LOC110501866 (LOC106582396)


Basic Information

Item Value
gene id LOC110501866
gene name LOC106582396
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40084457 ~ 40170141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959304.1
AATTGAGCATCAAATGGCAGCCTTGTGTCTTTATAGCAACTGCATGTCGATAATAATCAGATCTATATTACAAGACTCAAGCAAATGAACCCATGTATGAATCTGAGCAAATGAATCTTGATTTATAAATCTTTTCACTGCAGTTCCCTCTATCGTGCGAAATCTCGTCgtcagagagagtggagagagaggggtgtggccGTAAGGGGTCTGTTGCTGCTGATGCTGTGGAGATTGCGTTTATCTCTCATCTAGTCATCGCTTTCTGCACTTCGTCCTGTCAACACCGGCGTCATTCGCGCCCTGGATGGCTGCATTTGTAACTCCGGTGTGAGTTATTTTTTTCCCGAGGACTTTTGACTTATAAGTAAACAACCATGACTGACCCAATGACACAAGATTCATTCCCTGTCCCGGATCCCACATTCGTGGACCCTTCGGCCGTACGGAACGGCGGGTGCGCGTCTAATGCGAATCTATCCAAAATACCGAGTCAAGACGATCCTTTTAATATGGACCGGGACCAAGAGATGAGAATCACCGACAGCGTTGATGGTCAAGGTAGCCTGCTGGAGAGCAGCATGCGACTAAAGCCCCACGAGGCTCAGAACTACAGGAAGAAGGCATTGTGGGTGTCTTGGATCTCCATCGTGGTGACAATCATCCTGGCAGTGGCAGCCTTCActgTTTCATTCATGAGGCACAGCGCATCAGCCTTCGGATTTGCCTTTGACGCCACGTTGGACGTGCTATCTTCAATCATCGTGCTGTGGCGTTATAGCAACGCAGCAGCTGTCCACTCTGCCCATAGGGAATACATAGCGTGTGTGGTCCTTGGGGTGGTCTTTATCTTGTCCTCCCTGTGCATTCTGGGAAAAGCCATCCATGACCTGGCCACCAAGCTGCTTCCTGAAGTGgATGACTTCCTCTTCAGTGTGTCTATTGTCAGTGGGATTATGTGTATTATCCTGGCTGTGTTGAAGTTCATGCTGGGGAGAGTGCTGACCAGTAGAGCCCTCATCACTGACGCGTTTAACTCCATGGTGGGGGGCATCATGGGTTTCTCCATCCTAATCAGTGCTGAGGTGTTCAGACACCACCCTGACGTCTGGTACCTGGACGGATCCATCGGCGTCATCATCGGACTCGTCATCCTCGCGTATGGGGTCAAacTGCTGCTGGACATGGTACCCAGGGTGAGACAGACCAGGAACTACGAACGCTTTGAGTGAGCCAGTCACCAGATTAGTGCGATGCtccgaggaccagggttatacctgccacagcacctctctctctatatctctctctctctctctctctctctctctctctatctctctctctctctccctctctctatctctccctctctctata
>XM_036959305.1
ACAATTGAGCATCAAATGGCAGCCTTGTGTCTTTATAGCAACTGCATGTCGATAATAATCAGATCTATATTACAAGACTCAAGCAAATGAACCCATGTATGAATCTGAGCAAATGAATCTTGATTTATAAATCTTTTCACTGCAGTTCCCTCTATCGTGCGAAATCTCGTCgtcagagagagtggagagagaggggtgtggccGTAAGGGGTCTGTTGCTGCTGATGCTGTGGAGATTGCGTTTATCTCTCATCTAGTCATCGCTTTCTGCACTTCGTCCTGTCAACACCGGCGTCATTCGCGCCCTGGATGGCTGCATTTGTAACTCCGGTGTGAGTTATTTTTTTCCCGAGGACTTTTGACTTATAAGTAAACAACCATGACTGACCCAATGACACAAGATTCATTCCCTGTCCCGGATCCCACATTCGTGGACCCTTCGGCCGTACGGAACGGCGGGTGCGCGTCTAATGCGAATCTATCCAAAATACCGAGTCAAGACGATCCTTTTAATATGGACCGGGACCAAGAGATGAGAATCACCGACAGCGTTGATGGTCAAGGCCTGCTGGAGAGCAGCATGCGACTAAAGCCCCACGAGGCTCAGAACTACAGGAAGAAGGCATTGTGGGTGTCTTGGATCTCCATCGTGGTGACAATCATCCTGGCAGTGGCAGCCTTCActgTTTCATTCATGAGGCACAGCGCATCAGCCTTCGGATTTGCCTTTGACGCCACGTTGGACGTGCTATCTTCAATCATCGTGCTGTGGCGTTATAGCAACGCAGCAGCTGTCCACTCTGCCCATAGGGAATACATAGCGTGTGTGGTCCTTGGGGTGGTCTTTATCTTGTCCTCCCTGTGCATTCTGGGAAAAGCCATCCATGACCTGGCCACCAAGCTGCTTCCTGAAGTGgATGACTTCCTCTTCAGTGTGTCTATTGTCAGTGGGATTATGTGTATTATCCTGGCTGTGTTGAAGTTCATGCTGGGGAGAGTGCTGACCAGTAGAGCCCTCATCACTGACGCGTTTAACTCCATGGTGGGGGGCATCATGGGTTTCTCCATCCTAATCAGTGCTGAGGTGTTCAGACACCACCCTGACGTCTGGTACCTGGACGGATCCATCGGCGTCATCATCGGACTCGTCATCCTCGCGTATGGGGTCAAacTGCTGCTGGACATGGTACCCAGGGTGAGACAGACCAGGAACTACGAACGCTTTGAGTGAGCCAGTCACCAGATTAGTGCGATGCtccgaggaccagggttatacctgccacagcacctctctctctatatctctctctctctctctctctctctctctctctatctctctctctctctccctctctctatctctccctctctctata

Function

NR:

description
transmembrane protein 163-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959304.1 False 1380 mRNA 0.50 8 40084457 40170139
XM_036959305.1 True 1379 mRNA 0.50 8 40084457 40170141

Neighbor

gene id symbol gene type direction distance location
LOC110501865 LOC106582395 coding downstream 57304 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 231088 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 236460 39736429 ~ 39847997 (-)
LOC110501861 LOC106582392 coding downstream 353343 39683220 ~ 39731114 (-)
ramp1 LOC106582391 coding downstream 404288 39590029 ~ 39680169 (-)
LOC118943637 NA coding upstream 113264 40283405 ~ 40284842 (-)
LOC110501872 LOC106582401 coding upstream 281456 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 505162 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 605067 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 665035 40835176 ~ 40882242 (-)
G1809337 NA non-coding downstream 465 40080294 ~ 40083992 (-)
G1809313 NA non-coding downstream 46677 40037538 ~ 40037780 (-)
G1809307 NA non-coding downstream 53066 40031132 ~ 40031391 (-)
G1809304 NA non-coding downstream 58578 40025648 ~ 40025879 (-)
G1809297 NA non-coding downstream 71458 40012761 ~ 40012999 (-)
G1809405 NA non-coding upstream 251 40170392 ~ 40183895 (-)
G1809410 NA non-coding upstream 14304 40184445 ~ 40185458 (-)
G1809418 ccnt2 non-coding upstream 27454 40197595 ~ 40200422 (-)
G1809427 NA non-coding upstream 40548 40210689 ~ 40210912 (-)
G1809446 NA non-coding upstream 54515 40224656 ~ 40224887 (-)
G1808299 NA other downstream 1139927 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1472170 38520872 ~ 38726596 (-)
G1807731 NA other downstream 1871270 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 1889361 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2324209 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 1277758 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1434833 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 2216681 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2434562 42603998 ~ 42605768 (-)

Expression


Co-expression Network