LOC110501396 (LOC106581917)


Basic Information

Item Value
gene id LOC110501396
gene name LOC106581917
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12104064 ~ 12112735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958739.1
GGGAACCAATCAGCTTGCAGAACACATTTGACTCACTGTAGCTGCAAGGGGAATTTGAGCTGCTCTTCACTTGTGATTGAGTAGAGAAGAGTTGAGTCATTACATACGGAAACAAAGCGAtgcataaaaacatcctaataATAGACAGGCATTTGCTGTTTCATTAAACTTCCTTTTTTTTGCTTGCTGGAAGCTAAAATACTGACAACGACCAGGCACTACTTATTTGATAAGGTTTTCAAAGCTCACAAGGGATCAACAGTAAATAATATGGATGCTACCACCTGCTGGTTACAGTTGGCTCCATTGTTCCTATATCACTTCCTGGTACCTACCTCATGTCATTGGATGAGGCAGTTTCCATGTGACATTACGGTCAATACTACCAATACCACAAATGACATCATCTTTAATTGTGAGGAGCGTCGACTGAAAAATGTACCTGTTGGCATCCCCTGGAATGTGACCGTGCTGGACCTATCGGAAAACAACATCAGAAATGTATCTCTTGATGCATTTTCTAATCTGGAGAACCTGACCCTTCTCAATCTCAACTGTGTCAACAAAAATGGTGACACACACATCGCTGAAGGTGCCTTCAAAAATCTGACAAACCTGCAGGACCTAAGGCTTAATGGCAATGGCCTCATCAACATTCCTCAAATTCTCCCACTCATTCTGGACAAACTCATGCTGGACAATAACAAGATCAATTTCTCGAATATGAGCAACCTTGTCGGTATACAACATGTGAAGGAGCTGTACTTATCCAAAAATTGCTATTACTGGAATCCCTGTGAGACTAACTTTACCATTGGATATGGCACCTTCTCAGTATTGACTAAGTTGAAGGTTTTGATGTTGGCCTATAATAATTTAACTCGTGTTCCAAAAGGACTGCCAAGCTCTATACAAGAATTACACCTCGATTCGAACAAGATACAGCAAATTGCTGAGGATGATTTCCTTGGACTAACCCATCTAACAATCCTGGAATTACAGGGAAACTGTCCACGATGCTCCAATGCTCCATATCCTTGTGTTCCCTGTCCTAATGATTCTCTGGATATTCATCCTCATGCATTTCATGGTCTTACACAGTTACAGACACTGCACCTAGCAGGCAACTCACTTCGTTTCATCAATAACTCCTGGTTTGAGAGCTTGAACAATCTCACACATCTGTTCCTGTCTTATAATTACTTAACAAATACTATCACCAGTGGAACCTTTTTTAGCTATCTACCAAAGCTAGAAAAGATTGATTTGTCATTTAATTATGATTTGCTTGCCTACCCTGAAACCCTAGAGCTTTCAAAAAACTTTTCACAATTGGTGTCTCTTACAACGTTACATATAATGGGTTTTGTTTTCAGGGAAATTCATTTAGAAACACTCAGACCGCTTTATGAGCTCAAGCATCTTTCAGTGTTGAACATCGGAACTAACTTTATTGTTCGATCTGATTCCCACATATTCAACAAATTCTCAAACTCAAGTCTCAAAGTCATATATCTTGCGGAAAACAGGCTTTATCCAATTTCAGTGAATGAGTCCCCAGGTTGTGGCACAGGCGGCAACTTAAAGTCGGTGTTGTACACGTCGCCACTGACTGGATATTATTCCAATTCAAGGGACTTTTCTTATGGAATAAATCACAACCTTGTGAAGCCAGAATGCTTTATCTCTGGTCGAGTGCTGGTCCTTAGTTCAAATAATCTCTTTTTCATTTCTCCAAAGCAATTTGAGGGCTATGGTGACATTGCATGTCTAAACTTATCAAGAAATGGATTTTCAGCAGCATTGAACGGGACAGAGTTCACCTCATTACCAAACCTAAAATATCTGGACCTGTCCTTTAACAAGATTGACCTGGCCTATGACAACGCCTTCAAGGAATTAAAGAAACTCGAAATATTAGACCTAAGTTACAACAGCCACTATTTTGAAGTGTCTGGTGTGACACATAATTTAAATTTTTTGAAAAATCTACCGACTTTGAAAGTATTGAATATGTCACACAATAACATTTTTACATTAACCACTAAGCAGATGACAAGCACATCTTTAAAAGAGCTTCAATTTCAACACAATTTGTTGGCTACATTATGGAAAGAGGGGGATGACTCATACAACAGCCTTTTTAAAAAGCTGACGAATTTGACCTATCTGGATATTTCATTTAACAGCATTGAGAAGATCCCATCAAAAGTCTATGAAAACATACCATATACCCTTCAAAAACTATGTATTAGTCATAATTCACTCTGCCATTTTGATTGGGATAAACTGGCAGGTTTTCAACAACTGAATTTCCTGGATCTAAGCTACAATTCTTTATTTCATGTGTCAGCAAATCTCTCAAACTTCACAGACACACTTCAGATTCTTGACTTAAGCCACAATCAGATTTTTCAACTCTCTCGTGGATTTCTTAGGGGTGCTCAAAGCCTTCAGATACTTGACCTCAGCTACAACCAACTGACTATCATCAACGAGACCACCTTCCTATCGGGCCCTGAAAACTACATGAAAACCTTGTCCTTGGAAGGTAATCCATTCCAGTGTACCTGTGATTTACAAGAGTTCATCCAGTGGATAAAAGATAACAAAAACGTGGAGATCCCCAGACTGGCCAGTGAGGTGACCTGCAACATGCCAGCCAAAATGAGAGGCCAACCAATGATACTGTTTAACATTAAAGAATGCAACGAGGACAACATAGCCTTCCTGATTTACTCCCTCTCCACTTCCTTGATCATGTTCACTGTGGTCATCACTATGGCAGGGCATGTGTTTTATTGGGATGCCtcctatattctatactatttgAGGGCAAAGCTGAAGGGCTACCATTCGTTGAAGTCAACAACAACAGACAATCTCTATGATGCCTTTGTTACCTACGACACCAGAGACCCGTTGGTGTCAGACTGGGTACTGAACCAACTGCGGGTGCAgctggaagagaggggggagagacaccTGCCTCTCTGTCTGGAGGAACGAGACTGGGCCCCCGGGGTCCCCCTAATAGACAACCTCTTCCAGAGCATTCGACAGAGCCGCAAGACTGTCTTTGTGCTGACTGAGGCTTACATCAGGACTGGGAACTTCAGGATGGCTGTGTACCTGGCCCACCAGAGGTTGCTGGATGAGAACATAGATGTGATTGTGTTGGTTCTCCTGGAACCCGTGCTGCAGCACTCTCACTTCCTCCTTCTGCGGCGCCGTCTGTGTGGAAGGAGTGTTCTAGAGTGGCCCCAGTCTGCAGCCGCTGAGACCTGGTTCTGGCAGCACCTAAGGAACGCTGTCAGGTTAGACAACCAGGTGATGTACAACAAGATCTACTCCAGGTACTTCACCAGCAAGTAGAGCACAGTCCAGACCAGAGACTCAAGAGGAAAATATCTTTCTCACACAAATAGACTGAGCAGTTACACACACAAACTGCGATACCATTTACAAGCTCTGACTCTATCAGTTTTTCTATCTCTTGCACTGAATAATATGGATGATACTGTACATCTGAAATCAACAATATGTATATCAATGTGCTATTCCTTGTTCTAACACTATGGCCACTAGTAACTGTGCATTATAGTTGTGGTTCAGTTTTTCAGTTTTATGCTGTCTATGGGTAGTAGATAGTTCTATTCCTATTTGTTTTTGTCAATACATTCAAACTGCATGCCATTTGTAAGTAGATATCTGATTTTAAAAAGGATGACTTGGTGCAGTCTGTCTATGGGCATCCGTCTTTATATGATAACAGGAAGTGAACTAGTCTTAAGTTCCTGTTTCTTTAGGCTCAGATGAGGATGTGAATCTGAAGCCATGGTGCTAGCCTGTCAGTGGCacttctttctttatttctttataCTTAGAAAACTATAGGCTACAGTGATTCAACTGAACCGGTATTGTTGCAACACActattttattatattaatcaaaACATTGTTTAGGGAATCTCTTGTAAATGTGGACTATACATTGGACTACAGAGTCACAGCATCAAGGTCCCTTATGATAATTGAAAATGCATTATCTAAATGTAATCAATGACATAGAGATCTGTAAAATATTACAGTTGCATAGCCTCCAGACAGGTAGGCTTATGTTTCTAACGCAAACCAATAAACGCCTGTTACCACCTGATGTAATACTATGTAAATCCACAGGATGTCATCATTGAGACAATCAGTAAGAGTATCTCATGCGGTGACAGCGGACTGTTTTCTGTCGGCAGTGCAATGCTCTAATATCAAATCAGATAAAATGCAAGGTCCAATACGTTAAACAAATAAAACCATAACTTTTGTGTATGCTCTCTCGCTTGTAAATATTGATGTAATACGTATATATTCCAACCAAGATAAGCTCAAGAGTGAAGGAACGTGACGTCATGTTTACATTTGCATATCGCGGACTATAATAGACCTTGCTTGATTTACTCGCCTTCACTCGTTCTCTACGCAATCAGGATTGAGACACATCAGTAGCCAGTACAACTCCGATCCTCTGCAAGCATGTCTGACAAGCCAGATCTCGCTGAAGTCTCTAACTTTGACAAGACCAAGTTGAAGAAGACCGAGACACAAGAGAAAAACCCCTTGCCCACCAAAGAAACCATCGAACAGGAGAAGCAAGCGACAGCATGAAGCCCAAGCCTCTGCTATGCACTGTACATTCCACAAGCATTGCCTTTTTTCACCTCGTAGCTGTGTAACCCAAAACCTAAGTTGCATTGTGATTGGACAAAAGCAATGACTGTACAGCCCCTCCCTAGAacttattgttattttttttttttacatcaagtCTGAAAACAACTACTGACTGGCACTCTTTGACTAGGAGGATGTGTTGCGTGTCTCTAATCACTTCCAGCACCGTCACCTGTCCCTGCTGTGTCCCCTACTTCCAGCCACTTGTGGTTGTGAAGGGAAGTGCAAGGGTGTGATGGATCTGCCCAACCCGGGGGCCCACTTCTGACGTGTAATTCAGCTTCTGGCAACATGAAATGCTTTCAAATAAagcagtgttttgtttttcttgTTCAAATTCTTTTGTATAAATTGAGTTCTTGGAATGCAGAAGTTTGTTTTGATATGCAAATAAAGTTATAACTCTT

Function

NR:

description
toll-like receptor 8a2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958739.1 True 5138 mRNA 0.41 4 12104064 12112735

Neighbor

gene id symbol gene type direction distance location
egfl6 egfl6 coding downstream 44504 12037830 ~ 12059560 (-)
LOC110501393 LOC106581920 coding downstream 69172 12031082 ~ 12034892 (-)
ofd1 ofd1 coding downstream 78690 12013667 ~ 12025374 (-)
nemp2 LOC106581926 coding downstream 229991 11863505 ~ 11874073 (-)
fkbp7 fkbp7 coding downstream 259768 11839576 ~ 11844296 (-)
LOC110501397 LOC106581916 coding upstream 12716 12125451 ~ 12189402 (-)
LOC110501402 NA coding upstream 175094 12287829 ~ 12296285 (-)
LOC118943634 LOC106581874 coding upstream 256439 12369174 ~ 12375707 (-)
cnmd LOC106581911 coding upstream 309111 12421846 ~ 12426247 (-)
LOC110501405 LOC106581910 coding upstream 314835 12427570 ~ 12432961 (-)
G1777306 NA non-coding downstream 31700 12072028 ~ 12072364 (-)
G1777301 NA non-coding downstream 39439 12064116 ~ 12064625 (-)
G1777299 NA non-coding downstream 42211 12061647 ~ 12061853 (-)
G1777298 NA non-coding downstream 45137 12058486 ~ 12058927 (-)
G1777292 NA non-coding downstream 55987 12047842 ~ 12048077 (-)
G1777341 NA non-coding upstream 26153 12138888 ~ 12142265 (-)
G1777387 NA non-coding upstream 91157 12203892 ~ 12206243 (-)
G1777433 NA non-coding upstream 144569 12257304 ~ 12276350 (-)
G1777440 NA non-coding upstream 154782 12267517 ~ 12267896 (-)
G1777484 LOC106581913 non-coding upstream 231396 12344131 ~ 12345514 (-)
G1777286 NA other downstream 62442 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 261005 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2366208 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 2812089 9289279 ~ 9291975 (-)
G1774133 NA other downstream 2980815 9101752 ~ 9123249 (-)
G1777441 LOC106581914 other upstream 155482 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 507847 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 1056045 13168780 ~ 13172979 (-)
G1778224 NA other upstream 1166545 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 3454768 15567503 ~ 15568534 (-)

Expression


Co-expression Network