LOC110501827 (LOC106582332)


Basic Information

Item Value
gene id LOC110501827
gene name LOC106582332
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37769660 ~ 37770890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579666.2
ATGACTTGTATCTTACCAggcttttctctttctctctctctcttccagatCGTATTCTTTGAGGATAAGAATTTCCAAGGTCGTAGTTATGAGTGCAACAGCGACTGCCCAGACCTGCACTCCTACTTCAGCCGCTGTAACTCCATCAGGGTGGAGAGCGGCTGCTGGGTGCTGTACGAGCGCCCCAACTACGGAGGCTACCAGTACGTGCTGACCCCTGGAGAGTACCCTGACCACCAGCAGTGGATGGGCTTCAATGACAACATCAGGTCCTGTCGCTCTATTAAAAATGTCTATGAAAATTCCTACAAGATCAGGTTCTATGACAGGCCAGATTTAGCTGGCCAGATGGCAGAGTGGAGCGAAGACTGCCCATCGGTCCACGAAGCCTTCAAGTTCTGTGAATTCCACTCTGCTGTAGTGATGGATGGTGCCTGGGTCTTCTATGAGCTGCCCAACTACAGGGGTCAGCAGTACTTCCTGGAGCACGGAGAGTACCGTAACTTCACAGACTGGGGCGCTACCTCCCCTGTCGTGGGCTCATTCCGCAGGATCACAGAGTTCTAGAACCTTAAGACCCCTAGTGTTTTAGTTCTAGAGCCCTACGACAACATC

Function

NR:

description
gamma-crystallin M2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579666.2 True 615 mRNA 0.52 2 37769660 37770890

Neighbor

gene id symbol gene type direction distance location
LOC110501826 NA coding downstream 4433 37762840 ~ 37765227 (-)
LOC110502101 LOC106582334 coding downstream 46193 37576415 ~ 37723467 (-)
LOC110501819 LOC106582336 coding downstream 209858 37545726 ~ 37575934 (-)
LOC110501818 LOC106582337 coding downstream 241034 37432933 ~ 37528626 (-)
LOC110501817 LOC106582339 coding downstream 358150 37399070 ~ 37411510 (-)
LOC118943607 LOC106582311 coding upstream 8381 37779271 ~ 37779640 (-)
LOC110501821 LOC106582326 coding upstream 28089 37798979 ~ 37800091 (-)
LOC110502127 LOC106582319 coding upstream 59652 37830542 ~ 37831485 (-)
LOC110502140 LOC106582322 coding upstream 63163 37834053 ~ 37835172 (-)
LOC110502128 LOC106582310 coding upstream 68111 37839001 ~ 37840676 (-)
G1807018 NA non-coding downstream 10525 37758858 ~ 37759135 (-)
G1806717 NA non-coding downstream 230161 37539300 ~ 37539499 (-)
G1806708 NA non-coding downstream 239976 37529365 ~ 37529684 (-)
G1807030 NA non-coding upstream 3318 37774208 ~ 37774524 (-)
G1807074 NA non-coding upstream 77143 37848033 ~ 37848768 (-)
G1807075 NA non-coding upstream 79211 37850101 ~ 37850374 (-)
LOC110501831 LOC106582318 non-coding upstream 81040 37851828 ~ 37860908 (-)
G1807587 LOC100380630 non-coding upstream 94074 37864964 ~ 37866937 (-)
G1807020 LOC105030512 other downstream 9412 37759971 ~ 37760248 (-)
G1806449 NA other downstream 657186 37043561 ~ 37112474 (-)
G1806393 NA other downstream 833573 36935658 ~ 36936087 (-)
LOC110501806 sema5b other downstream 1190949 36552698 ~ 36837583 (-)
G1805927 LOC106582360 other downstream 1709892 36057844 ~ 36059768 (-)
G1807750 LOC106582372 other upstream 422532 38193422 ~ 38195096 (-)
G1807731 NA other upstream 437900 38208790 ~ 38241273 (-)
LOC110502145 LOC106586333 other upstream 804976 38520872 ~ 38726596 (-)
G1808299 NA other upstream 1173246 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2965758 40736648 ~ 40813437 (-)

Expression


Co-expression Network