LOC110501838 (LOC100136430)


Basic Information

Item Value
gene id LOC110501838
gene name LOC100136430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38004829 ~ 38012137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959263.1
GACAGTCAAGTAGCCATGCTCGTTTGGAATGAGATGCTGCGTCTACCCACGGTGATGAGACAGATGAGGCCAGTCTGCAGGGCCCTGGCCCCCCACCTCACCCGAGCCTACGCCAAGGACGTCAAGTTTGGAGCCGATGCTCGGGCCATGATGCTGAAGGGAGTGGATCTGCTGGCTGATGCTGTCGCCGTCACCATGGGTCCCAAGGGTCGCACAGTAATCATCGAGCAGAGCTGGGGCAGCCCCAAGGTGACCAAGGACGGCGTCACTGTAGCCAAGGCCATCGACCTGAAGTGCAAGTACCAGAACATCGGTGCCAAGCTGGTCCAGGACGTGGCCAACAACACAAACGAGGAAGCAGGAGATGGCACCACTACCGCCACCGTGCTGGCCAGGGCCATCGCCAAGGAGGGCTTTGACACCATTAGTAAAGGCGCTAACCCTGTGGAGATCCGCCGTGGCGTCATGCTGGCTGTGGAGACCGTCATTGCTGAACTGAAGAGGATGTCTAAGCCAGTCACCACACCTGAGGAGATTGCCCAGGTGGCCACCATCTCTGCTAATGGAGACGTGGAGATCGGCACCATCATCTCCAACGCCATGAAAAAAGTGGGCCGCAAGGGAGTCATCACTGTCAAGGATGGCAAAACTCTGCATGATGAGCTTGAGATCATTGAGGGGCTGAAGTTTGACCGCGGATACATCTCACCTTACTTCATCAACACAGCCAAAGGCCAGAAGTGTGAGTTTCAGGATGCCTATGTGTTGCTGAGTGAGAAGAAGATCTCCACTGTCCAGAGCATCGTCCCTGCCCTGGAATTGGCCAACCAGAACCGGAAACCTCTGGTCATCGTGGCTGAGGATGTGGACGGAGAGGCCCTCAGCACCCTGGTTCTCAACAGGCTGAAGGTGGGACTACAAGTGGTGGCAGTCAAGGCCCCAGGCTTTGGAGACAACAGGAAGGCCCAGCTGCACGACATGGCCGTGGCCACCGGGGGCACTGTGTTTGGTGATGAGGCGGTGGGCATTGCTCTGGAGGACATCCAGGCACATGACTTTGGCCAGGTGGGCGAGGTGTCAGTGACCAAGGACGACACCATGCTGCTGAAGGGGAAGGGAGACGCGGCATCCATCGAGAAGAGGCAGGCTCAGATCGCTGAGCAGCTGGAGAACACCACCAGCGATTACGAGAAGGAGAAGCTCAACGAAAGGCTGGCCAAGCTGTCTGACGGAGTGGCTGTGCTCAAGGTGGGAGGAACGAGTGATGTGGAGGTGAATGAGAAGAAGGACCGTGTGACCGACGCCCTGAATGCCACCAGGGCCGCTGTGGAGGAGGGCATCGTGCCCGGGGGTGGCTGTGCCCTGCTGCGCTCAATCCCTGCCCTGGATGCCCTCGTGCCCATCAACTCTGACCAGAAGATTGGAATTGACATCATCAGACGAGCCCTGCGTGTGCCAGCCATGACAATTGCTAAGAACGCTGGTGTGGAGGGCTCTCTAGTGGTAGAGAAGATCCTTCAGGCCGCGGTGGAGATTGGCTACGATGCCATGGAAGGAGAGTACGTCAACATGGTAGAGAAGGGCATCATTGACCCCACCAAGGTGGTGAGGACTGCACTAATGGATGCTGCAGGTGTCGCATCCCTTCTCTCCACTGCTGAGTGTGTGGTCACAGAGCTGcccaaggaggagaaggagggtggCATGCCAGGAGGTATGGGCGGCATGGGAGGTATGGGAGGTATGGGCGGTGGCATGTTCTGAGGCCCACCTCAAAGCGCTGTAAAAACTTAATGGCAGTGTGGGGCTAGGGGGCAAATTGTCCCTCCAAcccccagacttgccaaaactgaaTGGCCGTGAGTTTTGTTGGAGCTGCAAATGGATGAACCACACTACTTCTGCTGATtgtctcccctccaccctctggaAGAACAGACTAGCCTGTCCTCGCTCagcctctctccgtccctctacCCGACCAGCCTGTCCTCGCTcagcctctctccatccctctacctctttaACTGAGGCTCTGAGACCCCAGTCTGCCCCGATGATCCCCCCCCCCTTATTAACTGAGGCTGTGAGACCCCCTCCATTTACCTCACAAACATGGCCGTCTCATCATCCATCAGCAACATGCAGAATATTCACTGTTTATGAAAGATGCTAACCAGTGCGAATAATGCAATGCTGGTATTGATAAATTGTCATTTCTATCAAATGGAAGTAATGAAGCCTGTAACTTCCTGACGTTAAAGACGAGGCTGATTTGAATAAATGGTTAAACACAGGATAGCTGTAGCTAGAAGGGGGTTTGCTGGAGAAAGGAAACTTGGCCAGGCATGCCACTGTCAATTTTTGTCGTAACCTTTTGTTAGTTTTAGCTTTGTCCTGTTTCACCCAAGTAATGTTGGGAGGAACCGTAACCTTTTCAGTTGAgttaatgaaaataaaataattgcGGCGCATGAGCATTCCTTTACTTTGTCTGATTTCAATACTCAAATATTCTAGAACTTTGGAACCAAAAGATTCATATCAGAATTCTATAGGATGGTTATTGTGCATTAAGATAGCTGAATGTCTTTCTAGCAGAGGTGGACTGGAGGTTGGTCGGACTAGTTACAGCAGTTTGGGCCAGTGAAGGTCCAAGCCACAAGTTAATGTGAAACCCATTGATGTCCTCATGACCGGATTTGTACTTACTGCTCATAGATGTTTAGCCTACGTTTACTGTGTGTTCAATCAGTACTATAAACAACCGTGCATTCAAGAAGTGTTGAGCTGTGTTCCTCCTCCCCCCAGTACATTATTTCTTTGCAAATAACCAATTGtgatcatttgacatgttttgtacaatgtagacattaatttgtttttatttaataaaaCCAAATGTTCTGAACAA
>XM_036959264.1
TGCAAAAAGCCATGTGCAGTGCTGTCTCTGAAGTTCGATTCACCACACCTCTGGTCGTTCTTCTCAACTCTATAACGTTAATCACTCAGTTTCCTCCAGACGACCAAATCGTGCCAGCCTAAAATCTTTCAAACGACAAAGATGCTGCGTCTACCCACGGTGATGAGACAGATGAGGCCAGTCTGCAGGGCCCTGGCCCCCCACCTCACCCGAGCCTACGCCAAGGACGTCAAGTTTGGAGCCGATGCTCGGGCCATGATGCTGAAGGGAGTGGATCTGCTGGCTGATGCTGTCGCCGTCACCATGGGTCCCAAGGGTCGCACAGTAATCATCGAGCAGAGCTGGGGCAGCCCCAAGGTGACCAAGGACGGCGTCACTGTAGCCAAGGCCATCGACCTGAAGTGCAAGTACCAGAACATCGGTGCCAAGCTGGTCCAGGACGTGGCCAACAACACAAACGAGGAAGCAGGAGATGGCACCACTACCGCCACCGTGCTGGCCAGGGCCATCGCCAAGGAGGGCTTTGACACCATTAGTAAAGGCGCTAACCCTGTGGAGATCCGCCGTGGCGTCATGCTGGCTGTGGAGACCGTCATTGCTGAACTGAAGAGGATGTCTAAGCCAGTCACCACACCTGAGGAGATTGCCCAGGTGGCCACCATCTCTGCTAATGGAGACGTGGAGATCGGCACCATCATCTCCAACGCCATGAAAAAAGTGGGCCGCAAGGGAGTCATCACTGTCAAGGATGGCAAAACTCTGCATGATGAGCTTGAGATCATTGAGGGGCTGAAGTTTGACCGCGGATACATCTCACCTTACTTCATCAACACAGCCAAAGGCCAGAAGTGTGAGTTTCAGGATGCCTATGTGTTGCTGAGTGAGAAGAAGATCTCCACTGTCCAGAGCATCGTCCCTGCCCTGGAATTGGCCAACCAGAACCGGAAACCTCTGGTCATCGTGGCTGAGGATGTGGACGGAGAGGCCCTCAGCACCCTGGTTCTCAACAGGCTGAAGGTGGGACTACAAGTGGTGGCAGTCAAGGCCCCAGGCTTTGGAGACAACAGGAAGGCCCAGCTGCACGACATGGCCGTGGCCACCGGGGGCACTGTGTTTGGTGATGAGGCGGTGGGCATTGCTCTGGAGGACATCCAGGCACATGACTTTGGCCAGGTGGGCGAGGTGTCAGTGACCAAGGACGACACCATGCTGCTGAAGGGGAAGGGAGACGCGGCATCCATCGAGAAGAGGCAGGCTCAGATCGCTGAGCAGCTGGAGAACACCACCAGCGATTACGAGAAGGAGAAGCTCAACGAAAGGCTGGCCAAGCTGTCTGACGGAGTGGCTGTGCTCAAGGTGGGAGGAACGAGTGATGTGGAGGTGAATGAGAAGAAGGACCGTGTGACCGACGCCCTGAATGCCACCAGGGCCGCTGTGGAGGAGGGCATCGTGCCCGGGGGTGGCTGTGCCCTGCTGCGCTCAATCCCTGCCCTGGATGCCCTCGTGCCCATCAACTCTGACCAGAAGATTGGAATTGACATCATCAGACGAGCCCTGCGTGTGCCAGCCATGACAATTGCTAAGAACGCTGGTGTGGAGGGCTCTCTAGTGGTAGAGAAGATCCTTCAGGCCGCGGTGGAGATTGGCTACGATGCCATGGAAGGAGAGTACGTCAACATGGTAGAGAAGGGCATCATTGACCCCACCAAGGTGGTGAGGACTGCACTAATGGATGCTGCAGGTGTCGCATCCCTTCTCTCCACTGCTGAGTGTGTGGTCACAGAGCTGcccaaggaggagaaggagggtggCATGCCAGGAGGTATGGGCGGCATGGGAGGTATGGGAGGTATGGGCGGTGGCATGTTCTGAGGCCCACCTCAAAGCGCTGTAAAAACTTAATGGCAGTGTGGGGCTAGGGGGCAAATTGTCCCTCCAAcccccagacttgccaaaactgaaTGGCCGTGAGTTTTGTTGGAGCTGCAAATGGATGAACCACACTACTTCTGCTGATtgtctcccctccaccctctggaAGAACAGACTAGCCTGTCCTCGCTCagcctctctccgtccctctacCCGACCAGCCTGTCCTCGCTcagcctctctccatccctctacctctttaACTGAGGCTCTGAGACCCCAGTCTGCCCCGATGATCCCCCCCCCCTTATTAACTGAGGCTGTGAGACCCCCTCCATTTACCTCACAAACATGGCCGTCTCATCATCCATCAGCAACATGCAGAATATTCACTGTTTATGAAAGATGCTAACCAGTGCGAATAATGCAATGCTGGTATTGATAAATTGTCATTTCTATCAAATGGAAGTAATGAAGCCTGTAACTTCCTGACGTTAAAGACGAGGCTGATTTGAATAAATGGTTAAACACAGGATAGCTGTAGCTAGAAGGGGGTTTGCTGGAGAAAGGAAACTTGGCCAGGCATGCCACTGTCAATTTTTGTCGTAACCTTTTGTTAGTTTTAGCTTTGTCCTGTTTCACCCAAGTAATGTTGGGAGGAACCGTAACCTTTTCAGTTGAgttaatgaaaataaaataattgcGGCGCATGAGCATTCCTTTACTTTGTCTGATTTCAATACTCAAATATTCTAGAACTTTGGAACCAAAAGATTCATATCAGAATTCTATAGGATGGTTATTGTGCATTAAGATAGCTGAATGTCTTTCTAGCAGAGGTGGACTGGAGGTTGGTCGGACTAGTTACAGCAGTTTGGGCCAGTGAAGGTCCAAGCCACAAGTTAATGTGAAACCCATTGATGTCCTCATGACCGGATTTGTACTTACTGCTCATAGATGTTTAGCCTACGTTTACTGTGTGTTCAATCAGTACTATAAACAACCGTGCATTCAAGAAGTGTTGAGCTGTGTTCCTCCTCCCCCCAGTACATTATTTCTTTGCAAATAACCAATTGtgatcatttgacatgttttgtacaatgtagacattaatttgtttttatttaataaaaCCAAATGTTCTGAACAA

Function

NR:

description
60 kDa heat shock protein, mitochondrial-like

GO:

id name namespace
GO:0031101 fin regeneration biological_process
GO:0042026 protein refolding biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K04077 groEL, HSPD1; chaperonin GroEL

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959263.1 False 2914 mRNA 0.52 10 38004829 38011876
XM_036959264.1 True 3022 mRNA 0.52 10 38004829 38012137

Neighbor

gene id symbol gene type direction distance location
LOC110501835 LOC106586372 coding downstream 8891 37972212 ~ 37995938 (-)
LOC110502141 LOC106582316 coding downstream 37544 37903148 ~ 37967285 (-)
LOC110501831 LOC106582318 coding downstream 143921 37851828 ~ 37860908 (-)
LOC110502128 LOC106582310 coding downstream 164153 37839001 ~ 37840676 (-)
LOC110502140 LOC106582322 coding downstream 169657 37834053 ~ 37835172 (-)
LOC110501839 rftn2 coding upstream 17365 38029502 ~ 38063991 (-)
LOC110502144 LOC106586344 coding upstream 292331 38304468 ~ 38383049 (-)
LOC110501845 LOC106582367 coding upstream 426047 38438184 ~ 38450743 (-)
LOC110501846 NA coding upstream 455054 38467191 ~ 38472484 (-)
LOC110501850 dbr1 coding upstream 473684 38485821 ~ 38491495 (-)
G1807607 NA non-coding downstream 76564 37927837 ~ 37928265 (-)
G1807588 NA non-coding downstream 130969 37872767 ~ 37873860 (-)
G1807587 LOC100380630 non-coding downstream 137892 37864964 ~ 37866937 (-)
G1807075 NA non-coding downstream 154455 37850101 ~ 37850374 (-)
G1807673 NA non-coding upstream 58729 38070866 ~ 38072483 (-)
G1807754 NA non-coding upstream 189864 38202001 ~ 38202385 (-)
G1807731 NA non-coding upstream 196653 38208790 ~ 38241273 (-)
G1807785 NA non-coding upstream 287047 38299184 ~ 38300194 (-)
G1807805 NA non-coding upstream 300118 38312255 ~ 38312661 (-)
G1807020 LOC105030512 other downstream 244581 37759971 ~ 37760248 (-)
G1806449 NA other downstream 892355 37043561 ~ 37112474 (-)
G1806393 NA other downstream 1068742 36935658 ~ 36936087 (-)
LOC110501806 sema5b other downstream 1426118 36552698 ~ 36837583 (-)
G1805927 LOC106582360 other downstream 1945061 36057844 ~ 36059768 (-)
G1807750 LOC106582372 other upstream 181285 38193422 ~ 38195096 (-)
LOC110502145 LOC106586333 other upstream 563729 38520872 ~ 38726596 (-)
G1808299 NA other upstream 931999 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2724511 40736648 ~ 40813437 (-)

Expression


Co-expression Network