LOC118943609


Basic Information

Item Value
gene id LOC118943609
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38975839 ~ 38989602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038835.1
aggtattaaagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatag
>TU2068911
cagaatagagatagtaaagggaatagaggtagtaaagggaatagaagtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaaggcagaatagaggtagtaaagggaatagaggtagtaaaatGAATAGAGATAGtcaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaaggaaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaaggcagAATAGAGGGAATATAGGTAGTAAAAgtaatagaggtagtaaagggaatataGGTAGTAAATGGAATAGAGATAGtcaagggaatagaggtagtaaaaggaatagaggtagtaaagggaatagaggtattcaatggaatagaggtagtaaagagaatagaggtagtaaagagaATAGAtgtattaaagggaatagaggtagtaaaaggAATAGCGGTAGTAAAGAgaatagaggtattaaagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtagtaaagggaatagaggtagtatagggagaataaaggggaaaaggtaATAGAGGTAGGAAAGACGGAATAGAGGGAATAGAGGTGGTAAAGGCAGAATAGAgatagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagagggagTAAAGGGAGAATAAAGGGGAAAGGGAATAGAGGTGGTAAAGGCAGAatagagggaatagaggtagtaaaggcaaaatagaggtagtaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtattaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaagTAGTAAatggaatagaggtagtaaagggaatagagatagtaaaaggaatagaggttgtaaaaggaatagaggtattaaagggaatagagatagtaaagggaatagaggtagtaaaggcagaatagaggtagta
>TU2068909
GAatagagggaatagaggtagtaaaggcaaaatagaggtagtaaagggaatagaggtagtaaaggaactagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagagctattaaagggaatagaggtagtaaaaggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagatgtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatacaggtagtaaaaggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtagtaaaggcagaatatagggaatagaggtagtaaaggaattagaggtagtaaagggaatagaggtagtaaagggaatagaagtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaaggcagaatagaggtagtaaaaggaatagaggtagtaaaatgaatagagATAGtcaagggaatagaggtagtaaaggcagaatagaggtagtaaaagaaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagg
>TU2068912
cagaatagagatagtaaagggaatagaggtagtaaagggaatagaagTAGTAAAGGCAGAATATAGatattaaagggaatagaggaattaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtatagGGAGAATACAGGGgaaaagggaatagaggtaggaAAGGcggaatatagggaatagaggtGGTAAAGGCAGAATAGAgatagtaaagggaatagaggaaTTAAAGGCAGAatagagggaatagaggtagtaaaggcagaatagagatagtaaagggaatagaggtagtaaagggaatagagGTAGTATAGGgagaataaaggggaaaagggaatagaggtaggaAAGGTGGAatagagggaatagaggtagtaaaggcagaatagagatattaaagggaatagaggtagtatagggaatagaggtagtatagGGAGAATAAAGGGGAAAAGTGAATAGAGGTAGGAAAGGCGGAATAGAGGGAAAAGAGGTGGTAAAGGCAGAATAGAgatagtaaagggaatagaggtagtaaaggaaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaagagaatagaggtattaaagggagtagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaggcagaatagagggaatagaggaaataaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtattaaaaggaatagaggtagtaaagacagaatagagggaatagaggtagtaaaggaaatagaggtattaaagggaatagaggtagaaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtagtaaaggaaATAGAGGTATTAAatggaatagaggtagtaaaggcagAATAGAGATAGAAAAGGGAATATAGGTAGTAAAAGGAATAGAGGTagcaaagggaatagaggtagtaaaaggaatagagatattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaaggcaaaatagaggtagtaaaggaaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaataggaatagaggtattaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtagtaaaggcagaatatagggaatagaggtagtaaaggaattagaggtagtaaagggaatagaggtagtaaagggaatagaagtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaaggcagaatagaggtagtaaaaggaatagaggtagtaaaatgaatagagATAGtcaagggaatagaggtagtaaaggcagaatagaggtagtaaaagaaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagg
>TU2068926
GAatagagggaatagaggtagtaaaggcaaaatagaggtagtaaagggaatagaggtagtaaaggaactagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagagctattaaagggaatagaggtagtaaaaggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagatgtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatacaggtagtaaaaggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaagTAGTAAatggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaag
>TU2068932
cagaatagagatagtaaagggaatagaggtagtaaagggaatagaagTAGTAAAGGCAGAATATAGatattaaagggaatagaggaattaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtatagGGAGAATACAGGGgaaaagggaatagaggtaggaAAGGcggaatatagggaatagaggtagtaaaggcagaatggagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtattaaaaggaatagaggtagtaaagacagaatagagggaatagaggtcgtaaaggaaatagaggtattaaagggaatagaggtagtaaagggaatagaggaattaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggttgtaaaggaaatagaggtaggaaagggaatagaggtagtaaagggaatagagggagtaaaaggaatagaggtagtaaaggaaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtattaaagggaatagaggtattaaagggaatagaggtagtaaaggcagaatagagggaatagaggtagtaaagggaatagaggtagtaataggaatagaggtattaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtagtaaaggcagaatatagggaatagaggtagtaaaggaattagaggtagtaaagggaatagaggtagtaaagggaatagaagtagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtagtaaaggcagaatagaggtagtaaagggaatagaggtagtaaaatGAATAGAGATAGtcaagggaatagaggtagtaaaggcagaatagaggtagtaaaagaaatagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaaggg
>TU2068916
ggaatagaggtagtaaaaggaatagaggtagtaaaaggaatagaggtattaaagggaatagagatagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggtagtaaagggaatagaagTAGTAAatggaatagaggtagtaaagggaatagaggtagtaaaaggaatagaggttgtaaaaggaatagaggtattaaagggaatagagatagtcaagggaatagaggtagtaa
>TU2068913
AGATAGtcaagggaatagaggtagtaaaaggaatagaggtagtaaagggaatagaggtattcaatggaatagaggtagtaaagagaatagaggaagtaaagggaatagaggtattaaaggaaatagaggtattaaaggtaatagaggtagtaaagggaatagaggtagtaaagggagaataaaggggaaaagggaatagagGTGGTAAAGGCAGAatagagggaatagaggtagtaaaggcaaaatagaggtagtaaagggaatagaggtagtaaaggaactagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggt
>TU2068934
ggtattaaaggCAGAATAGAgatagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagagggagTAAAGGGAGAATAAAGGGGAAAGGGAATAGAGGTGGTAAAGGCAGAATAGAgatagtaaagggaatagaggtagaaaagggaatagaggtagtaaagggaatagaggtagtatagggagaataaaggggaaaaggtaATAGAGGTAGGAAAGACGGAATAGAGGGAATAGAGGTGGTAAAGGCAGAATAGAgatagtaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagagggagTAAAGGGAGAATAAAGGGGAAAGGGAATAGAGGTGGTAAAGGCAGAatagagggaatagaggtagtaaaggcaaaatagaggtagtaaagggaatagaggtagtaaaggaactagaggtattaaagggaatagaggtagtaaagggaatagaggtagtaaagggaatagaggtattaaagggaatagaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038835.1 False 166 mRNA 0.37 3 38978507 38980026
TU2068911 False 1477 lncRNA 0.37 6 38975839 38989524
TU2068909 False 743 lncRNA 0.36 6 38978185 38987961
TU2068912 False 1926 lncRNA 0.37 6 38978185 38989524
TU2068926 False 720 lncRNA 0.36 4 38978579 38987961
TU2068932 False 1174 lncRNA 0.37 5 38980554 38989524
TU2068916 False 268 lncRNA 0.35 2 38980814 38981398
TU2068913 False 360 lncRNA 0.37 5 38981662 38988696
TU2068934 True 520 lncRNA 0.40 3 38981662 38989602

Neighbor

gene id symbol gene type direction distance location
LOC110501854 LOC106582380 coding downstream 48766 38899484 ~ 38929741 (-)
LOC118943608 NA coding downstream 64962 38911464 ~ 38913545 (-)
ccnyl1 LOC106582379 coding downstream 85766 38874414 ~ 38892741 (-)
LOC110502145 LOC106586333 coding downstream 251911 38520872 ~ 38726596 (-)
LOC110501850 dbr1 coding downstream 487012 38485821 ~ 38491495 (-)
klf7b klf7 coding upstream 18656 38998682 ~ 39154770 (-)
LOC110502146 LOC106582388 coding upstream 449646 39429672 ~ 39436466 (-)
LOC118943588 NA coding upstream 457173 39437199 ~ 39441516 (-)
ramp1 LOC106582391 coding upstream 610003 39590029 ~ 39680169 (-)
LOC110501861 LOC106582392 coding upstream 703194 39683220 ~ 39731114 (-)
G1808302 NA non-coding downstream 25949 38952230 ~ 38952558 (-)
G1808297 NA non-coding downstream 37297 38940992 ~ 38941210 (-)
G1808284 NA non-coding downstream 61355 38915248 ~ 38917152 (-)
G1808063 NA non-coding downstream 111334 38866970 ~ 38867173 (-)
G1808062 NA non-coding downstream 111750 38866557 ~ 38866757 (-)
G1808343 NA non-coding upstream 79077 39059103 ~ 39059436 (-)
G1808352 NA non-coding upstream 91787 39071813 ~ 39074774 (-)
G1808353 NA non-coding upstream 101798 39081824 ~ 39086829 (-)
G1808362 NA non-coding upstream 112721 39092747 ~ 39094577 (-)
G1808367 NA non-coding upstream 128313 39108339 ~ 39123554 (-)
G1808299 NA other downstream 33977 38944136 ~ 38944530 (-)
G1807731 NA other downstream 765320 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 783411 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 1218259 37759971 ~ 37760248 (-)
LOC110501878 LOC106582406 other upstream 1756622 40736648 ~ 40813437 (-)
LOC110501886 rhg15 other upstream 2467873 41447899 ~ 41523764 (-)
G1811042 NA other upstream 2624948 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 3406796 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 3624677 42603998 ~ 42605768 (-)

Expression


Co-expression Network