LOC110501413 (LOC106581899)


Basic Information

Item Value
gene id LOC110501413
gene name LOC106581899
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12684208 ~ 12716652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958755.1
AGAACACTTCTGAGGGGTTATTCCAGAAGGTTCTTGGCCATGTCTCCCAGGCCTAGTGTTGAGCTCACAGGGTTCTTCTGGCCAGAGGTGAGCTGCAGTTCTGTGTGTTGGTCATCATTGCTGTGAGATCTACCTATCTGTTGACCCCTGACCCCGCAGTGCCCGTTATCACCCAATCATCATGGCCCCAGTGCCACCTGGCATCCGCTTTTTGGCCTCCTTCAACAGAGACCAGTGGTACCGAGCCTTCACATTTAGCCTCACCTTCCTGCTGTACACCAGCTTCCACCTGTCCAGAAAACCCATCAGCATCGTCAAGAGTGAGCTGCATAAGAACTGCTCAGCTCTCAATGAGCTCTCCACAGCCAGTAGTAACCAGCTGCCAAACCTCCACACAGCTGCAGAGTGCAGCTGGAAACCCTTCGATAAAAGCAACTATAAGCAGCTGCTGGGAGCCATGGACTACTCCTTCCTCTGTGCCTATGCTGTGGGCATGTTCCTCAGTGGCATCATCGGTGAGCGCCTGCCCATCCGTCTGTACCTGACGTTTGGCATGCTGATGAGCGGCCTCTTCACCTGTCTGTTTGGCCTGGGCTACATTTACAGCATCCACAGCCTTGGCTTCTATATATTTGTCCAGGTGGCTAATGGCTTGGTTCAGACGACTGGCTGGCCCAGTGTTGTCACATGCATCGGGAACTGGTTTGGCAAGGGAAGGAGGGGTCTGATCATGGGCATATGGAACTCCCACACCTCGGTGGGCAACATCTTGGGCTCTCTGATCGCAGGCTACTGGGTCTCCTCCAACTGGGGCTTGTCCTTCATCGTTCCCGGCCTCATCATTGCTGCCATGGGAATCATCTGCTTCCTCTTCCTCATTGAACATCCAAATGATCTTAGAAGCATCCATGCTGTACAGAACCCTGCTCCCTGCAGGAACAATCAAAAGCTGACAAAGAACTGGAATGGGACGAATGGACACAAGCAACTGTACCATTCATACAAACAGGGAGACAAATATGAGaaCTGGGACACAGAGCTGCTGCTCCCTCAGGACAACAGTAGTGTTTCTGTCCCAGTAcagcaggtggtggtggtgaagagCGAATCAGAGCCCTCGGCCATCAGCTTCATGGGAGCTCTACGCATTCCGggaGTGATAGAGTTCTCGCTCTGTTTGCTGTTTGCCAAGCTGGTCAGCTACACCTTCCTCTTCTGGCTGCCGCTCTACATCACGAAAACGGCTCACCTAGATGCCAAGAAGGCCGGAGATCTCTCCACTCTGTTTGACGTGGGAGGAATTGTGGggGGAATATTGGCTGGGGTCATATCTGATAAGCTGGGAAAGAGAGCCACCACCTGTGCAGTGATGCTGCTGCTGGCTGCTCCTATACTTTATGGCTTCTCCATGATCAGCGAGTTTGGACTGGGACCGACCATAGGTATGCTACTGGTGTGTGGAGGACTTGTGAATGGGCCATATGCCCTAATTACAACAGCAGTGGCTGCTGATCTGGGAACACACAAGAGCCTCAAGGGCAATGCCAGAGCCCTTTCTACTGTCACGGCCATCATTGACGGCACAGGATCAGTAGGTGCAGCAATAGGCCCCCTTCTGGCAGGAGTGTTGTCGTCACAGGGCTGGGATCAGGTCTTTTACATGCTGATGGCAGCTGACTTCCTAGCACTGCTGCTGTTGCTGCGGCTGGTGATGAAGGAGCTGACCTCTGGTAACGTGGTTAAACCTCGTTCTGGCAGCACCACTGTAGAGATGAAGGAGCACTAAGCACTTTGCACTAACTCCAGACCGAGAAGTGAAAAGACTGTGGCCCTCGCTCAGCACAGACACACTGCATCCTATACCACTACCCTGGACCGGACCTTTTAACTGAGATGACCTGAACCCACCCTGCCTGTGGTCACCTCTCAACCTTAACCCAATCCCTATAAACCAGGGCCCAGTTATCTGGATTTTAAGTCAATGATTTGTCTGTTCAATGAATATGCCTTTAATACTATCTGATAGTTTTTGAAACACTGAGCCCAAGACAATAGACAATGTTCACAAAGAGACATAGACAGGCAACACTTCTTTCTAAAGGTCTGTTGTCACTGCGAGCTTGGCTGTATCGCCGTCGATTCAGCAGTAGCTGACATGAACTAGTGTGTAGCAGCACCTATTGGAACCGAATGAAAGTCAATGAAGATGGAAGTAGCGGAGTAGAATAAGCAACCAACCAAGCCATCCAGTCCCTCTGAGCACATACCActttttatttagatttttttatatacatcTAGAGCATATTGGGCCCACTTCAGCCTTATGTAACCAAAGATTGTGGGGAAATGCACAGTAATttatatggagaaaaaaaaaaaacattctggtGGTCTATGTATTTTCTCTGTTTAGGAAGTATATGAAGGTACTGATATTTTGTGTTCCTATATGATCAGCAAATTATGGTACAGTTTGTTATGTTTTGGGACTTGAATGCTATGAATGTAACATTTTGTGTTTGAGTATGGAATTCTGCATATCAACTCCCGAGGAGGATCAACCATTTCTCAAATCAGTTATTTATGCAGTGCAATGTTAAACTGTGATAGTAAAAATAACAATGTGTAGAAAACACCAAATGCCATCATCCCAAACCTTAAAATGCTCACATTCATTCTGCCTTTGTGAACATTTTAAAGACGTTCCTGTGACTAATGCTTCCTACCTCCGAGTTTAAAGTGCCAAATGAGTGAAGAAAGGTAGCCTATGTACCTTCATGAAAAAGTAATCTATATTCTTATGAACTTTCATTCTGGCAGATGTGGTTAATTCCAATTCACCGGCCGTATttaactgaattgaaatggaagggACCCCATCCAGTAACGTGTCATTGTTCTTTGTGGCGATAGAGTATTTCTTGGTGGAAGCTGAATCATTATCGCAGTGCTTAAATGGTAGTACTTGAAATACTGTGTACCTTTTTTTTTGGTGTTTGTTCATTGGTCAGGCACTTGCTTTGTTCAGTTACTTGTCTGATTCTTACCTGACTCATAAGTACACGGTCTTGGTGACAATTGTCCATTTCTGAAGATATCTTGGTAGATAAATAAAAAGCGAGTGGCTGTGTTGCTGAATTCTCTGGAAGCTTCTTCACAAAAGATCTGTCTTGGTTTCTAAGCATAATGTTGAATTGTTTTGTTCACCAGGCTAAGTGTGTTCCAGTTAGGCTGAGTGGTCTCAAGTCTCCCAGCTGGAGGTGGCAGGTGGCAAACAAAATGTACACTTCTGAAAGCTAGTCCTCCACTCAGTgacacaggcaggcacacacaggcaATCTCTCTTTGTTTCTGAAAAGTACTGCAGGCCAAATCAAATATGAATTATTA
>XM_036958756.1
GGAGAACACTTCTGAGGGGTTATTCCAGAAGGTTCTTGGCCATGTCTCCCAGGCCTAGTGTTGAGCTCACAGGGTTCTTCTGGCCAGAGGTACCGAGCCTTCACATTTAGCCTCACCTTCCTGCTGTACACCAGCTTCCACCTGTCCAGAAAACCCATCAGCATCGTCAAGAGTGAGCTGCATAAGAACTGCTCAGCTCTCAATGAGCTCTCCACAGCCAGTAGTAACCAGCTGCCAAACCTCCACACAGCTGCAGAGTGCAGCTGGAAACCCTTCGATAAAAGCAACTATAAGCAGCTGCTGGGAGCCATGGACTACTCCTTCCTCTGTGCCTATGCTGTGGGCATGTTCCTCAGTGGCATCATCGGTGAGCGCCTGCCCATCCGTCTGTACCTGACGTTTGGCATGCTGATGAGCGGCCTCTTCACCTGTCTGTTTGGCCTGGGCTACATTTACAGCATCCACAGCCTTGGCTTCTATATATTTGTCCAGGTGGCTAATGGCTTGGTTCAGACGACTGGCTGGCCCAGTGTTGTCACATGCATCGGGAACTGGTTTGGCAAGGGAAGGAGGGGTCTGATCATGGGCATATGGAACTCCCACACCTCGGTGGGCAACATCTTGGGCTCTCTGATCGCAGGCTACTGGGTCTCCTCCAACTGGGGCTTGTCCTTCATCGTTCCCGGCCTCATCATTGCTGCCATGGGAATCATCTGCTTCCTCTTCCTCATTGAACATCCAAATGATCTTAGAAGCATCCATGCTGTACAGAACCCTGCTCCCTGCAGGAACAATCAAAAGCTGACAAAGAACTGGAATGGGACGAATGGACACAAGCAACTGTACCATTCATACAAACAGGGAGACAAATATGAGaaCTGGGACACAGAGCTGCTGCTCCCTCAGGACAACAGTAGTGTTTCTGTCCCAGTAcagcaggtggtggtggtgaagagCGAATCAGAGCCCTCGGCCATCAGCTTCATGGGAGCTCTACGCATTCCGggaGTGATAGAGTTCTCGCTCTGTTTGCTGTTTGCCAAGCTGGTCAGCTACACCTTCCTCTTCTGGCTGCCGCTCTACATCACGAAAACGGCTCACCTAGATGCCAAGAAGGCCGGAGATCTCTCCACTCTGTTTGACGTGGGAGGAATTGTGGggGGAATATTGGCTGGGGTCATATCTGATAAGCTGGGAAAGAGAGCCACCACCTGTGCAGTGATGCTGCTGCTGGCTGCTCCTATACTTTATGGCTTCTCCATGATCAGCGAGTTTGGACTGGGACCGACCATAGGTATGCTACTGGTGTGTGGAGGACTTGTGAATGGGCCATATGCCCTAATTACAACAGCAGTGGCTGCTGATCTGGGAACACACAAGAGCCTCAAGGGCAATGCCAGAGCCCTTTCTACTGTCACGGCCATCATTGACGGCACAGGATCAGTAGGTGCAGCAATAGGCCCCCTTCTGGCAGGAGTGTTGTCGTCACAGGGCTGGGATCAGGTCTTTTACATGCTGATGGCAGCTGACTTCCTAGCACTGCTGCTGTTGCTGCGGCTGGTGATGAAGGAGCTGACCTCTGGTAACGTGGTTAAACCTCGTTCTGGCAGCACCACTGTAGAGATGAAGGAGCACTAAGCACTTTGCACTAACTCCAGACCGAGAAGTGAAAAGACTGTGGCCCTCGCTCAGCACAGACACACTGCATCCTATACCACTACCCTGGACCGGACCTTTTAACTGAGATGACCTGAACCCACCCTGCCTGTGGTCACCTCTCAACCTTAACCCAATCCCTATAAACCAGGGCCCAGTTATCTGGATTTTAAGTCAATGATTTGTCTGTTCAATGAATATGCCTTTAATACTATCTGATAGTTTTTGAAACACTGAGCCCAAGACAATAGACAATGTTCACAAAGAGACATAGACAGGCAACACTTCTTTCTAAAGGTCTGTTGTCACTGCGAGCTTGGCTGTATCGCCGTCGATTCAGCAGTAGCTGACATGAACTAGTGTGTAGCAGCACCTATTGGAACCGAATGAAAGTCAATGAAGATGGAAGTAGCGGAGTAGAATAAGCAACCAACCAAGCCATCCAGTCCCTCTGAGCACATACCActttttatttagatttttttatatacatcTAGAGCATATTGGGCCCACTTCAGCCTTATGTAACCAAAGATTGTGGGGAAATGCACAGTAATttatatggagaaaaaaaaaaaacattctggtGGTCTATGTATTTTCTCTGTTTAGGAAGTATATGAAGGTACTGATATTTTGTGTTCCTATATGATCAGCAAATTATGGTACAGTTTGTTATGTTTTGGGACTTGAATGCTATGAATGTAACATTTTGTGTTTGAGTATGGAATTCTGCATATCAACTCCCGAGGAGGATCAACCATTTCTCAAATCAGTTATTTATGCAGTGCAATGTTAAACTGTGATAGTAAAAATAACAATGTGTAGAAAACACCAAATGCCATCATCCCAAACCTTAAAATGCTCACATTCATTCTGCCTTTGTGAACATTTTAAAGACGTTCCTGTGACTAATGCTTCCTACCTCCGAGTTTAAAGTGCCAAATGAGTGAAGAAAGGTAGCCTATGTACCTTCATGAAAAAGTAATCTATATTCTTATGAACTTTCATTCTGGCAGATGTGGTTAATTCCAATTCACCGGCCGTATttaactgaattgaaatggaagggACCCCATCCAGTAACGTGTCATTGTTCTTTGTGGCGATAGAGTATTTCTTGGTGGAAGCTGAATCATTATCGCAGTGCTTAAATGGTAGTACTTGAAATACTGTGTACCTTTTTTTTTGGTGTTTGTTCATTGGTCAGGCACTTGCTTTGTTCAGTTACTTGTCTGATTCTTACCTGACTCATAAGTACACGGTCTTGGTGACAATTGTCCATTTCTGAAGATATCTTGGTAGATAAATAAAAAGCGAGTGGCTGTGTTGCTGAATTCTCTGGAAGCTTCTTCACAAAAGATCTGTCTTGGTTTCTAAGCATAATGTTGAATTGTTTTGTTCACCAGGCTAAGTGTGTTCCAGTTAGGCTGAGTGGTCTCAAGTCTCCCAGCTGGAGGTGGCAGGTGGCAAACAAAATGTACACTTCTGAAAGCTAGTCCTCCACTCAGTgacacaggcaggcacacacaggcaATCTCTCTTTGTTTCTGAAAAGTACTGCAGGCCAAATCAAATATGAATTATTA
>TU2035652
GTAGCTGTTGCTGCGGCTGGTGATGAAGGAGCTGACCTCTGGTAACGTGGTTAAACCTCGTTCTGGCAGCACCACTGTAGAGATGAAGGAGCACTAAGCACTTTGCACTAACTCCAGACCGAGAAGTGAAAAGACTGTGGCCCTCGCTCAGCACAGACACACTGCATCCTATACCACTACCCTGGACCGGACCTTTTAACTGAGATGACCTGAACCCACCCTGCCTGTGGTCACCTCTCAACCTTAACCCAATCCCTATAAACCAGGGCCCAGTTATCTGGATTTTAAGTCAATGATTTGTCTGTTCAATGAATATGCCTTTAATACTATCTGATAGTTTTTGAAACACTGAGCCCAAGACAATAGACAATGTTCACAAAGAGACATAGACAGGCAACACTTCTTTCTAAAGGTCTGTTGTCACTGCGAGCTTGGCTGTATCGCCGTCGATTCAGCAGTAGCTGACATGAACTAGTGTGTAGCAGCACCTATTGGAACCGAATGAAAGTCAATGAAGATGGAAGTAGCGGAGTAGAATAAGCAACCAACCAAGCCATCCAGTCCCTCTGAGCACATACCActttttatttagatttttttatatacatcTAGAGCATATTGGGCCCACTTCAGCCTTATGTAACCAAAGATTGTGGGGAAATGCACAGTAATttatatggagaaaaaaaaaaaacattctggtGGTCTATGTATTTTCTCTGTTTAGGAAGTATATGAAGGTACTGATATTTTGTGTTCCTATATGATCAGCAAATTATGGTACAGTTTGTTATGTTTTGGGACTTGAATGCTATGAATGTAACATTTTGTGTTTGAGTATGGAATTCTGCATATCAACTCCCGAGGAGGATCAACCATTTCTCAAATCAGTTATTTATGCAGTGCAATGTTAAACTGTGATAGTAAAAATAACAATGTGTAGAAAACACCAAATGCCATCATCCCAAACCTTAAAATGCTCACATTCATTCTGCCTTTGTGAACATTTTAAAGACGTTCCTGTGACTAATGCTTCCTACCTCCGAGTTTAAAGTGCCAAATGAGTGAAGAAAGGTAGCCTATGTACCTTCATGAAAAAGTAATCTATATTCTTATGAACTTTCATTCTGGCAGATGTGGTTAATTCCAATTCACCGGCCGTATttaactgaattgaaatggaagggACCCCATCCAGTAACGTGTCATTGTTCTTTGTGGCGATAGAGTATTTCTTGGTGGAAGCTGAATCATTATCGCAGTGCTTAAATGGTAGTACTTGAAATACTGTGTACCTTTTTTTTTGGTGTTTGTTCATTGGTCAGGCACTTGCTTTGTTCAGTTACTTGTCTGATTCTTACCTGACTCATAAGTACACGGTCTTGGTGACAATTGTCCATTTCTG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958755.1 False 3393 mRNA 0.47 19 12684208 12716650
XM_036958756.1 False 3245 mRNA 0.47 19 12684208 12716652
TU2035652 True 1405 lncRNA 0.40 2 12684507 12687011

Neighbor

gene id symbol gene type direction distance location
LOC110501414 LOC106581900 coding downstream 233 12648341 ~ 12683975 (-)
LOC110501412 LOC106581902 coding downstream 48171 12627375 ~ 12636037 (-)
LOC110501411 LOC106581904 coding downstream 59348 12620582 ~ 12624860 (-)
LOC110501410 LOC106581903 coding downstream 64007 12607309 ~ 12620201 (-)
LOC110501405 LOC106581910 coding downstream 251247 12427570 ~ 12432961 (-)
LOC110501418 NA coding upstream 90055 12806707 ~ 12812450 (-)
ifngr2b LOC106581880 coding upstream 113386 12830038 ~ 12836513 (-)
LOC110501422 LOC106581896 coding upstream 138978 12855630 ~ 12867235 (-)
crfb5 LOC106581895 coding upstream 151867 12868519 ~ 12887935 (-)
LOC110501423 LOC106581741 coding upstream 185323 12901975 ~ 12912654 (-)
G1777548 NA non-coding downstream 234471 12449117 ~ 12449737 (-)
G1777484 LOC106581913 non-coding downstream 338694 12344131 ~ 12345514 (-)
G1777433 NA non-coding downstream 407858 12257304 ~ 12276350 (-)
G1777440 NA non-coding downstream 416312 12267517 ~ 12267896 (-)
G1777387 NA non-coding downstream 477965 12203892 ~ 12206243 (-)
G1777741 NA non-coding upstream 35880 12752532 ~ 12760661 (-)
G1777743 NA non-coding upstream 36934 12753586 ~ 12761087 (-)
G1777742 NA non-coding upstream 37116 12753768 ~ 12754430 (-)
G1777781 NA non-coding upstream 71478 12788130 ~ 12788617 (-)
G1777441 LOC106581914 other downstream 414094 12268217 ~ 12270114 (-)
G1777286 NA other downstream 642586 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 841149 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2946352 9635535 ~ 9737896 (-)
G1778140 efnb2 other upstream 452128 13168780 ~ 13172979 (-)
G1778224 NA other upstream 562628 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 2850851 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 2969204 15684423 ~ 15825221 (-)
LOC110501514 dapl1 other upstream 4340470 17057104 ~ 17063550 (-)
G1777721 NA non-coding upstream 23684 12710695 ~ 12711897 (-)

Expression


Co-expression Network