGACCTCTCTCGCCTCAACAACAACCCCCTCCCCAGCGTACCAGAGCCCCCGCCTCTCCCCAACCCAGAGTGACCTTCGCTGAAGACCCGTCCCAGGATCAGTACCCTGGTCCAGGGAGCGGAAGGGACTTCCAGTCTCTGGACTTCAGTGAGGCCCGGTTTTCAGGAGACAGACACCCCCTGGAAGGCACCTCCTCTCCCCACAGGCGCCTGTCTTccacacccctctccctctccaggagcCAGCTTCACACAGAGCCTGTGGAAGAGGCTGAGGTATCGTCTGTGGCGTTTCCTGTGCTGTCTCCTGAGAGGcagctctcccccctccccctgccccTTGGAGAGGTAGCGTGCTCAGGGGACTTTACCTCAGATCTCTCCCCACCTCGCAGCCCTCAGCTCAGGAGCACTGCACGAGGCCAATGCAGTCCACCACAGGTACAGCAAATCATCTTCTCCAGTTCCGAGTCAGAGTCTTCCCCTCAGCCTGAGAAGATAACCATTGAAGATCTCACAGAGCCTTTGCCAGaGCCCAGCCACATTCCAGAGCTGCTCCTGGACACGGCGGGCAATGAGGAGGAGGCCCTTGACGGGCCCCTGACTGTCCCCCCGTCTCGGGCCCCTTGGGACCTCACAGAGGCTCAGCTGCGGGGGGAAGTTCAACAAACGCTGGATGAACCTGCCAgacaggaggaagaagaggagctgaggtgggagcgagagaggagagagagagaagaaaaacgACAGCGGGAAAAGGAGGAAGCCCAGGAGAAGGAGCTGAGAGAACTGGAGAGATTGGAGAAAGAAAGGCTATTGGAAGAAGTGCAGCAGTatggagaggaggtggggggagatgaagagaaggaggagagaagagggcagGAAGAACTGAAGGAGGCAGAAGAGCCTGAGGAGAAAGCCCCGTCCTCGGACAAAGATCCACTCCAGAAGTACCTGAAGATGATCATGGAGCAAAGACGGAGTCCGCATGTACAGaTCCCTGCTGGGAGAGAGGAGCCAgaacacaggagccccgaggccaaGAGTTTGTCTGATGAGAAAGATGATAGCGTTGCTTTCTCACATGAAGATGCAGATGAGTTCTGGTGAGGTGTCACAGAGTGTGAGTGTGAAAGGTACAATACCGCTGTACGTTTTACTTTGTTGTTTTTAGATGTTTAAGTTGTTTAAATGTCAGTCTTGGTTCATTGACACGAATAAACCTTCGATTTATAAATCACACA
>XM_036958733.1
GATAACGTTGAATTCAAAGCTGTGGGCACTTGGAGAGGACGCCGTTGGTCACTAAGCAGGTCATTTAAACCAGAATACGTTGAAATACGTGCCATAAACTCTAGCTATATACATGTTAGTCGCGTTACAGAGAATTTGGTACTTGTCTCCAGCAAGAAAAATCAGCTAGCAATTATTCGTTGATTGATCCTCTGTTCCCCAATTGAAGACAACATGTCTGTTGCCAAGGAGGAGGCTTTATCCCCAGATGAGCTGAGGAAGAGGCTTTACCAAACCTTTAAGAATCGAGGAGTGCTTGACACACTTAAAACGCAGCTTCGTAATCAGTTGATCCATGAATTGAAGCACCCCATCTTGAGTGGAGAAACTGTTCCCAGGCCAGTCCCTATGAAGTCAGACTCTGTCCTGGTCACCGCTTCTAACAGTCTGGTGGCAGATCATTTGAGGAACTCTGGGTATGAGTACACCCTGTCTGTGTTCTACCCTGAATGTGGCATGGGCAAAGATAAGATTTTAACTTCAAGGGACCTTCTTCAACTTATGAAAATCAGCCCGCGGTCACCACTTTACAAATCTCTGGCATCAAGTACACAGAAAGAGAATAAGGGTTTCCTGATGAGGCTCTTAATAGAATTAACAGACTGTCATCTGCATGGAGAACGGCGTGATGCTGATACTCAGACCACCAGTACGCCAGCTTATAGAGAATCTCTTGTTGACAAGATGAAAATGATCGATGAGGAGTATGAAGCTCTCCGCTACAAAGGGGACAAGTGGGTGTCCTATGAATCGAAGCTTGCTGCATATCGAACAGAAGTTGAAGCACAGGTTCAAGCCGAAATGAATGCAAAGCTGCAACATTATAAAGATGTGGAAATGTCCAAAGTGAAGATGGAGGAAAAAGACAAATCTCGCAAAGAGATTTTGCAGCTGAGGCAGGACATGGAGAGGACTTATGAGATGAAGTCGGGGGCATTGATCAATAGGGAGAAGAATGCCATCGATCGATTACAGAAACAACAAGAGATTGAGGAAAAAGACATCTATATGCAAAGACAAGCTGTGTTGAAAGAGATAGAAACCGTGCGGAATAGAGAAGCTGAGCTGAGGTTAAGGATGGAGGCTTTTGAAAAGACTTGCAAAATACAGGAAGACAAGACCAAGACCTTGGAGGAGCTGCTGAGAAGAAGAGAGCTTGCAGTGAAGACGACGGAGGACACCTATGACCAAAAGCTGAAGAATGAGCTTTCAAGATATCAGCTTGAGTTAAATGAAGAGTACACCAAAAGGACTGAAAAACTCACAGAGAATGAAAAAAGAAACACAGTGGAGACTATTCGTATGCAGAAGGAGTCGGCTGCAATCGATGCCAAGCTAGAGGAACACAGCAGAGCTTGTGCTGAGTTGAGACGATTGCAGATGGAGCTGGACACGTCCCAGTCTCAGTACTCTCTGCTAACACAGCAGAATGAGCTGCTGAGAGAGAGGCTGGAGACCATGAATGACTACCCCACCCTGAGGCGAGAGAGGGTGGAGCAGCAGGCCCAGCTCAGGCTGCTGATGAAACAGCTGGAGGAAGCTCAGGAGGAGAACCAGCGCCTACGGGCAGATCTGGGCAGGCCGTCGGTGGAGCAGCTGGCGCTGCAGACGGAGCTGAGGAGGCTGGAGAGTGCCAGGAGGCTGTCAGAGGAGGAGTTTGATAGCCACAGACAGGTGCTGCAGGCCCAGCTCCACAATGAGGTGGAGCGCTGTGCCCAGTTGAAGGCCCAGCTCATAGATTGTGAGGAGAGGACTCAGTGGATGACCACCCATGCAGAGGACATCAAGATGCAGCTCCGACAAACACAACTAGCTCTAGAGAACGAGGTCCTGCGTAACCCTAAGCCCTCCCTAGTGGACCGCTCAGTGCTGGAGCTCAATCCTGATAAACTAGTGCCCCCTGATATCTATGTGGACAGAGGTGTCCTGAGAGCCTGGGTGGCTGGTTATGATGACGTGTGTGAAGCAGGTGTGATGCCCTCTCAAGGGCGCAGGTCTCGCTGGGGGCGGAGCAGCTCCCCAGACTCTGACGCTGAGCTGGTGGCCGGGGCCAAGGCCAGGATCAGAGAGCTGGAGAAGGAGGCGGAGACACTGGAGGAAGCTTACAGGAACTACCAGCAGAGGGCGGTGCACGCCACTGTGTCTCACATGCTGCCCCCGCGATGCCTCTCACCCCAACGAGCACCGGTATCACCCCGCCCTCACTCAACTCAGAGACAACAAGTCCCCCCCCAACCTTGCCCCCACTCACCCCAGCATCCACAAGTCTCCCACAGACCTCTCTCGCCTCAACAACAACCCCCTCCCCAGCGTACCAGAGCCCCCGCCTCTCCCCAACCCAGAGTGACCTTCGCTGAAGACCCGTCCCAGGATCAGTACCCTGGTCCAGGGAGCGGAAGGGACTTCCAGTCTCTGGACTTCAGTGAGGCCCGGTTTTCAGGAGACAGACACCCCCTGGAAGGCACCTCCTCTCCCCACAGGCGCCTGTCTTccacacccctctccctctccaggagcCAGCTTCACACAGAGCCTGTGGAAGAGGCTGAGGTATCGTCTGTGGCGTTTCCTGTGCTGTCTCCTGAGAGGcagctctcccccctccccctgccccTTGGAGAGGTAGCGTGCTCAGGGGACTTTACCTCAGATCTCTCCCCACCTCGCAGCCCTCAGCTCAGGAGCACTGCACGAGGCCAATGCAGTCCACCACAGGTACAGCAAATCATCTTCTCCAGTTCCGAGTCAGAGTCTTCCCCTCAGCCTGAGAAGATAACCATTGAAGATCTCACAGAGCCTTTGCCAGaGCCCAGCCACATTCCAGAGCTGCTCCTGGACACGGCGGGCAATGAGGAGGAGGCCCTTGACGGGCCCCTGACTGTCCCCCCGTCTCGGGCCCCTTGGGACCTCACAGAGGCTCAGCTGCGGGGGGAAGTTCAACAAACGCTGGATGAACCTGCCAgacaggaggaagaagaggagctgaggtgggagcgagagaggagagagagagaagaaaaacgACAGCGGGAAAAGGAGGAAGCCCAGGAGAAGGAGCTGAGAGAACTGGAGAGATTGGAGAAAGAAAGGCTATTGGAAGAAGTGCAGCAGTatggagaggaggtggggggagatgaagagaaggaggagagaagagggcagGAAGAACTGAAGGAGGCAGAAGAGCCTGAGGAGAAAGCCCCGTCCTCGGACAAAGATCCACTCCAGAAGTACCTGAAGATGATCATGGAGCAAAGACGGAGTCCGCATGTACAGaTCCCTGCTGGGAGAGAGGAGCCAgaacacaggagccccgaggccaaGAGTTTGTCTGATGAGAAAGATGATAGCGTTGCTTTCTCACATGAAGATGCAGATGAGTTCTGGTGAGGTGTCACAGAGTGTGAGTGTGAAAGGTACAATACCGCTGTACGTTTTACTTTGTTGTTTTTAGATGTTTAAGTTGTTTAAATGTCAGTCTTGGTTCATTGACACGAATAAACCTTCGATTTATAAATCACACA

Function

symbol description
ofd1 Acts upstream of or within convergent extension involved in gastrulation; determination of heart left/right asymmetry; and epithelial cilium movement involved in determination of left/right asymmetry. Located in centrosome; ciliary basal body; and nucleus. Is expressed in Kupffer's vesicle; lateral line primordium; neuromast; and otic vesicle. Human ortholog(s) of this gene implicated in Joubert syndrome 10; Simpson-Golabi-Behmel syndrome type 2; orofaciodigital syndrome I; retinitis pigmentosa; and retinitis pigmentosa 23. Orthologous to human OFD1 (OFD1 centriole and centriolar satellite protein).

NR:

description
oral-facial-digital syndrome 1 protein

GO: NA

KEGG:

id description
K16480 OFD1; oral-facial-digital syndrome 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578925.2 False 3602 mRNA 0.52 22 12013667 12025374
XM_036958733.1 True 3563 mRNA 0.52 23 12013667 12025374

Neighbor

gene id symbol gene type direction distance location
nemp2 LOC106581926 coding downstream 139594 11863505 ~ 11874073 (-)
fkbp7 fkbp7 coding downstream 169371 11839576 ~ 11844296 (-)
LOC110501383 LOC106581884 coding downstream 194456 11816250 ~ 11819211 (-)
tns1b LOC100286503 coding downstream 222098 11486908 ~ 11791569 (-)
igfbp5 igfbp5 coding downstream 959075 11039501 ~ 11054592 (-)
LOC110501393 LOC106581920 coding upstream 5708 12031082 ~ 12034892 (-)
egfl6 egfl6 coding upstream 12456 12037830 ~ 12059560 (-)
LOC118936315 NA coding upstream 78690 12104064 ~ 12105954 (-)
LOC110501396 LOC106581917 coding upstream 78690 12104064 ~ 12112735 (-)
LOC110501397 LOC106581916 coding upstream 100077 12125451 ~ 12189402 (-)
G1777259 NA non-coding downstream 54296 11959165 ~ 11959371 (-)
G1777250 NA non-coding downstream 68634 11944812 ~ 11945033 (-)
G1777247 NA non-coding downstream 75630 11935950 ~ 11938037 (-)
G1777220 NA non-coding downstream 119043 11894328 ~ 11894624 (-)
G1777152 NA non-coding downstream 233953 11779496 ~ 11779714 (-)
G1777285 NA non-coding upstream 10930 12036304 ~ 12036629 (-)
G1777287 NA non-coding upstream 16362 12041736 ~ 12042023 (-)
G1777292 NA non-coding upstream 22468 12047842 ~ 12048077 (-)
G1777298 NA non-coding upstream 33112 12058486 ~ 12058927 (-)
G1777299 NA non-coding upstream 36273 12061647 ~ 12061853 (-)
G1777196 LOC100136012 other downstream 170608 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2275811 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 2721692 9289279 ~ 9291975 (-)
G1774133 NA other downstream 2890418 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 2950466 9044945 ~ 9063520 (-)
G1777286 NA other upstream 15734 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 242843 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 595208 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 1143406 13168780 ~ 13172979 (-)
G1778224 NA other upstream 1253906 13279280 ~ 13330495 (-)

Expression


Co-expression Network