LOC110501850 (dbr1)


Basic Information

Item Value
gene id LOC110501850
gene name dbr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38485821 ~ 38491495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959278.1
ACTACGCGGAGGTGGGAAAAACGTTCCGAGTCATACATTTTGGTTGAGATAAACAGAACAAACCAACATAATcatggtagctagttagctaactctATCGTAACGTCAAAGTGCAAAAGACGAGAAACAATTGAACATCTCGGCACAGAAAAAGAAGGCCCTTACGGGAGTCTACAGCCAATCATCAgccatgaaaatagctgtggaaGGGTGTTGCCATGGAGAGCTGGATAAGATCTATGAGACGATTGGCTACCTGGAGCAGAAGGAGGGGGTGAAGGTAGACCTGCTGCTGTGTTGTGGAGACTTCCAGGCTGTGAGGAACGAGGGGGACATGAAGTGCATGGCTGTGCCGCAAAAGTACAGGCAGATGCAGACCTTCTACAAGTACTACTCTGGAGAGAAGAAGGCTCCGGTCCTGACTATCTTCATCGGTGGGAATCACGAGGCCTCCAACCATCTCCAGGAGCTCCCGTACGGGGGCTGGGTGGCTCCCAACATCTACTACATGGGTTATGCTGGTGTTGTGCGCTACAAAGGAGTAAGGATAGGTGGCTTGTCTGGAATCTTCAAAGGGCATGATTACAGGAAAGGACATTATGAGTTCCCTCCATATAACCCAGAAACCCTACGCAGTGTTTACCACATCAGGAACATCGATGTCTTCAAACTCAAACAGATCCAGATGCCTGTAGATGTGTTCCTGACCCATGACTGGCCTCGTGGGATCTACCATTACGGCAGCACAGGGGAGCTTCTGAGGAAGAAGAAGTTCCTGAGGCAGGAGGTGGAGTCCAACACACTGGGTAGTCCTGCAGCAGCAGAGCTCCTGGCCCACCTGCAGCCTAACTACTGGTTCTCTGCGCACCTCCACGTCAAGTTCGCTGCCCTAATGCAGCACCCGGCCAAAGTTGATGCTGCCCCCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCATACAGGGACTTCctacagATCGTAGAGGTAGCAGACAGGCCAGGATCGTCCCAGGGTCTGGAGTATGATCCAGAGTGGCTGGCCATCCTCAAAGCTACAGACAGCCTGCAGACTGTCAGCCCTAATTACTGGAACCCCCCGCAGAACAATGGCCTGCACACAAGGTGGGACTTCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGACCTGGGGGGTGAACTGTCCATCCCTGACAACTTCTGCCTGACCGTGCCAGCTTACGACCCTGCCCGGCCACAGCCCCATGCCCACCCCAGCTACAGCACCAACCCGCAGACCACCGAGCTCTGTGCCACCCTGGGTCTCAGAGACATCTATGCCCAGGTTGGGCAGGGAGGGTATGGGGGCCAGATAGGCACCCCAGAGCTGGAGGATGATGAAGTCCAGAGTGGAGATGAACCCAGTGAGTACCCTAGTGACACCTCAGGCCTGTCCAGCTCCTACAACCCTGATGAGATCACCATAGAGGAtgagtgggaggaagaggaggagggaggagagaaagagggaagggggaAGAGCCCTGATGCAGTGGTCCCAGAGGGGGAAGCGGGGGAGGCAGGAGGGAGACGGGACTCGGGGCCCCCCTCTAGAGAGCTGCCCCCCAGCCGCATGGTTCTGACCATGCCTGAGCCCAAATCAGACCCCGCTCCTCCCTCACGCCTGTCCCTCaacctacctcctccctctcactcctcACCTccggaaagggaggaggaggaggaggagccccATGTCCGGATCCCTAAGCGCACCAGTGGGGAGACGGGGGACCCTATCAGTACAGGCAGCACCCCTAGGATCAAACGCAGGAACCAGGTCATCTACACTGCAGTGGACGATAATGAGAGTGAGGACTAGGGCTGGAACTTGACCCAGGTTTCAGGGGGAAGTCCGTGGGAACTGTTGTCAAATAGAAGATTCTTATTATCTCCTTTTTATATTGCTATTGTCGTTCTTCAATGCAAACcaacagagttttttttttttttagtataGGGAGAGTGGAGAATCCCATgatggaaatgtatttttttaagtcTGTTCAGTTCCTTTTTTAAATTATGAAATAAAGAAAATGGTGattttaagaaaaaaataagttGAATTTCAGATGAGGCACACTGTTTCCTCAGTAGTTTTCCACTGTGGGTCAACTTCAAAAGGGCTGTGTTGGGAAACAACAAAAGGTTAAGAACATGAATATGTTTGTACACCAAATAGTCATAAACCAATTTTGAACATGAACCTTATGACATCTTTACTTTAGCCAGAAGTCAAATTCTTGCCAAAGTTTAA
>XM_036959277.1
AAAACGTTCCGAGTCATACATTTTGGTTGAGATAAACAGAACAAACCAACATAATcatggtagctagttagctaactctATCGTAACGTCAAAGTGCAAAAGACGAGAAACAATTGAACATGTTAGTTTGATTTGACTAGTGATTGCATTGCATGCATCTCTTAGCCAGGACAAGTCTACAACCCCGGACGGTGGACGTGTGATAGCTAGCAGTTATCTACTGGAGCTACTCGGCACAGAAAAAGAAGGCCCTTACGGGAGTCTACAGCCAATCATCAgccatgaaaatagctgtggaaGGGTGTTGCCATGGAGAGCTGGATAAGATCTATGAGACGATTGGCTACCTGGAGCAGAAGGAGGGGGTGAAGGTAGACCTGCTGCTGTGTTGTGGAGACTTCCAGGCTGTGAGGAACGAGGGGGACATGAAGTGCATGGCTGTGCCGCAAAAGTACAGGCAGATGCAGACCTTCTACAAGTACTACTCTGGAGAGAAGAAGGCTCCGGTCCTGACTATCTTCATCGGTGGGAATCACGAGGCCTCCAACCATCTCCAGGAGCTCCCGTACGGGGGCTGGGTGGCTCCCAACATCTACTACATGGGTTATGCTGGTGTTGTGCGCTACAAAGGAGTAAGGATAGGTGGCTTGTCTGGAATCTTCAAAGGGCATGATTACAGGAAAGGACATTATGAGTTCCCTCCATATAACCCAGAAACCCTACGCAGTGTTTACCACATCAGGAACATCGATGTCTTCAAACTCAAACAGATCCAGATGCCTGTAGATGTGTTCCTGACCCATGACTGGCCTCGTGGGATCTACCATTACGGCAGCACAGGGGAGCTTCTGAGGAAGAAGAAGTTCCTGAGGCAGGAGGTGGAGTCCAACACACTGGGTAGTCCTGCAGCAGCAGAGCTCCTGGCCCACCTGCAGCCTAACTACTGGTTCTCTGCGCACCTCCACGTCAAGTTCGCTGCCCTAATGCAGCACCCGGCCAAAGTTGATGCTGCCCCCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCATACAGGGACTTCctacagATCGTAGAGGTAGCAGACAGGCCAGGATCGTCCCAGGGTCTGGAGTATGATCCAGAGTGGCTGGCCATCCTCAAAGCTACAGACAGCCTGCAGACTGTCAGCCCTAATTACTGGAACCCCCCGCAGAACAATGGCCTGCACACAAGGTGGGACTTCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGACCTGGGGGGTGAACTGTCCATCCCTGACAACTTCTGCCTGACCGTGCCAGCTTACGACCCTGCCCGGCCACAGCCCCATGCCCACCCCAGCTACAGCACCAACCCGCAGACCACCGAGCTCTGTGCCACCCTGGGTCTCAGAGACATCTATGCCCAGGTTGGGCAGGGAGGGTATGGGGGCCAGATAGGCACCCCAGAGCTGGAGGATGATGAAGTCCAGAGTGGAGATGAACCCAGTGAGTACCCTAGTGACACCTCAGGCCTGTCCAGCTCCTACAACCCTGATGAGATCACCATAGAGGAtgagtgggaggaagaggaggagggaggagagaaagagggaagggggaAGAGCCCTGATGCAGTGGTCCCAGAGGGGGAAGCGGGGGAGGCAGGAGGGAGACGGGACTCGGGGCCCCCCTCTAGAGAGCTGCCCCCCAGCCGCATGGTTCTGACCATGCCTGAGCCCAAATCAGACCCCGCTCCTCCCTCACGCCTGTCCCTCaacctacctcctccctctcactcctcACCTccggaaagggaggaggaggaggaggagccccATGTCCGGATCCCTAAGCGCACCAGTGGGGAGACGGGGGACCCTATCAGTACAGGCAGCACCCCTAGGATCAAACGCAGGAACCAGGTCATCTACACTGCAGTGGACGATAATGAGAGTGAGGACTAGGGCTGGAACTTGACCCAGGTTTCAGGGGGAAGTCCGTGGGAACTGTTGTCAAATAGAAGATTCTTATTATCTCCTTTTTATATTGCTATTGTCGTTCTTCAATGCAAACcaacagagttttttttttttttagtataGGGAGAGTGGAGAATCCCATgatggaaatgtatttttttaagtcTGTTCAGTTCCTTTTTTAAATTATGAAATAAAGAAAATGGTGattttaagaaaaaaataagttGAATTTCAGATGAGGCACACTGTTTCCTCAGTAGTTTTCCACTGTGGGTCAACTTCAAAAGGGCTGTGTTGGGAAACAACAAAAGGTTAAGAACATGAATATGTTTGTACACCAAATAGTCATAAACCAATTTTGAACATGAA
>XM_036959276.1
TGATGGGTTATGTCGAGTTAATATGTGTGTCTTTGGTCTGTTTGAAATATCGTTTCATCTTCTAATGAAACTAGTATTTATATTTACCAACTGGCTACATTGTAGATGATCGAATGTCAATTTGTAAATCAACTCAATCAAGTAAATTTTGCTTCTAAACGCGCAGGTTTGACATTGAAGCATGGCTGATTAAGACGCGATTGTTATAAGCATTTATGTGCATACAACAAATATTTGTATTCGTAAAGAAGTGCTGGTATTGGGAAGTATTACAGTTTGGGATAATGTATAGGTGTTTGactatttgtaaattattttgattGTGGAAAGTGCTACCTACGAATCCATCAGTCGATTTACTTTGGGGAATATTGGAGCATGCGCTGAGGTCTAACTACGCGGAGCTCGGCACAGAAAAAGAAGGCCCTTACGGGAGTCTACAGCCAATCATCAgccatgaaaatagctgtggaaGGGTGTTGCCATGGAGAGCTGGATAAGATCTATGAGACGATTGGCTACCTGGAGCAGAAGGAGGGGGTGAAGGTAGACCTGCTGCTGTGTTGTGGAGACTTCCAGGCTGTGAGGAACGAGGGGGACATGAAGTGCATGGCTGTGCCGCAAAAGTACAGGCAGATGCAGACCTTCTACAAGTACTACTCTGGAGAGAAGAAGGCTCCGGTCCTGACTATCTTCATCGGTGGGAATCACGAGGCCTCCAACCATCTCCAGGAGCTCCCGTACGGGGGCTGGGTGGCTCCCAACATCTACTACATGGGTTATGCTGGTGTTGTGCGCTACAAAGGAGTAAGGATAGGTGGCTTGTCTGGAATCTTCAAAGGGCATGATTACAGGAAAGGACATTATGAGTTCCCTCCATATAACCCAGAAACCCTACGCAGTGTTTACCACATCAGGAACATCGATGTCTTCAAACTCAAACAGATCCAGATGCCTGTAGATGTGTTCCTGACCCATGACTGGCCTCGTGGGATCTACCATTACGGCAGCACAGGGGAGCTTCTGAGGAAGAAGAAGTTCCTGAGGCAGGAGGTGGAGTCCAACACACTGGGTAGTCCTGCAGCAGCAGAGCTCCTGGCCCACCTGCAGCCTAACTACTGGTTCTCTGCGCACCTCCACGTCAAGTTCGCTGCCCTAATGCAGCACCCGGCCAAAGTTGATGCTGCCCCCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCATACAGGGACTTCctacagATCGTAGAGGTAGCAGACAGGCCAGGATCGTCCCAGGGTCTGGAGTATGATCCAGAGTGGCTGGCCATCCTCAAAGCTACAGACAGCCTGCAGACTGTCAGCCCTAATTACTGGAACCCCCCGCAGAACAATGGCCTGCACACAAGGTGGGACTTCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGACCTGGGGGGTGAACTGTCCATCCCTGACAACTTCTGCCTGACCGTGCCAGCTTACGACCCTGCCCGGCCACAGCCCCATGCCCACCCCAGCTACAGCACCAACCCGCAGACCACCGAGCTCTGTGCCACCCTGGGTCTCAGAGACATCTATGCCCAGGTTGGGCAGGGAGGGTATGGGGGCCAGATAGGCACCCCAGAGCTGGAGGATGATGAAGTCCAGAGTGGAGATGAACCCAGTGAGTACCCTAGTGACACCTCAGGCCTGTCCAGCTCCTACAACCCTGATGAGATCACCATAGAGGAtgagtgggaggaagaggaggagggaggagagaaagagggaagggggaAGAGCCCTGATGCAGTGGTCCCAGAGGGGGAAGCGGGGGAGGCAGGAGGGAGACGGGACTCGGGGCCCCCCTCTAGAGAGCTGCCCCCCAGCCGCATGGTTCTGACCATGCCTGAGCCCAAATCAGACCCCGCTCCTCCCTCACGCCTGTCCCTCaacctacctcctccctctcactcctcACCTccggaaagggaggaggaggaggaggagccccATGTCCGGATCCCTAAGCGCACCAGTGGGGAGACGGGGGACCCTATCAGTACAGGCAGCACCCCTAGGATCAAACGCAGGAACCAGGTCATCTACACTGCAGTGGACGATAATGAGAGTGAGGACTAGGGCTGGAACTTGACCCAGGTTTCAGGGGGAAGTCCGTGGGAACTGTTGTCAAATAGAAGATTCTTATTATCTCCTTTTTATATTGCTATTGTCGTTCTTCAATGCAAACcaacagagttttttttttttttagtataGGGAGAGTGGAGAATCCCATgatggaaatgtatttttttaagtcTGTTCAGTTCCTTTTTTAAATTATGAAATAAAGAAAATGGTGattttaagaaaaaaataagttGAATTTCAGATGAGGCACACTGTTTCCTCAGTAGTTTTCCACTGTGGGTCAACTTCAAAAGGGCTGTGTTGGGAAACAACAAAAGGTTAAGAACATGAATATGTTTGTACACCAAATAGTCATAAACCAATTTTGAACATGAA
>XM_036959280.1
TGATGGGTTATGTCGAGTTAATATGTGTGTCTTTGGTCTGTTTGAAATATCGTTTCATCTTCTAATGAAACTAGTATTTATATTTACCAACTGGCTACATTGTAGATGATCGAATGTCAATTTGTAAATCAACTCAATCAAGTAAATTTTGCTTCTAAACGCGCAGGTTTGACATTGAAGCATGGCTGATTAAGACGCGATTGTTATAAGCATTTATGTGCATACAACAAATATTTGTATTCGTAAAGAAGTGCTGGTATTGGGAAGTATTACAGTTTGGGATAATGTATAGGTGTTTGactatttgtaaattattttgattGTGGAAAGTGCTACCTACGAATCCATCAGTCGATTTACTTTGGGGAATATTGGAGCATGCGCTGAGGTCTAACTACGCGGAGCTCGGCACAGAAAAAGAAGGCCCTTACGGGAGTCTACAGCCAATCATCAgccatgaaaatagctgtggaaGGGTGTTGCCATGGAGAGCTGGATAAGATCTATGAGACGATTGGCTACCTGGAGCAGAAGGAGGGGGTGAAGGTAGACCTGCTGCTGTGTTGTGGAGACTTCCAGGCTGTGAGGAACGAGGGGGACATGAAGTGCATGGCTGTGCCGCAAAAGTACAGGCAGATGCAGACCTTCTACAAGTACTACTCTGGAGAGAAGAAGGCTCCGGTCCTGACTATCTTCATCGGTGGGAATCACGAGGCCTCCAACCATCTCCAGGAGCTCCCGTACGGGGGCTGGGTGGCTCCCAACATCTACTACATGGGACATTATGAGTTCCCTCCATATAACCCAGAAACCCTACGCAGTGTTTACCACATCAGGAACATCGATGTCTTCAAACTCAAACAGATCCAGATGCCTGTAGATGTGTTCCTGACCCATGACTGGCCTCGTGGGATCTACCATTACGGCAGCACAGGGGAGCTTCTGAGGAAGAAGAAGTTCCTGAGGCAGGAGGTGGAGTCCAACACACTGGGTAGTCCTGCAGCAGCAGAGCTCCTGGCCCACCTGCAGCCTAACTACTGGTTCTCTGCGCACCTCCACGTCAAGTTCGCTGCCCTAATGCAGCACCCGGCCAAAGTTGATGCTGCCCCCCGCACTACCAAATTCCTCTCACTGGATAAGTGCCTCCCATACAGGGACTTCctacagATCGTAGAGGTAGCAGACAGGCCAGGATCGTCCCAGGGTCTGGAGTATGATCCAGAGTGGCTGGCCATCCTCAAAGCTACAGACAGCCTGCAGACTGTCAGCCCTAATTACTGGAACCCCCCGCAGAACAATGGCCTGCACACAAGGTGGGACTTCAGTGCTTCTGAGGCAGCCATGATGGAGGCTGTGGGTGACCTGGGGGGTGAACTGTCCATCCCTGACAACTTCTGCCTGACCGTGCCAGCTTACGACCCTGCCCGGCCACAGCCCCATGCCCACCCCAGCTACAGCACCAACCCGCAGACCACCGAGCTCTGTGCCACCCTGGGTCTCAGAGACATCTATGCCCAGGTTGGGCAGGGAGGGTATGGGGGCCAGATAGGCACCCCAGAGCTGGAGGATGATGAAGTCCAGAGTGGAGATGAACCCAGTGAGTACCCTAGTGACACCTCAGGCCTGTCCAGCTCCTACAACCCTGATGAGATCACCATAGAGGAtgagtgggaggaagaggaggagggaggagagaaagagggaagggggaAGAGCCCTGATGCAGTGGTCCCAGAGGGGGAAGCGGGGGAGGCAGGAGGGAGACGGGACTCGGGGCCCCCCTCTAGAGAGCTGCCCCCCAGCCGCATGGTTCTGACCATGCCTGAGCCCAAATCAGACCCCGCTCCTCCCTCACGCCTGTCCCTCaacctacctcctccctctcactcctcACCTccggaaagggaggaggaggaggaggagccccATGTCCGGATCCCTAAGCGCACCAGTGGGGAGACGGGGGACCCTATCAGTACAGGCAGCACCCCTAGGATCAAACGCAGGAACCAGGTCATCTACACTGCAGTGGACGATAATGAGAGTGAGGACTAGGGCTGGAACTTGACCCAGGTTTCAGGGGGAAGTCCGTGGGAACTGTTGTCAAATAGAAGATTCTTATTATCTCCTTTTTATATTGCTATTGTCGTTCTTCAATGCAAACcaacagagttttttttttttttagtataGGGAGAGTGGAGAATCCCATgatggaaatgtatttttttaagtcTGTTCAGTTCCTTTTTTAAATTATGAAATAAAGAAAATGGTGattttaagaaaaaaataagttGAATTTCAGATGAGGCACACTGTTTCCTCAGTAGTTTTCCACTGTGGGTCAACTTCAAAAGGGCTGTGTTGGGAAACAACAAAAGGTTAAGAACATGAATATGTTTGTACACCAAATAGTCATAAACCAATTTTGAACATGAA

Function

symbol description
dbr1 Predicted to enable RNA lariat debranching enzyme activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human DBR1 (debranching RNA lariats 1).

NR:

description
PREDICTED: lariat debranching enzyme isoform X1

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0008419 RNA lariat debranching enzyme activity molecular_function

KEGG:

id description
K18328 DBR1; lariat debranching enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959278.1 False 2308 mRNA 0.52 9 38485821 38491102
XM_036959277.1 False 2348 mRNA 0.52 9 38485872 38491085
XM_036959276.1 False 2523 mRNA 0.50 9 38485872 38491495
XM_036959280.1 True 2442 mRNA 0.50 8 38485872 38491495

Neighbor

gene id symbol gene type direction distance location
LOC110501846 NA coding downstream 13337 38467191 ~ 38472484 (-)
LOC110501845 LOC106582367 coding downstream 35078 38438184 ~ 38450743 (-)
LOC110502144 LOC106586344 coding downstream 102772 38304468 ~ 38383049 (-)
LOC110501839 rftn2 coding downstream 421830 38029502 ~ 38063991 (-)
LOC110501838 LOC100136430 coding downstream 473684 38004829 ~ 38012137 (-)
LOC110502145 LOC106586333 coding upstream 29377 38520872 ~ 38726596 (-)
ccnyl1 LOC106582379 coding upstream 382919 38874414 ~ 38892741 (-)
LOC110501854 LOC106582380 coding upstream 407989 38899484 ~ 38929741 (-)
LOC118943608 NA coding upstream 419969 38911464 ~ 38913545 (-)
LOC118943609 NA coding upstream 487012 38975839 ~ 38989602 (-)
G1807805 NA non-coding downstream 173160 38312255 ~ 38312661 (-)
G1807785 NA non-coding downstream 185627 38299184 ~ 38300194 (-)
G1807731 NA non-coding downstream 244548 38208790 ~ 38241273 (-)
G1807754 NA non-coding downstream 283436 38202001 ~ 38202385 (-)
G1807673 NA non-coding downstream 413338 38070866 ~ 38072483 (-)
G1807893 NA non-coding upstream 12363 38503858 ~ 38504231 (-)
G1807917 NA non-coding upstream 68447 38559942 ~ 38560352 (-)
G1807918 NA non-coding upstream 72685 38564180 ~ 38564943 (-)
G1807922 NA non-coding upstream 89589 38581084 ~ 38597380 (-)
G1807923 NA non-coding upstream 90340 38581835 ~ 38582313 (-)
G1807750 LOC106582372 other downstream 290725 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 725573 37759971 ~ 37760248 (-)
G1806449 NA other downstream 1373347 37043561 ~ 37112474 (-)
G1806393 NA other downstream 1549734 36935658 ~ 36936087 (-)
G1808299 NA other upstream 452641 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2245153 40736648 ~ 40813437 (-)
LOC110501886 rhg15 other upstream 2956404 41447899 ~ 41523764 (-)
G1811042 NA other upstream 3113479 41604974 ~ 41605231 (-)

Expression


Co-expression Network