LOC118943637


Basic Information

Item Value
gene id LOC118943637
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40283405 ~ 40284842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038968.1
AGATGCGATGTCTTCTCGCTGCATATTCAAGTGTGCTCTCAAGTTTCACAAGAAAGTTCTCCTAACATCTCGTCTGTTTGGCTTTGTCACATTTGCGTGGAGGGAAAGGAAGCAGCCTTCACTATTAACACACCAAAAAGTCCCTCGTCTTCTCTTCTGCGCTCCAGCCGACTCTTTTATCTGTGCCATTTGAGCTTGTGAACTTCACAACATACAGTATTCATACCAAGGTATGTGCTCCATTGGGCTGCCATTGAAACAGAACAAAGGGGCATCAGAATTCTCAGACAGAGTCCGTCCGAGGTTGGGGGCAGGGGCTGGAACCAAAGTGCTGCGCGTCGCCATGGAAACAGCGCCTGAGTGATAAGCTGCACTGCACTTGGAGTGTGAAAACGCTTCACAGCCATATTTCTGTTTATGGAAACGCTACGGAACCAGCTAGCAGCCACCGATCAAGCTGTGAACAGCTCTCCCACTGAACAGATCTCATTGTGCCATATCTCAAGCTGTCTCGCACGCTCACACATTTAGCCGAGCAAGAATGAGACGAAGGAAAGAAATACCAGCAACTTGATAGAAAAACGTCTGAGAAAGAAAGTTGTGGCTTTCCTTTCAGTCAGTCAGCGATGAGGCGTTTGAACAAGTTACAAGCTAAAAGCGCATAGAAAGGAGGCGTCATTATCCTGTTCGTGTTGGAGAAAACTCCCTAAAACACTGCGTATCATTATGTGGCTTAGTTATAATGTCCTTTGTGGTTGCTCATTGTAATATATTTTAGAACAGTGACTTGATCTAGTCAAGTTATCCCATTAATCTCTACTCCACAAGAAAGAATCCTACAgctctttttttctttcatcaaagAGATTCTTCATAGCCCAGAATTTCTTCAAAGTAAAAGCCTCTTTTCAGTGTAACAGATCAAATTAGAGCAAGGACTGTCATTAATGTAGAGGAAGTCATGTTGCCCGGAATAATAACATGTTAATGGGGAAACACTTCAGTTGGCTAAAGGACATTAGGCGTACTAAAGAGACAGAAAGGAAGCCATCACAGCGAGGCTAGAGTAGTTACATCCCTCTTCTGAATGAGGCACCAGCAGTGCATTGATGTGATAATGATTTTCACAGTCTGCTATTTACCTGCTGTTTACTTAGAAACAGCATTGTAAAATTGTTACCTAATATCTTACTTAATAACTGCAGTTTAGTATCTTTGAGATTCAGTGGGAAAAAAGCACCTTTAGTACCAGAATCGTAAGGTGTGAGTTGATCACAACACATCAACACACCAattaaattatacattttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038968.1 True 1312 mRNA 0.42 2 40283405 40284842

Neighbor

gene id symbol gene type direction distance location
LOC110501866 LOC106582396 coding downstream 113264 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 256252 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 430036 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 435408 39736429 ~ 39847997 (-)
LOC110501861 LOC106582392 coding downstream 552291 39683220 ~ 39731114 (-)
LOC110501872 LOC106582401 coding upstream 166755 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 390461 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 490366 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 550334 40835176 ~ 40882242 (-)
LOC110502149 LOC106586321 coding upstream 598754 40883596 ~ 40929237 (-)
G1809509 NA non-coding downstream 9657 40273400 ~ 40273748 (-)
G1809505 NA non-coding downstream 12440 40270740 ~ 40270965 (-)
G1809498 NA non-coding downstream 17522 40265654 ~ 40265883 (-)
G1809496 NA non-coding downstream 18074 40265068 ~ 40265331 (-)
G1809495 NA non-coding downstream 18879 40264313 ~ 40264526 (-)
G1809541 NA non-coding upstream 7998 40292840 ~ 40293039 (-)
G1809702 NA non-coding upstream 98115 40382957 ~ 40477289 (-)
G1809683 r3hdm1 non-coding upstream 106410 40391252 ~ 40391974 (-)
G1809737 ubxn4 non-coding upstream 154268 40439110 ~ 40440904 (-)
G1809742 ubxn4 non-coding upstream 157620 40442462 ~ 40448038 (-)
G1808299 NA other downstream 1338875 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1671118 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2070218 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2088309 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2523157 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 1163057 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1320132 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 2101980 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2319861 42603998 ~ 42605768 (-)

Expression


Co-expression Network