LOC110501791 (LOC106582296)


Basic Information

Item Value
gene id LOC110501791
gene name LOC106582296
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34585700 ~ 34592688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579617.2
CACAGATGCTTCACCCTCCCGGAAGTGCGTGGCTCAACGAGAAAATGGTGGACCACAGCTGCAGTGGATTTCATTCGCCCGTGTTGTGGATTTTTTCTGTTACATTTGTAGTCAAAATGTGTTTGATGGTTCTCGGGTTGAGAGCTGTTGATGCTGAGGGTCAAATTGAAGATGCATTCCGTGCAGGAAATACAGTATTTTCACCGACCACTGCAGCAGCACGGGATCTACGGTATCTTCTCTACGATGTCAACCCACCAGAGGGCTTCAACCTGCGTCGGGATGTCTACATCCGCATGGCATCCCTGGTGAAGACCCTGAGGAGACACGGTGACTGGGTGCTGGTGCTGCCCCCCTGGGGGCGTCTCTACCACTGGCAGAGCCCAGACATCCACCAGACAAGAATCCTCTGGGGAGAGTTCTTCAGCCTCACCAGCCTTCAGGGCAATGTGCCAGTCATAGAATACGAGGAGTTTATAGCCGAGTCTGGAGGTCCATTTATTGAACAAGTGCTGGTGCTACAGAACTACGCTGAAGGGTGGACGGATGGAAAATGGGAGGAGAAAGTGGATGAGAGACCCTGCGTTGAGCGGTTAATGTACTCCAAAGACAAACAGGGCTATTACAGaGGTTGGTTCTGGGGCTATGAGGAAACCAGGTGTGTGAACGTCACTTGTCTTTCAGCTCAGGGCCACGCCTCCATGCTGGCACCCCTCCTGCAGAACAACATCACATCAACGTCAGTGATGTTGGATAGAGCAGAGACTGTCCTCCATGATCACTACGCTGGAAAGGACTACTGGAATACTCGCCGCAGCATGGTCTTCGCCAAACACCTGCGTCTCCTAGGGGACGAGTTCCGAGCAAAGTACCTGAACTCCACAGACGAGCAGGACCAGACCGTATACAACGAGGACTGGACTCTCATTAAGAATAAGCTGGGTTCTGCCAGAGGGGGGCCATACCTGGGTGTCCACCTGAGAAGGAAGGACTTTATCTGGGGTCACAGAGAGGATGTGCCCAGCCTCAAAGGAGCTGTGAAGAAGATCATGAGCCTCATGAAGAAAACCAAACTAGACAGAGTCTTTGTGGCCACAGATGCAGATGATGAAGAGCTGGCAGAGCTGAAGATGATGTTACCAGAGATGACACGCTTTGAGCCCACCTGGGACGACCTGGAACTACTCAAAGACGGGGGCGTGGCTATCATCGACCAATGGATCTGCGCACATGCCAGGTATTTTATCGGAACATCCGTGTCGACCTTCTCCTTCCGTATccacgaggagagagagatattgggattTGAACCCAAAACCACCTACAACCGCTTCTGTGGGGACAGTGAGAAAGAGTGTGAACAGCCCACACACTGGAAAATAGTCTACTGACTCATCAATGCAAAACCCCACTCAAGACCTCTTTAAAACATGCCAAAAGCAGTGTTGAAGTTGACagttttttcattattttatatATACGCTACCgttaagtttggggtcacttagaaatgtccttgtttttaaaagagaaccttattttttttgtccatttaaaatgacatcaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579617.2 True 1567 mRNA 0.50 9 34585700 34592688

Neighbor

gene id symbol gene type direction distance location
bard1 bard1 coding downstream 41468 34473620 ~ 34544232 (-)
LOC110502093 LOC106582292 coding downstream 602198 33951053 ~ 33983502 (-)
LOC110501786 LOC106586446 coding downstream 657768 33687182 ~ 33927932 (-)
LOC118936582 erbb4 coding downstream 953522 33497664 ~ 33632178 (-)
LOC110502092 erbb4 coding downstream 1075932 33401748 ~ 33509768 (-)
LOC110502094 LOC106582301 coding upstream 545642 35138330 ~ 35471205 (-)
LOC110501794 ralb coding upstream 1104898 35697586 ~ 35738804 (-)
tfcp2l1 tf2l1 coding upstream 1500500 36093188 ~ 36102895 (-)
LOC110502096 LOC106582358 coding upstream 1513359 36106047 ~ 36228129 (-)
nifk mk67i coding upstream 1635673 36228361 ~ 36232090 (-)
G1803329 NA non-coding downstream 1670 34583565 ~ 34584030 (-)
G1803350 NA non-coding downstream 15826 34569622 ~ 34569874 (-)
G1803089 NA non-coding downstream 130673 34454807 ~ 34455027 (-)
G1803079 NA non-coding downstream 139033 34446334 ~ 34446667 (-)
G1803052 NA non-coding downstream 163018 34422467 ~ 34422682 (-)
G1803393 NA non-coding upstream 47284 34639972 ~ 34657362 (-)
G1803395 NA non-coding upstream 51950 34644638 ~ 34651986 (-)
G1803399 NA non-coding upstream 77151 34669839 ~ 34671292 (-)
G1803400 NA non-coding upstream 78681 34671369 ~ 34672336 (-)
G1803441 LOC106582299 non-coding upstream 167227 34759915 ~ 34768728 (-)
G1801331 NA other downstream 1625215 32958322 ~ 32960485 (-)
G1801352 NA other downstream 1632030 32950467 ~ 32953670 (-)
G1801071 NA other downstream 1807923 32759858 ~ 32777777 (-)
G1801195 NA other downstream 1881377 32703800 ~ 32704323 (-)
G1803964 NA other upstream 533791 35126479 ~ 35126833 (-)
G1805927 LOC106582360 other upstream 1465156 36057844 ~ 36059768 (-)
LOC110501806 sema5b other upstream 1985060 36552698 ~ 36837583 (-)
G1806393 NA other upstream 2342970 36935658 ~ 36936087 (-)

Expression


Co-expression Network