LOC110501831 (LOC106582318)


Basic Information

Item Value
gene id LOC110501831
gene name LOC106582318
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37851828 ~ 37860908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579670.2
CATCTTGAAAGGCCTCCAATGCAAAACTTTGGATCCCTTGGAAAGGACTGTGCATCTCTCCTCTGATGAAAGGGCTGTGGACCGCTGCCCTAATGAAAGGGCTGTGGATCTCTCCTCTGATGAAAGGGCTGTGgacctctgttctgatgaaaggGCTGTGGATCTCTCCTCTGATGAAAGGGCTGTggatctctgttctgatgaaaggGCTGTGgacctctgttctgatgaaaggGCTGTGGATCTCTCCTCTGATGAAAGGGCTGTggatctctgttctgatgaaaggGATGTGgacctctgttctgatgaaaggGCTGTGgacctctgttctgatgaaaggGCTGTGgacctctgttctgatgaaaggGATGTGgacctctgttctgatgaaaggGCTGTGgacctctgttctgatgaaaggGCTGTGgacctctgttctgatgaaagaCATGTGGACCTCTGTTCTAATGAAAGGGATGTggacctctgctctgatgaaaggGATGTggacctctgctctgatgaaaggGATATgggcctctgctctgatgaaaggGCTGTGgacctctgttctgatgaaaggGATGTGGACCTCTGTTCCAATGAAAGGGATGTggacctctgctctgatgaaaggGATGTggacctctgctctgatgaaaggGATGTggacctctgctctgatgaacgGGATGTGgacctctgttctgatgaaaatGTAAGTCGTCTTTCAGCAttaagggaaagggaaagggggatacctagtccgttgtacaactgaatgccttcacctgaaatgtgtcttccgcatttaacccaactcctctgaatcagagaggtgcaggggtctacttaatcgacatccacgtctggTTATTGACAATTTTAAGAACTCACCTTTATTATTATCTTACAGAAAGCATGAATAAGATGGAGCAGCCAGTGGACAATACTTTGAAATCATCCCAAAAGAGAACATCCCAATAGTTCAGTAGCCTAAACGATGAGTGGTCAAGGATTTATTTCAACACTGGACTTGACTCTATCCCAGCAGTCTTGCCCTCCATTGTCTCCACAACTAATAATCTACAGCCCTCTGGTGCTGATAACGTTTTGGATCATCCAAACAGCTTAAAGATGGAGACCACATTGGAGAAGCTGAGAAGACCACCATCAACAATGACACAGAGATGGAGATTGCTACTGGGGACAACACTGCTGAAATCGTCACAGTGGAGACAAAGCCCAAGAAAACTGATAGGCCGAAAGAGCTGAAGACAAAAATCCCTTGTCTATTAGCAAAGGTTGGAAATAAGGACGGTGGCCGGGTTGGTGAGAATCTAGAGGTGAAGATGCGACGTCTTCCACAACGCCAcgacacatggacaaccctacaGTGGAGAATGTAGAACACAGAGAAGAGGGTGTCATGAAGaactcagccagagagacagaaccACTTGCTGTCTGCAGAAGGACTCATGTCTCCTCACACATCACCAAACAAAGAAAACCCACCAGAGAATCCCATAAAACAACACAAAAACGTTACAAAAAACTTTTAACCCAAGAACAACTTTTGTAGTCCCTCTCCAATCCAAATCCCATCGTAGTGTCTCACCTGACCCATTTCATGATTACCTTTTCGATTATCCTGAAGCTCAGAACTCTGTATTTAAATTAGACAGGGCAAACCCATTGGTCGTAGATGCCGCAGGGCACTAAAACTAAAGCTAAAGGTCACAAAAACTAAAGCTAAAGGTCGAAAGACTTTTGTGATATCACATATTGTGATTTCAAATGAGCCCACATCTAGAAAGGGCAAGAAAACATTCAGAGAAAGCAGTAAGACTAAAGCACAGCCTGTCATGGTGGACCATGAATTGCATATTGAGGCAGAAGATGATGCATTCATTCTGTCTCGGTCTATCATGGAAGAGGAGTCTCATTCTACTAAAGGGTGCACAGCCTATGTAGACATGGATGGCACACTGCCTGAATCCGGGGACACATCCTGCTCTTCCAGTGCTGCGAGACAGTCCACATCCCAGAGCAGTAAGAGACCTACCACAGTGAAGTGGACGTTTGTAGTCTCGGTGAACAGGGACACATCCTGCTCTTCCAGTGCTGCGAGACAGTCCACAGCCTGGAGCAGTAAGAGACCTACCACAGTGAATGGGACGTTTGTAGTCTCGGTGAACAGGGACACATCCTGCTCTTCCAGTGCTGCGAGACAGTCCACATCCCAGAGCAGTAAGAGACCTACCACAGTGAAGTGGACGTTTGTAGTCTCGGTGAACAGGGACACATCCTGCTCTTCCAGTGCTGCGAGACAGTCCACAGCCCGGAGCAGTAAGAGACCTACCACAGTGAATGGGACGTTTGTAGTCTCGGTGAACAGGGACAGCTCCTCCGCGAATAGTACAATATTAGACAATGCattcaaagctgggaccgagagattgaaagacatcagactgttaaatagccatcagtagccggctaccaccctattactcaaccctgcaccttataggctgctgccctatttacatagacatggaatcactggtcacttaaataatggaacactagtcacttgaataatgtttaaatactgcTTTTCTCATTTACTcatgtatacagtatactgtattctattttacTGTGTTTTAGTCAATGGCTCTccaacattgctcatcctaatatttatatatttttaaccccATTCTTTTACgttagagttgtgtgtattgttgtgaattgccagatattactgcactgttggagctaggaacacaaggatttagctacacccgcaataacatttgctaaatatgtgtatgtgaccaataacattgtattttatttgatgcTTGGGCAGAAAAGCAGAAGTGCACTCCTAGTACAGTGTATGACTTTGTCACTGAAGAACAAACAAATGGTCAGGGATGAAAGCATAGTGGAGCATCTCACAGACCCAGATCACTGTCTAGCAGCTGGGCGCAAGACTACAGACTCGTTGTTCAAGAAACTCAGGCCTCTAAACATGCATGGTTGGCAACCCAGGAAACCTGCAGAATATTCTGAGGATCCTAAAAGGCTTGTGTGTTGAGGAGTAAACGCCCCCATTGGACTCAGGTGACCCCACTACAGTTGCTGCGGAGCAAAAGACCAAGAAAGCCAGGAAAGAGCAGAGTGCCAAATCAAAGAAGAAGAATGGAAAGAAGGAGGACTCCGGTTCCCCTGTGAAGCAGAGGAAAAAGAGAATGAAAAGTAGCAACACTAAGTGGTCGCTGTCTCAGGGTGGAGGTTATTCTTTGTCCAGTGAGGCTATGGAGAGCCAGGGTAGTACATATGGAGCTTTGTCCAGTGAGGCTATGGAGAGCCAGGGTAGTACATATGGAGCTTTTGCAACACAAAATGCAGAAGTGTAGCCGGTGGCGGAGCCCAACGTGTTGCAAGTCGTCACACACTCTGCCACTGAGGACAGCAGTGGAGCTTATGAAAGTATGTCTACATTTTGAAGCCCTCAGTCCAGACTTCAAAGGCAGCAGCTTTAAGCACCAGTCCAACCAGGGCCATAAAACCATAAGCAGAGACACTTTTGTGATGCCTACTAGTTTTAATGAATCCAGCAGAAATGGCAAGGCCTAAGTTTTTCCTGATTCCAAGATGATTGTGTCAAACAATTGATTTATCAGCCCCTTTTATTATATTAATGAAGGAATGAATACTTCAATAAGCCAACATGTAGATGTATAGTTTGATAATGTTTTTTAATGACTTGGGTCAATTAGCTATTGCATGGGTGTTCAACTCATCCTTAGATGACAGACTGTACCATCCAGCTAATTCACTGTATGGCTGTGTCATATTATGGTTAAGTGATGACCAATGCACCTCTCCTTTTGTTTCTAACATAATCTGGACCCGTGATGTTGGAGTTACTGACTGGAGTAGGCTGTTCAGCTGAGAGGATCGTGGTTTTATGTCTGCTCCCCTCTGCCTCTACTGTACACAGCCTttctacagacagTGGAGTGGGTAGCCCAGGGTATAATGTGCAGTACCCCAACCTTCTTGAAAGAGAAGCAATGATCCTCTCTTCCTTCGCTGGGATGATCCTGAATAGCTTGCCTGTAGAAGACATTCTAGCTCTCTACAGCACCAAACCATCTGCCGCTTACCTCCACCAGCATTCCAAGAGCAACATCGTTCATCCCTTTACCTTGTCCTACCACCTGTTTGCAATGCTGGGCTCGTTCAAGGCCGCGGACCACACCAGGAAGCATaCCCAGAAGGTGAAGTGGTGGCTGTCTGTGCAGGGTAACGGAGGTGCTGCCCCTGCTGTACAGAGGGCCTTGGTGCAGTCCTCTTCCTCATCCACATCTAACACCTTCCTCAGTGTCAGTGGTGAGTCCTTAAAGGAACAAACAGGGCATTATGAAGGATAACAAGAATCTCTACATGATTAAGGAAATTCCTATCCTGCGTTATTATACTGTTATTACAGGGTATCAGTCCTCCAGTATGTTTATCATATCACTAGTGGTTTCCTCTAAGTATCATTCTAGTGTGTTATCATATCACTAGAGGTTTCCTCTTAGTATCAACCCTCCAGTGTGTTTATCATATCACTAGTGGTTTCCTCTAAGTATCACTCTAGTGTGTTATCATATCACTAGCGGTTTCCTCTAAGTATCAACCCCCCAGTGTGTTTATCATATCACTAGTGGTTTCCTCTATATCTGGGTTTACCCATCTGTAAGGAATCAAATGTTTCACTACACCATATACATTACTGTACAATTAATGTACACTCTGTAACAAATAAATATGTATTGCCTATGTG
>TU2067466
agggatcatagctttcacctgCCCAGAAGGTGAAGTGGTGGCTGTCTGTGCAGGGTAACGGAGGTGCTGCCCCTGCTGTACAGAGGGCCTTGGTGCAGTCCTCTTCCTCATCCACATCTAACACCTTCCTCAGTGTCAGTGGTGAGTCCTTAAAGGAACAAACAGGGCATTATGAAGGATAACAAGAATCTCTACATGATTAAGGAAATTCCTATCCTGCGTTATTATACTGTTATTACAGGGTATCAGTCCTCCAGTATGTTTATCATATCACTAGTGGTTTCCTCTAAGTATCATTCTAGTGTGTTATCATATCACTAGAGGTTTCCTCTTAGTATCAACCCTCCAGTGTGTTTATCATATCACTAGTGGTTTCCTCTAAGTATCACTCTAGTGTGTTATCATATCACTAGCGGTTTCCTCTAAGTATCAACCCCCCAGTGTGTTTATCATATCACTAGTGGTTTCCTCTATATCT

Function

NR:

description
uncharacterized protein C2orf80 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579670.2 False 4858 mRNA 0.45 6 37851828 37860908
TU2067466 True 478 lncRNA 0.43 3 37851930 37853632

Neighbor

gene id symbol gene type direction distance location
LOC110502128 LOC106582310 coding downstream 11152 37839001 ~ 37840676 (-)
LOC110502140 LOC106582322 coding downstream 16656 37834053 ~ 37835172 (-)
LOC110502127 LOC106582319 coding downstream 20343 37830542 ~ 37831485 (-)
LOC110501821 LOC106582326 coding downstream 51737 37798979 ~ 37800091 (-)
LOC118943607 LOC106582311 coding downstream 72188 37779271 ~ 37779640 (-)
LOC110502141 LOC106582316 coding upstream 42240 37903148 ~ 37967285 (-)
LOC110501835 LOC106586372 coding upstream 111304 37972212 ~ 37995938 (-)
LOC110501838 LOC100136430 coding upstream 143921 38004829 ~ 38012137 (-)
LOC110501839 rftn2 coding upstream 168594 38029502 ~ 38063991 (-)
LOC110502144 LOC106586344 coding upstream 443560 38304468 ~ 38383049 (-)
G1807075 NA non-coding downstream 1454 37850101 ~ 37850374 (-)
G1807074 NA non-coding downstream 3060 37848033 ~ 37848768 (-)
G1807030 NA non-coding downstream 77304 37774208 ~ 37774524 (-)
G1807018 NA non-coding downstream 92693 37758858 ~ 37759135 (-)
LOC110502101 LOC106582334 non-coding downstream 270463 37576415 ~ 37723467 (-)
G1807587 LOC100380630 non-coding upstream 4056 37864964 ~ 37866937 (-)
G1807588 NA non-coding upstream 11859 37872767 ~ 37873860 (-)
G1807607 NA non-coding upstream 66929 37927837 ~ 37928265 (-)
G1807673 NA non-coding upstream 209958 38070866 ~ 38072483 (-)
G1807754 NA non-coding upstream 341093 38202001 ~ 38202385 (-)
G1807020 LOC105030512 other downstream 91580 37759971 ~ 37760248 (-)
G1806449 NA other downstream 739354 37043561 ~ 37112474 (-)
G1806393 NA other downstream 915741 36935658 ~ 36936087 (-)
LOC110501806 sema5b other downstream 1273117 36552698 ~ 36837583 (-)
G1805927 LOC106582360 other downstream 1792060 36057844 ~ 36059768 (-)
G1807750 LOC106582372 other upstream 332514 38193422 ~ 38195096 (-)
G1807731 NA other upstream 347882 38208790 ~ 38241273 (-)
LOC110502145 LOC106586333 other upstream 714958 38520872 ~ 38726596 (-)
G1808299 NA other upstream 1083228 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2875740 40736648 ~ 40813437 (-)

Expression


Co-expression Network