LOC110501846


Basic Information

Item Value
gene id LOC110501846
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38467191 ~ 38472484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038832.1
TTGGTCTGCAAATGCTCGTGAGGGCGCTCTGATGCTGTCTTGGCCGGCAGCCTTACGAGGGTCAACACGTGGAGACCGTAATAAGCATGTAACCCTTGTTGTCCTCAGGGGCTCTCATCGGCAGCTTAGTCGTTTTGCTTGAAAcgtgagaaaagggtgtttaccTCGTCCGGTAGAGCGGTGTTGGTGTCGGCGACGTGACGCATTCTTTTTGTAATCTGCGATTGTTAGAAGCCCTGACACATGTGCCTTCATCCAAAGTTTTCACATTCTATGATCAGATTTCGTTGTTGGCAATTACCTTTATCTTATGTCAACATGGATTTGATTCGGgtgaatgtattattattatcctGGCAATCTTTCATAGATAGGTGAGGTCACAGTTAAACCTTTACTTAGTGTTTTGCCAGAGGTTATAATGCCCTACATAGAAGTATCTGACCTGACTTTGAACAAAGACACATTTCCCTCCGTACCACAGGACGGCGCAGTAGAGCTTTGATCAACATAACTGTGCTCTTTTCCTCCGGAGAGAACCTAAGCGTCACCAAAGATTTGTTTAACTAACCCTCGTTGTTCTAGCTCTGGCGTCACGTGACAAAGCTGCAAAATCAAAACAGTTCTCTCTATTTATCTGTATAAACAATGTAACCAGCTCCTGAATTCATTTACTCATGTAAGTTAAATAATCAATAGGTCCATCTCTCTTCCAATAACATTGGCGAGAGAAGAACTGCACACGTGTTAATGAATAAACGAAcaagtgagctagctagctaattcatTGACAGATGTTCTGATAATGCCAGTAACCAACCAAAGAAAAGCAACATCAGGAGAGAGATGATGCGGTGTTCTGCTCTTTGACTTTACATCTAATGCAGCAACTGCCTTAATATTACTGGAGCAATAGTAGTATAGCAATCATATCAGTAGTATAGCAGTGTAATAACTAGTGTTATGCAGGTGCCCTTTCTGTTCATTAGTTTGTCTGTAATGTGGaaactgtgtgtttgtggctACTAGCTATATGTCATTATActgttgtgactgtgttgtgttgttgctGTGTCAGGTGCAGGGCACCAACGACAGCAGTGTGCTCAGTAAGGTGTCTGCTGTAGCTCAGGGTTACTTCCTGGATGACTACCTGAAGCAGTTTGTGTTTAAGGAGTTTAGGAGAGCCCCTCTCATCAACAGGTCGCTAAGATAGAAACataacatgtgcacacacacacactcaatagaTTTGTAGAGTTAGAAGGATCTTCCTCtatgtatttgtttgtgtttgtacTGTATCTCTGGTGCAGGGATTACTATGGGGTTACTATGTACGCTGGAGAGCTGTAGACCACTGTGTCAAGCAGTTTCTGTGGCTGACAGAAAGCTGCCCCAGGAGACAGGTAAGCTTAGCCTGGTCCaaggtctgtttgtgctgttttgccAAATCCTCCCCTGTGACGacccccatagtgtcccctcccCCAAGGTCAGCGCTGAGCCCTCTCTCCCTGGTGGTGAAGCCCATGCATGGGGAGCTGTGTGTGGAGGGTCTGAGGATGGCCTCTACCTTTACTGGGTCCTGGGCTGGTGCTGCTCAGTGGGGGTTCAGGCAGAGTGGGTAGAGGGGCTGTCCCCTCCTCCCAGGTGTCCGACTGTATCACACTGTACCATCTGTCCCAAACTGTCCATCTGTCCCTCGGTGGGGAGCTGTGGCGTTTCCACTCCACCCAATCAGAACCCTTTTCAGAGTGAGCTATGACCCTTGTGACCTGCCTGACCCAGTTGCACCTGACAACCAGGCCTCACTGAGGCTCCCCTTGAAGGAGATAGGCTGTGCTGGCAACCTGCCTCAACCAAGACGGAGGCACACTGCGACCATACTGAGGCAGGAAGGTCAGAACTTCCTTTCTGTGTTTGAAGGGCAGAACGAGGCTGAGGATGCACTGTATCTTGATGACCAGCGTTGGACCGAGACTCTTGACGGGTCAACAATGATGGCTCtgattggtggaggaggaaactGCTTCGCCTTTGGGACTCATCACAACCCTCACCCTGTCACTGTGGACCTCAAGCCTGTTCTATAACAATGGTTGCTAGAAGTATTCTTTGTGAGGACATTTTTGTACAGTATCAACTTGGTATTGGAAACCTGAGTCGACCTGTGGCAGTGGAACTGAAGCATCGATAAGCTATCTTGACACCTGTAGAACTCAAGGTCATGGTGACATTCTCTTATTGTTATTAGTTCCTTTGTTATTCGGGCGATTCCAACAGAAAAGATTGCTCCCTCTAGCTTTCACCAAAATGAGTCAGTGGCTGAGTTACACATACAGAAGTACATCTTCCTTTGGGTTGCAGCAGTTCAGGGCCATGGGCTACCTTCCAgccctacacactcactcacacagacacataaaAAAGTCCCAACATATCAGATCTGCTTACCAGACACATTTTTATTTCAGGTGAAACAAAGGACTCACAGTAAAAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAAAAGGATAGGACTCACAGTAAAAGGATAGGACTCACAGTAAAAGGATAGGACTCACAGTAATAGGATAGGACTCACAGTAATAggatcaaataacattttattggtcacatccacgtgtttagcagattccttccccagtcgtcattgtttTTGTTTCATATCTGTGTGTTGTTAATGTTTCGGTTCATGTTCCGTTTATTTGATTAAAACACTGACTCTCAGGGCACAGCGTTACAGAATGACGACTCAacaaagggaagcatcagggagtgttttttctgtttttgtgttgaAGGCGATGTTGGGTCCGGGTGTTGGAGCTGGAGCTACCTGGGAGGTCTCAGCCGTTTGTTAACTGGATGAACAGGTCCCCATGCCTCAGCCGAGGCTCTTAGTCCTCAGCCGGTTCGTCAGGTTTCTGCGCCTCAGCGGAGGCGACCGATCCGCTCCGgatccccgggatcgtccctGTGGTTGGAGCCGACTGCGCCGGGTAGGGGATACTGTCACGTATGATCTCTCCGGCGCTCTAGGTCGTCATGCTCCCACGCCTTAGCAGAggtgaccggtccgctcctgatccctgGGATCCTCATCTTGtcggcgtcctgcggctggagccacGCGTCGGGTAGCGGGTACCTGTGCTCCTTCTCCGGCCACCAGGCTGCTCgtttatggcgcacacctgtcaccagcacTACGTGGATTtgcgcataatgacactcacctggactccatcacctccttgattacctgccctatatatgtcaccccctttggtttctt

Function

NR:

description
uncharacterized protein LOC110501846

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038832.1 True 3369 mRNA 0.48 3 38467191 38472484

Neighbor

gene id symbol gene type direction distance location
LOC110501845 LOC106582367 coding downstream 16448 38438184 ~ 38450743 (-)
LOC110502144 LOC106586344 coding downstream 84142 38304468 ~ 38383049 (-)
LOC110501839 rftn2 coding downstream 403200 38029502 ~ 38063991 (-)
LOC110501838 LOC100136430 coding downstream 455054 38004829 ~ 38012137 (-)
LOC110501835 LOC106586372 coding downstream 471253 37972212 ~ 37995938 (-)
LOC110501850 dbr1 coding upstream 13337 38485821 ~ 38491495 (-)
LOC110502145 LOC106586333 coding upstream 48388 38520872 ~ 38726596 (-)
ccnyl1 LOC106582379 coding upstream 401930 38874414 ~ 38892741 (-)
LOC110501854 LOC106582380 coding upstream 427000 38899484 ~ 38929741 (-)
LOC118943608 NA coding upstream 438980 38911464 ~ 38913545 (-)
G1807805 NA non-coding downstream 154530 38312255 ~ 38312661 (-)
G1807785 NA non-coding downstream 166997 38299184 ~ 38300194 (-)
G1807731 NA non-coding downstream 225918 38208790 ~ 38241273 (-)
G1807754 NA non-coding downstream 264806 38202001 ~ 38202385 (-)
G1807673 NA non-coding downstream 394708 38070866 ~ 38072483 (-)
G1807893 NA non-coding upstream 31374 38503858 ~ 38504231 (-)
G1807917 NA non-coding upstream 87458 38559942 ~ 38560352 (-)
G1807918 NA non-coding upstream 91696 38564180 ~ 38564943 (-)
G1807922 NA non-coding upstream 108600 38581084 ~ 38597380 (-)
G1807923 NA non-coding upstream 109351 38581835 ~ 38582313 (-)
G1807750 LOC106582372 other downstream 272095 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 706943 37759971 ~ 37760248 (-)
G1806449 NA other downstream 1354717 37043561 ~ 37112474 (-)
G1806393 NA other downstream 1531104 36935658 ~ 36936087 (-)
G1808299 NA other upstream 471652 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2264164 40736648 ~ 40813437 (-)
LOC110501886 rhg15 other upstream 2975415 41447899 ~ 41523764 (-)
G1811042 NA other upstream 3132490 41604974 ~ 41605231 (-)

Expression


Co-expression Network