LOC110501411 (LOC106581904)


Basic Information

Item Value
gene id LOC110501411
gene name LOC106581904
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12620582 ~ 12624860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578961.2
GCACCCTGCACCCGCCCAAGGCGGAGGAGCCAAAGAAAGCAAGGTAGTGGAACGGTGAGTTTTGTTAAGTGAAGGGTTAGTTGGCAGGATCATTTTATTAGTATTTTTCCCCGTTTTGAATCACATAGTGTAATGGATTTATACTATCCAgtctagttggtggcggtaatgtaCCTTTCGGTTGccaaccgccattaaaaaaaaaaaaacacaggaaaaaAAGAAAAGACGCCAATGATGTGTATGTACACGTCTTTGGTTTCCCCACGGAAAATAATAGAGGGAGCACCAAAATGGCGACTTCCTTACTTTGGCTAGGACGACTGGGGTCTCTCAAGGCTCTCCAGCGAGAGAGCTGGGTCCTTTTGAGGTGCCCCTCTGTGGCTGCATTCTGCACCAAGGTGGAGGAGCCAAAGAAAGCTGTTAAAAAGGCGAAGGCTGCAAAGGTGGCAGCGGCACCTCCAGCGCCAGCCCCCGAGTCTTTCGACAACAGTACTTACAAGAACCTCCAGCACCACAACTACAACCATTACACCTTCGCAGACCTGGACCTGGAGATGGCCAAGTATCGTCTGCCCCAGCCCTCCTCCGGCAGACCCTCCCCCAGACACTGAGATGGCCCAGCCTGCCTGGACACCAGGCCACATGACCCCAACCCCATATCCCCAGACACCATGTCTCTGATCCCACTGCCCAACATACCTGCCCCGGGTGTCTTAAGAATTATTTCCCCCTCTACTTTACGATCCCTAAGACGTGCTTGCAATTGTTATAGGAAATGTATGATATTAAACTATACGAAAGGGA
>TU2035584
taatgtaCCTTTCGGTTGccaaccgccattaaaaaaaaaaaaacacaggaaaaaAAGAAAAGACGCCAATGATGTGTATGTACACGTCTTTGGTTTCCCCACGGAAAATAATAGAGGGAGCACCAAAATGGCGACTTCCTTACTTTGGCTAGGACGACTGGGGTCTCTCAAGGCTCTCCAGCGAGAGAGCTGGGTCCTTTTGAGGTGCCCCTCTGTGGCTGCATTCTGCACCAAGGTGGAGGAGCCAAAGAAAGCTGTTAAAAAGGCGAAGGCTGCAAAGGTGGCAGCGGCACCTCCAGCGCCAGCCCCCGAGTCTTTCGACAACAGTACTTACAAGAACCTCCAGCACCACAACTACAACCATTACACCTTCGCAGACCTGGACCTGGAGATGGCCAAGTATCGTCTGCCCCAGCCCTCCTCCGGCAGACCCTCCCCCAGACACTGAGATGGCCCAGCCTGCCTGGACACCAGGCCACATGACCCCAACCCCATATCCCCAGACACCATGTCTCTGATCCCACTGCCCAACATACCTGCCCCGGGTGTCTTAAGAATTATTTCCCCCTCTACTTTACGATCCCTAAGACGTGCTTGCAATTGTTATAGGAAATGTATGATATTAAACTATACGAAAGGGA

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578961.2 False 807 mRNA 0.50 3 12620582 12624860
TU2035584 True 641 TUCP 0.51 3 12620582 12624694

Neighbor

gene id symbol gene type direction distance location
LOC110501410 LOC106581903 coding downstream 381 12607309 ~ 12620201 (-)
LOC110501405 LOC106581910 coding downstream 187621 12427570 ~ 12432961 (-)
cnmd LOC106581911 coding downstream 194335 12421846 ~ 12426247 (-)
LOC118943634 LOC106581874 coding downstream 244875 12369174 ~ 12375707 (-)
LOC110501402 NA coding downstream 324297 12287829 ~ 12296285 (-)
LOC110501412 LOC106581902 coding upstream 2515 12627375 ~ 12636037 (-)
LOC110501414 LOC106581900 coding upstream 23481 12648341 ~ 12683975 (-)
LOC110501413 LOC106581899 coding upstream 59348 12684208 ~ 12716652 (-)
LOC110501418 NA coding upstream 181847 12806707 ~ 12812450 (-)
ifngr2b LOC106581880 coding upstream 205178 12830038 ~ 12836513 (-)
G1777548 NA non-coding downstream 170845 12449117 ~ 12449737 (-)
G1777484 LOC106581913 non-coding downstream 275068 12344131 ~ 12345514 (-)
G1777433 NA non-coding downstream 344232 12257304 ~ 12276350 (-)
G1777440 NA non-coding downstream 352686 12267517 ~ 12267896 (-)
G1777387 NA non-coding downstream 414339 12203892 ~ 12206243 (-)
G1777721 NA non-coding upstream 85835 12710695 ~ 12711897 (-)
G1777741 NA non-coding upstream 127672 12752532 ~ 12760661 (-)
G1777743 NA non-coding upstream 128726 12753586 ~ 12761087 (-)
G1777742 NA non-coding upstream 128908 12753768 ~ 12754430 (-)
G1777441 LOC106581914 other downstream 350468 12268217 ~ 12270114 (-)
G1777286 NA other downstream 578960 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 777523 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2882726 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 3328607 9289279 ~ 9291975 (-)
G1778140 efnb2 other upstream 543920 13168780 ~ 13172979 (-)
G1778224 NA other upstream 654420 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 2942643 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 3060996 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 4432262 17057104 ~ 17063550 (-)

Expression


Co-expression Network