LOC110501839 (rftn2)


Basic Information

Item Value
gene id LOC110501839
gene name rftn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38029502 ~ 38063991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959265.1
CAAATCACCTCCTCGCCTTCGGTCCTCCCATGTTTTCTCCCTCCTGCGAGCAGCCACGCTTTGGCTTTCATGAATCACTCACACATGTATTATTCGGCTTTACTAAAATCACTCTCGTTTTTTTAAGTGGATGATACGAATAATATAATTTGATAGGCGAAAAGAAAACTAAAAGTGGATTTGTTGCCAATAAGTCGACGTTAGCAACAAAGTAGCCGCTCGCGCGCAGTGGTGGAGTTCTCAATTATTGTAactttttatgtttttttaatgGTTTTTTTTCTCCAAAGAACGAGAGCTTCACGCTTTTAACTATTTACAGAAAAATATAAAATTgcatattttttaattttttatttggcGTTCTTTGGTTGCCTATGACAGTGATTATCCGGGGGCAACGTCAAACGGCTTTATAGCGTCAACCCACACTGGATGGAGCAATCCGGTTAACTTTATATCAATAGCAAAGCTCTTTTTGTCGGCTAACTGTCATCGTGCCCGGTTAGTGTGAGCTGGATATCCCGCTACGGCACTATGGGCTGCGGGTTGAGGAAACTGGAAGACCCAGAGGACAGTAGCCCCGGGAAGATATACTCCACTCTGAAGAGACCGCAAGTGGAGACCATAACAGACACCGTTTACGAGTATGTGCTACTGGACTTCAGTTTGGAAGgtagtCGCCCCACTGTGCAGTATATGTCCTCTCTGTGTGAGCTGCCACAGGCCCTGCAGCCCTACTACATCCAGGGCTATGTCctcaccaccctgcatcccattATCCTCTCTGTTGGACGCACACGCTCCCTGCCCTTCAGCCTGCTCTACCGAGCCATCCTCACCCGCCCACGACCCAGcAAGCAGGCGGTGTCCATGTGTCACAGTGTTCCGGTGTTGAGGGTGGAGGAGTGGCCTATCACAGGACAGTCTCTGACGGGTGACAGTGTTAGAGCACTGATTGACAGGGTGAACAGTCGTGCCCGGGCGGGCGTGAGGTTTGTGGGCTCGGTGCTCCAGCCGGCTGGAGGAGGGGCCAGTAACGATAGGATGCCTAGCCCCAGGAGGGGCTGCCGATCACTCCCACGCACTCCTCCATGTACCCCTCCTGGTGATGGAGACACAGACCTGGAGGAGCACAGCCCTACCTACAGCCCAGaCCTGAGGTTGCTGGTGTTTTTCCACTCGTGGGCACCAGGCTGTGCTCCTCTGGAAGCTCTGGCCTTCCAGTACCACCAGGGGGCGCTGTCCATGCGCGTGTCCAGGAAGGGTCAGATGGTGAGCTCGCTGGAGGCCGATTGGCTGGAGCTGACTGCAGCCTACTACCGCAAAGGCTGGTCATTGGTGGACTCGTTTGTGTACTGGGACACACCCAAAGGTGAGCCTGTGCCCAGGTCACTAGAGGGGCTGTTTGTCTATGAGGAGAGAAGCACTGCCCCTCCTGCCAATGACACTATCGTAGTGGAGCAGTGGATCGTCATCGAGGGTTCTGATGTGAAGACAGATTACGGGCCACTCCTTCACACACTGGCTGAGTTCGGCTGGCTGCTCACCTGTGTCCTGCCCACACATATCATCCGCCATGACAGtGATGGTAACCTGGCAACCAAGCATGTGGTGTTCCTACAGAGACCAATCAAGACCTCTTCAATACCACAGAGGAACCATGCCGGGTCCATTCAGCGCGACGTGTCCACTCGCTCTGTGAGTCGAGGTGTGGACAGCCCCCTAACACCCCCCAATGTGGAGTTGTCCCCCACCGCTGGGGGTATCGGGGGGTTCCCCGTCTTCGGAGGGGGGTACCCCAGCACCCTGTCCCACCTAGAGGGGGGCTTGGAGCATGATGACGGGGCGGCAGAGGTGACCTGCATGTGACCCCTGAAATGGACACATATATACACCCCCCCATCTATTCCTCTAATCGCTTCCCTAACCAAGAATACTAGAAAAGCTAAACTTGGCACTGTGTGTTTTAAATTCTGAAgtgttatttttatacattttgttgGGAAAAGCAGGCTGTCGAGACACCTTTGTTCGTACCCTCACACAGTCCAGATTCACACAGCACCCTTTTCATATGATgagaaagaacacacacacattcacacaactgTGACCAGCAGAAAGCACAGGACATCTCCACAATGACCGGGGGAACCAGGAAGAAGCTTCCATACAGACCCCTGGATTGAACTCTGACCAACTACACACCTGGTTGTTGGAACGTGTCCCCATGTTTTGGGACCCCCTCCCCCAGAACTGCCAACACCCCCGTTCAATACAACTTTATCTCATCCTCTGACGTGTAACATCACACCTACTCTGGCACATGGTGACACGGGCCAGAAGCACAGCTCCATTGGGTTGAATACATTGTAGTGcagctgactaggtattcccTTTCCTGccaccagctcctctcccctgTTGTCTCAAACACACCCAGCTGGATGGAAACGTACCAGGCGGACAAACACACGCTCGCTGTGTGTTGGTGCTACTGTCCAGGGCCTTGCAGCATTTAGCAATATTATTCAAACAGACATCTTCCTGTGATAGTTGTCAAACTAGGGGTGTTTGAGTTCAGGCCTGGAGAAGATTATTTGTACAGTAATTGCATGGGTGAGTTTTATTTCCACATACCAGACTGCCAAGCCACAGGGTTGCCTGGGAATGAATTGATAACATACAGAACCTTCTCTAGATATGTACATTAGGGCTATACATGTGTTGTCTGATTGTTCACTGATCTGTTCAGGATGTCATCATTTTTATTCATTGGCATCAGATTCTATTCCTGCACCCATTGTCATTAGAAATAGCTGGTAGTTATTATTTTGAGGCCTGATAACCAGTACCATAATTGTTTTCATTCTGCCCGGTGATGAT
>XM_036959266.1
CAAATCACCTCCTCGCCTTCGGTCCTCCCATGTTTTCTCCCTCCTGCGAGCAGCCACGCTTTGGCTTTCATGAATCACTCACACATGTATTATTCGGCTTTACTAAAATCACTCTCGTTTTTTTAAGTGGATGATACGAATAATATAATTTGATAGGCGAAAAGAAAACTAAAAGTGGATTTGTTGCCAATAAGTCGACGTTAGCAACAAAGTAGCCGCTCGCGCGCAGTGGTGGAGTTCTCAATTATTGTAactttttatgtttttttaatgGTTTTTTTTCTCCAAAGAACGAGAGCTTCACGCTTTTAACTATTTACAGAAAAATATAAAATTgcatattttttaattttttatttggcGTTCTTTGGTTGCCTATGACAGTGATTATCCGGGGGCAACGTCAAACGGCTTTATAGCGTCAACCCACACTGGATGGAGCAATCCGGTTAACTTTATATCAATAGCAAAGCTCTTTTTGTCGGCTAACTGTCATCGTGCCCGGTTAGTGTGAGCTGGATATCCCGCTACGGCACTATGGGCTGCGGGTTGAGGAAACTGGAAGACCCAGAGGACAGTAGCCCCGGGAAGATATACTCCACTCTGAAGAGACCGCAAGTGGAGACCATAACAGACACCGTTTACGAGTATGTGCTACTGGACTTCAGTTTGGAAGgtagtCGCCCCACTGTGCAGTATATGTCCTCTCTGTGTGAGCTGCCACAGGCCCTGCAGCCCTACTACATCCAGGGCTATGTCctcaccaccctgcatcccattATCCTCTCTGTTGGACGCACACGCTCCCTGCCCTTCAGCCTGCTCTACCGAGCCATCCTCACCCGCCCACGACCCAGcAAGCAGGCGGTGTCCATGTGTCACAGTGTTCCGGTGTTGAGGGTGGAGGAGTGGCCTATCACAGGACAGTCTCTGACGGGTGACAGTGTTAGAGCACTGATTGACAGGGTGAACAGTCGTGCCCGGGCGGGCGTGAGGTTTGTGGGCTCGGTGCTCCAGCCGGCTGGAGGAGGGGCCAGTAACGATAGGATGCCTAGCCCCAGGAGGGGCTGCCGATCACTCCCACGCACTCCTCCATGTACCCCTCCTGGTGATGGAGACACAGACCTGGAGGAGCACAGCCCTACCTACAGCCCAGaCCTGAGGTTGCTGGTGTTTTTCCACTCGTGGGCACCAGGCTGTGCTCCTCTGGAAGCTCTGGCCTTCCAGTACCACCAGGGGGCGCTGTCCATGCGCGTGTCCAGGAAGGGTCAGATGGTGAGCTCGCTGGAGGCCGATTGGCTGGAGCTGACTGCAGCCTACTACCGCAAAGGCTGGTCATTGGTGGACTCGTTTGTGTACTGGGACACACCCAAAGGTGAGCCTGTGCCCAGGTCACTAGAGGGGCTGTTTGTCTATGAGGAGAGAAGCACTGCCCCTCCTGCCAATGACACTATCGTAGTGGAGCAGTGGATCGTCATCGAGGGTTCTGATGTGAAGACAGATTACGGGCCACTCCTTCACACACTGGCTGAGTTCGGCTGGCTGCTCACCTGTGTCCTGCCCACACATATCATCCGCCATGACAGGCCGGGTCCATTCAGCGCGACGTGTCCACTCGCTCTGTGAGTCGAGGTGTGGACAGCCCCCTAACACCCCCCAATGTGGAGTTGTCCCCCACCGCTGGGGGTATCGGGGGGTTCCCCGTCTTCGGAGGGGGGTACCCCAGCACCCTGTCCCACCTAGAGGGGGGCTTGGAGCATGATG

Function

symbol description
rftn2 Predicted to be located in plasma membrane. Orthologous to human RFTN2 (raftlin family member 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959265.1 False 2889 mRNA 0.51 8 38029502 38063991
XM_036959266.1 True 1764 mRNA 0.54 7 38030548 38063991

Neighbor

gene id symbol gene type direction distance location
LOC110501838 LOC100136430 coding downstream 17365 38004829 ~ 38012137 (-)
LOC110501835 LOC106586372 coding downstream 33564 37972212 ~ 37995938 (-)
LOC110502141 LOC106582316 coding downstream 62217 37903148 ~ 37967285 (-)
LOC110501831 LOC106582318 coding downstream 168594 37851828 ~ 37860908 (-)
LOC110502128 LOC106582310 coding downstream 188826 37839001 ~ 37840676 (-)
LOC110502144 LOC106586344 coding upstream 240477 38304468 ~ 38383049 (-)
LOC110501845 LOC106582367 coding upstream 374193 38438184 ~ 38450743 (-)
LOC110501846 NA coding upstream 403200 38467191 ~ 38472484 (-)
LOC110501850 dbr1 coding upstream 421830 38485821 ~ 38491495 (-)
LOC110502145 LOC106586333 coding upstream 456881 38520872 ~ 38726596 (-)
G1807607 NA non-coding downstream 101237 37927837 ~ 37928265 (-)
G1807588 NA non-coding downstream 155642 37872767 ~ 37873860 (-)
G1807587 LOC100380630 non-coding downstream 162565 37864964 ~ 37866937 (-)
G1807075 NA non-coding downstream 179128 37850101 ~ 37850374 (-)
G1807673 NA non-coding upstream 6875 38070866 ~ 38072483 (-)
G1807754 NA non-coding upstream 138010 38202001 ~ 38202385 (-)
G1807731 NA non-coding upstream 144799 38208790 ~ 38241273 (-)
G1807785 NA non-coding upstream 235193 38299184 ~ 38300194 (-)
G1807805 NA non-coding upstream 248264 38312255 ~ 38312661 (-)
G1807020 LOC105030512 other downstream 269254 37759971 ~ 37760248 (-)
G1806449 NA other downstream 917028 37043561 ~ 37112474 (-)
G1806393 NA other downstream 1093415 36935658 ~ 36936087 (-)
LOC110501806 sema5b other downstream 1450791 36552698 ~ 36837583 (-)
G1805927 LOC106582360 other downstream 1969734 36057844 ~ 36059768 (-)
G1807750 LOC106582372 other upstream 129431 38193422 ~ 38195096 (-)
G1808299 NA other upstream 880145 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2672657 40736648 ~ 40813437 (-)

Expression


Co-expression Network