cnmd (LOC106581911)


Basic Information

Item Value
gene id cnmd
gene name LOC106581911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12421846 ~ 12426247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578952.2
CTGGACATTTCGACCAAAAGAATCCACACCGGTGGCCATACAGACGTGCGCCATCACCATACAGACGTGCGCCATCATGGGAGAGACTTCGGAGAAAGTCCCAATTGCAGAGGACTTTGAACAATGCCTACCACCTGCATACAGTACGTCGGCCACGAAGACCCCCGTTGCTGTTGGTCGACTCTTGAGATTTGGGGCTGCGGCTCTCATTGCCGGGGCAGTGCTGATGCTTTGCGGATCTATTGGAGCTTTCTACCTCTGGAAAGCCAGTGACAAAAATGTGTACAATGTACACTACAGTATGAGCATCAATGGAAAGGTGGAGGAGGGTTCCATGGAAATCGATTCCGATAATAATCTGGAAATGTTCCGAACTGGGAGTGGAAATGACGAGGCGTTGGAGATTCATGACTTTCACATTGGAATTACAGGAATCCGGTTCTCTGGAGGGGAGAAGTGTTATATTAAATCGCAAATCAAGGCCAACCTTCCAGAGGTGGAGACACTCAACAAGGAGTCATTGATGTTTGATCTGGAAGATGAGATCATGCCAGTGAAGTTTGATGAGGAGTCTCTGATGTGGGTGGCTGCTGACCAGCCCCTGAAGGACAGCAGCTTCCTCAGCACCAAGATCCTGGACCTCTGTGGAGACCTGCCCATCTTCTGGCTCCACCCCACCTATCCTAAAGatggagagaggagaaagagagacacccAGAGAGCCAAGCGTCAGTTTGACATGGAGGAGTTTGAGGCAGCTGCTGAGGAGAGGAACACAGTGAGCCGTGCAGAGAATAGCACCTCCAAGAGAGCCACAGAGGAGGAGGCGGAGGCCACGGGCTCAGCAGCCACCGGCTCTGCCTACAACCCAGAAAACCCCTACCATCGCAatcaggagggagaggagggcaccATGACCTTTGACCCAATGCTAGACCACCAGGGGATCTGCTGCTCAGAGTGCCGACGCAGCTACACCCACTGTCAGAGGATTTGCGAACCGTTGGGCGGCCACTGGCCTTGGCCCTACAACTACAGAGGCTGTCAGGTAGCTTGTCGAGTGATTCTGCCTTGCCGCTGGTGGGTGGCCCGCATATTAGGTATAGTGTAAGTAGGACACCCATTTTCTCAAGCCAAATATACCAATTATGCCAAATACACCAAACGTCTGAAAGGTCATGTTCTGTAAGCAATATTGTCATTTCTATGCAGATATTTATTTTGTAACTTTTAATTTGGTTGTAAATACCTGATCGCAGCAGGTGAGCGATGCTTGCTAGGATGAAACAGGGACCTCAGCCGCATGATTTAGTAAGAAAAGGCCAGGCAAGACACATTTCCACCTGGACCCTCGTGGCAACATTTAGCATATACAGCACGTACACCTTCTCTGCAGGCAACACTTGAAAAAACAAAAAAGGCCAAAACAAATGAAGCACAGCAGTAGCTTTTGATTTAGGGAATAAACATAACCTAATATCTGTCTTTTCTTTTCAACATATCTTTTCAGTAAACATACTATAGCCTACCAATGCTTTATTTGCACTACGCTGTCTTTGATGGAATGTATGGAAATGTATACAGTGATCATTATAAATGCTTAATAAAGATAATGTACAGTTTC
>XM_036958747.1
CTGGACATTTCGACCAAAAGAATCCACACCGGTGGCCATACAGACGTGCGCCATCACCATACAGACGTGCGCCATCATGGGAGAGACTTCGGAGAAAGTCCCAATTGCAGAGGACTTTGAACAATGCCTACCACCTGCATACAGTACGTCGGCCACGAAGACCCCCGTTGCTGTTGGTCGACTCTTGAGATTTGGGGCTGCGGCTCTCATTGCCGGGGCAGTGCTGATGCTTTGCGGATCTATTGGAGCTTTCTACCTCTGGAAAGCCAGTGACAAAAATGGAATTACAGGAATCCGGTTCTCTGGAGGGGAGAAGTGTTATATTAAATCGCAAATCAAGGCCAACCTTCCAGAGGTGGAGACACTCAACAAGGAGTCATTGATGTTTGATCTGGAAGATGAGATCATGCCAGTGAAGTTTGATGAGGAGTCTCTGATGTGGGTGGCTGCTGACCAGCCCCTGAAGGACAGCAGCTTCCTCAGCACCAAGATCCTGGACCTCTGTGGAGACCTGCCCATCTTCTGGCTCCACCCCACCTATCCTAAAGatggagagaggagaaagagagacacccAGAGAGCCAAGCGTCAGTTTGACATGGAGGAGTTTGAGGCAGCTGCTGAGGAGAGGAACACAGTGAGCCGTGCAGAGAATAGCACCTCCAAGAGAGCCACAGAGGAGGAGGCGGAGGCCACGGGCTCAGCAGCCACCGGCTCTGCCTACAACCCAGAAAACCCCTACCATCGCAatcaggagggagaggagggcaccATGACCTTTGACCCAATGCTAGACCACCAGGGGATCTGCTGCTCAGAGTGCCGACGCAGCTACACCCACTGTCAGAGGATTTGCGAACCGTTGGGCGGCCACTGGCCTTGGCCCTACAACTACAGAGGCTGTCAGGTAGCTTGTCGAGTGATTCTGCCTTGCCGCTGGTGGGTGGCCCGCATATTAGGTATAGTGTAAGTAGGACACCCATTTTCTCAAGCCAAATATACCAATTATGCCAAATACACCAAACGTCTGAAAGGTCATGTTCTGTAAGCAATATTGTCATTTCTATGCAGATATTTATTTTGTAACTTTTAATTTGGTTGTAAATACCTGATCGCAGCAGGTGAGCGATGCTTGCTAGGATGAAACAGGGACCTCAGCCGCATGATTTAGTAAGAAAAGGCCAGGCAAGACACATTTCCACCTGGACCCTCGTGGCAACATTTAGCATATACAGCACGTACACCTTCTCTGCAGGCAACACTTGAAAAAACAAAAAAGGCCAAAACAAATGAAGCACAGCAGTAGCTTTTGATTTAGGGAATAAACATAACCTAATATCTGTCTTTTCTTTTCAACATATCTTTTCAGTAAACATACTATAGCCTACCAATGCTTTATTTGCACTACGCTGTCTTTGATGGAATGTATGGAAATGTATACAGTGATCATTATAAATGCTTAATAAAGATAATGTACAGTTTC

Function

NR:

description
leukocyte cell-derived chemotaxin 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578952.2 False 1624 mRNA 0.48 7 12421846 12426247
XM_036958747.1 True 1483 mRNA 0.48 6 12421846 12426247

Neighbor

gene id symbol gene type direction distance location
LOC118943634 LOC106581874 coding downstream 46139 12369174 ~ 12375707 (-)
LOC110501402 NA coding downstream 125561 12287829 ~ 12296285 (-)
LOC110501397 LOC106581916 coding downstream 232444 12125451 ~ 12189402 (-)
LOC110501396 LOC106581917 coding downstream 309111 12104064 ~ 12112735 (-)
LOC118936315 NA coding downstream 315892 12104064 ~ 12105954 (-)
LOC110501405 LOC106581910 coding upstream 1323 12427570 ~ 12432961 (-)
LOC110501410 LOC106581903 coding upstream 181062 12607309 ~ 12620201 (-)
LOC110501411 LOC106581904 coding upstream 194335 12620582 ~ 12624860 (-)
LOC110501412 LOC106581902 coding upstream 201128 12627375 ~ 12636037 (-)
LOC110501414 LOC106581900 coding upstream 222094 12648341 ~ 12683975 (-)
G1777484 LOC106581913 non-coding downstream 76332 12344131 ~ 12345514 (-)
G1777433 NA non-coding downstream 145496 12257304 ~ 12276350 (-)
G1777440 NA non-coding downstream 153950 12267517 ~ 12267896 (-)
G1777387 NA non-coding downstream 215603 12203892 ~ 12206243 (-)
G1777341 NA non-coding downstream 279581 12138888 ~ 12142265 (-)
G1777548 NA non-coding upstream 22870 12449117 ~ 12449737 (-)
LOC110501413 LOC106581899 non-coding upstream 258260 12684208 ~ 12716652 (-)
G1777721 NA non-coding upstream 284448 12710695 ~ 12711897 (-)
G1777741 NA non-coding upstream 326285 12752532 ~ 12760661 (-)
G1777743 NA non-coding upstream 327339 12753586 ~ 12761087 (-)
G1777441 LOC106581914 other downstream 151732 12268217 ~ 12270114 (-)
G1777286 NA other downstream 380224 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 578787 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2683990 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 3129871 9289279 ~ 9291975 (-)
G1778140 efnb2 other upstream 742533 13168780 ~ 13172979 (-)
G1778224 NA other upstream 853033 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 3141256 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 3259609 15684423 ~ 15825221 (-)

Expression


Co-expression Network