LOC110501878 (LOC106582406)


Basic Information

Item Value
gene id LOC110501878
gene name LOC106582406
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40736648 ~ 40813437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959327.1
TCCCAATAACCCGTCACCTAATGCAGCCTATTCCATTTCAAAGACGTTCAAAGAGTCACATCCGTAGCGAATACACCGACCTAACGCGAAAAGCTAACAAACGGAGGAGTGTATGTTTGTTTTTGGACTATTCTAAAGCTTGGACCCGAGGCGAAGTTTGAAGGCTGCAGGAGGAATTCCTGGTGTCATCGTGTTGTTGTCCAATCAGAGACCTGCATGTGTGAAGCCGCGGCCAGCAATGGAACCCTGGCCTGCAGTGGCCTGGGTCCTACTGCTGATGGTCCTCGCTGATTGGCTGAAAATGGCCCAATCAAAGGACTTCACAGAACAGGATAtcatctacctccatccctcaaCTACTCCATTCCCAGGCGGGTTCAAGTGCTTCACCTGTGAAGAAGCACCTGACAACTATGAGTGTAATCGCTGGGCGCCAGACCTGTACTGCCCACAAGAGGCTAGATACTGTTACACGCGGCACAAGATGGACATGGAGGGGGACAGTGTCTCTGTGACAAAGCGTTGTGTGGCTTTGGGAGACTGCCTCTCTACTGGATGCTCTGAAGAAGACAATGAAGGAACCAGGGTTTGCACAGCATGCTGTGAGGGGAATATCTGTAACCTTCCTCTCCCCTGGAACATGACTGAGGCTGTGTTCGCCACCACCTCACCCCTCAGCGGCACCACAGGGCTCTCACAGTGCTACACACTAACATCCAGCCTGCTCTACTTCACCCTGCTCATCTCCACCTATGTCTGACCAGTGGAAAGAAACACACATATATAGAGCATTTTATTTAACAGTTGAAGGTCTGATACGACTAGATGGACTCAATATACACCCGATGGAGATAGGACTCACTGCAGGTTTTGGACAATTTATTTCCCTTTTAATTCAATAGGAAACCAGTTTTGATGACCTTTCATCGTTATGCAGGGCCTCAATAAAACAAGCACTTAGAGCTCGACACTGCTTCTGAAATAGGCAATATGGCTGTCAATCGTGAAGGATCAAACATACTAAATATCACAGTATTCTCCCCCTACTAGTCTTCTGCACAGGGACAGAAGGAGGGGAACCGTGGCGTGTCTGGACTCGTCAGTAGGCTATAGGTCATTGTAAAAGCTGCCATATTTTCCAGTGAGGAGGaagaataacagacagacagacagcagcttcTGTGAGGATTAGTTTAGCTTGAACCTTTTTTGTGTTTTTATGTTTTCACATTTGTGAGTCGCTTCCCCATGTTGTATGTTTGACACATTATGTACATATAcatagtatttatttttttgaggaACATGTTTGTTAGACAGTGATTATGTATGTGTGAAATGTTAGCATTTAGGTAAAGTGGAACAGATAACACTGCTCATGTTTTTATGTGTAGTATGTGGAGAGTCTTTTTAACAACAGAATGAGAGCCTGGTGCCCATCAAACAAACGTAGAACGCTTTGCGTTTCTGTTGTGGAAAAACTATTTCCTCAAACCTTAAAAAGGATTAAAGTTAATTACAGGTCTATTTTGGCTTAACATTTTCCGATCATGAAAAATAAATCGGACTTTCCACACAGTGGAAGCAACCCCCATAGCTAAGCACAGCACTTGGGCTAGGCTTCGGGAGCTGTACTGTAATTCTAGCACTGCAGTTTTAGTGAGAGGCAACAATGCATGACACCATTATTTACTGATACTACATTGCATATGCTCTTAACCAGAGCtccttacagtagtgagtgcatacattttcatacatgtcccctgtgggaattgaacccacaaccttggcgTTGCAAACACCATGCtgaaccaactgagccacacaggatgcTCTACAGTCTTTCACTCACCCCTGTTTTAATGTTTTCCGTTCTCGTGACACATACCTCTGGTGTTTATACGGTGTTTCGTGACATGTTTGTCATCCATCACACTTTGTTGGCCGGCGTGGCTGCCTGGCTGGCCGAGAAAAATGCAGAGTAAGCAAATACAGTGTTATTGTTCTCCAGGCTTTTATGATTTGTTTAGGCCGACCGCCCGAGACATAGAGGAGACCGGTCATTTCAAATGGTATTTGAACCAAGGTGTGCaagcctccatctctctccatctccatctcatctctctctctctcacttacagGCAAATGCTAAGAGGAAAAGAGTGAAGCGTGATTTACAGATGGCAAACGTTTTTATCTACTGTAGTCTGCTCTGTTCACATTTGATAAATAAACATTCCGTTTTTTTTTATGGTGGGCCTTGTGTTGTCCACTATCACAGCAAGATTTTATCCTGTATTCTGAGCTTATCCAGAAATGAGAATTGCACCTGATTTGCATTTGTCTGAGGATGGTTCTGGACCATCTGAAACAAACAGAAAAAGGGGGCAgctttaaataaaggttcaaatccaGGTCATGTGACGATTGCTCAAAACACAGGGTCCTATTTATGGGGTAAACAAAGGAATTCTTtgtgattttggcaatgaggccctttatctattttcctagagtcagatgaactcatggacaccattttatgtctctgtgtcaagTACGAAGGACGTTGGAGGTAGTTTCGCtgttagcatgctagcagatacccatagacttccagtcattgtgctaacgctactTCACATTGGCTCGCGAAATAACCTCTaaccttcatactggacacagagtcATAAAAATGGTATTCATGAGTTCGTCTGACTCTAGGAaaatagataaagggcctcattgccaaaatcccgaagtatccctttaagggcTAGAACATGTTGTTCCCCTTTAAATCAATCAGGCAATACTAgagtttatctttaaaatatttcacaaggtcttttgcatTGTGACCTGAGAGccaatgtaacggatgtgaaacgctagcttagttagcggtggtgcgcgctaaatagcgtttcaattggtgacgccacttgctctgagaccttgaagtagtagttccccttgctctgcaagggctgcggcttttgtggagcgatgggtaacgatgcttcgtgggtgactgttgatgtgtgcagagggtccctggttcgcgcgaggggacggtctaaaattacaCTAAGTTACACCAACATATCTTGCCAGATGTTGCCTTAATCTGACTCTAGAGAAGCACCGTACAAGTGCGTTTGCATGAGTTTATCAACATTGATAACGTGGCTGTTGCATGTTATGTTGTGCCAATTGATATCATGTAAATATCATCTCTGTTTTTTTACATGCAATGTTTTTGTAAATaactgtgtatatatagatgtGAACGACTTTGTAACTTCATATTAAAGATGAAGACATGGCCACT
>TU2070925
AAGAGTCACATCCGTAGCGAATACACCGACCTAACGCGAAAAGCTAACAAACGGAGGAGTGTATGTTTGTTTTTGGACTATTCTAAAGCTTGGACCCGAGGCGAAGTTTGAAGGCTGCAGGAGGAATTCCTGGTGTCATCGTGTTGTTGTCCAATCAGAGACCTGCATGTGTGAAGCCGCGGCCAGCAATGGAACCCTGGCCTGCAGTGGCCTGGGTCCTACTGCTGATGGTCCTCGCTGATTGGCTGAAAATGGCCCAATCAAAGGACTTCACAGAACAGGATAtcatctacctccatccctcaaCTACTCCATTCCCAGGCGGGTTCAAGTGCTTCACCTGTGAAGAAGCACCTGACAACTATGAGTGTAATCGCTGGGCGCCAGACCTGTACTGCCCACAAGATGAAGACTTCTCCCTTCCTCATCACCTCCTCTGGCAATAACTG

Function

NR:

description
PREDICTED: ly6/PLAUR domain-containing protein 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959327.1 False 3340 mRNA 0.44 5 40775208 40813437
TU2070925 True 449 TUCP 0.51 4 40736648 40813387

Neighbor

gene id symbol gene type direction distance location
LOC110501875 LOC106582404 coding downstream 90664 40675303 ~ 40684544 (-)
LOC110501872 LOC106582401 coding downstream 280434 40451597 ~ 40494774 (-)
LOC118943637 NA coding downstream 490366 40283405 ~ 40284842 (-)
LOC110501866 LOC106582396 coding downstream 605067 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 748055 39960431 ~ 40027153 (-)
LOC110501879 LOC106586322 coding upstream 21739 40835176 ~ 40882242 (-)
LOC110502149 LOC106586321 coding upstream 70159 40883596 ~ 40929237 (-)
LOC110501881 LOC106582412 coding upstream 116822 40930259 ~ 40941980 (-)
LOC110501882 LOC106582411 coding upstream 128967 40942404 ~ 40988211 (-)
LOC110501883 LOC106582410 coding upstream 179478 40992915 ~ 41051487 (-)
G1810110 NA non-coding downstream 16993 40757108 ~ 40758215 (-)
G1810061 NA non-coding downstream 47288 40672439 ~ 40727920 (-)
G1810091 NA non-coding downstream 50971 40723796 ~ 40724237 (-)
G1809949 NA non-coding downstream 113377 40661625 ~ 40661831 (-)
G1809922 NA non-coding downstream 138828 40636177 ~ 40636380 (-)
G1810331 NA non-coding upstream 28367 40841804 ~ 40842020 (-)
G1810332 NA non-coding upstream 29391 40842828 ~ 40844532 (-)
G1810337 NA non-coding upstream 36367 40849804 ~ 40850003 (-)
G1810350 NA non-coding upstream 53583 40867020 ~ 40867225 (-)
G1808299 NA other downstream 1830678 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 2162921 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2562021 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2580112 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 3014960 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 634462 41447899 ~ 41523764 (-)
G1811042 NA other upstream 791537 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 1573385 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 1791266 42603998 ~ 42605768 (-)
G1812404 NA other upstream 1863820 42677257 ~ 42677760 (-)
G1809848 NA non-coding downstream 166281 40569839 ~ 40570367 (-)

Expression


Co-expression Network