LOC110502131 (LOC106582415)


Basic Information

Item Value
gene id LOC110502131
gene name LOC106582415
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41764963 ~ 41767178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579998.2
GTCagctgtctggtctgtctgctcCGTGTGGTTCATCTGCTGGCAGTCCGGGGATAGACGCAGACATATGCTACATGGTGTGCTGACTTTTACAATTAAGCTACCACAGACAACGGgAACAGGATGGATCCATCCCATTGGTTCATATTCATCATGTATGTTATCCCTTTTACATTCAAGAAAAGTACTGCTTGCTATGACGGGTGCAGCTGCCTCACAGATATAAAATATATCAACTGTTCGGGTGGGAATCTTACCACTCCTCTTAGGAATGTCCCCCACAACACAGAGTACCTGGACCTGTCCAGAAACCTGTTGACAGTGCTCCAAGAAGGTTCATTTGGGACCCTGTGGAGCCTGAGGGTGCTCCTTTTAAAAGAGAACAACCTCAGCCATGTAGATGACGGCGCTTTCTCCTCCCTCCGGGGGCTGAGGAGGCTGGACCTGAGCCATAACCACCTTTCTGCCCTGGGGCCTGGATTCTCCCTGGGCCTTGAATCCCTAACCGAGCTCCTGCTGGATCACAACCATCTCACCGTCCTGGAGAGTGGGACCTTCCACAGCCTGGATAGCCTCCAGAAGCTGGACCTGAGCAGCAACCTAATCTCCACAGTAAAGCCCAGAGCCCTGGGTTACCTGACTGGCCTGCGCCAGCTCCACCTGGAGGGGAACCATCTAACCTCCCTGGGTTCAGGCCTCTTCTCCACACTGCGCTCCCTGGAGGTGCTGGGCCTTCGGGGGAACTTGATCAGCTCCACTGAGCCAGGAGTCTTCGCCCCTATGTCTTCCCTAACTCTGCTGGACCTGGCCCTCAACCGTCTAAGCACCCTGGGCTACAGGACCCTGTTGAGCATCCACACCCCCAGCCTCCATGTCCTGTTGGAGGGCAACCCCTGGCACTGTGATTGCGACCTGCAGAGGGTGTTCAGGAAGTTGTCCAGCATCCACAGGGTCTTCCTGGATGACTACCAGGAGCTGAGGTGCAGCCAGCCCACCGAGCTACAGGGCAGGTCCATGGGAGAAGTGGATGATGAGCTGTGTGTCGGCGAGACTGTGACAGTGCTCATTCTGACGGTCACCGTGGTGATCACCGTGGTAGCTGCCATTATCATGGCGGAGAAGAACAAGAAGAATAGCGTGGCTAAGAACTGGGAGGAGAGCGTGGGGCTGGACACCTACTGTGACAATTACAATTAAGGCTGTCACCTGCTCATGTTACAACAATGACAACTCACTGTCCCTCAGTACCCAATGTGGTTAGATCTGATCTGATTAACAACATGGAATGCAAGCAGATTTTCTTCAGATAACTCTAACTATTCTCAAAGAGATTCACCCTCTTAGCTTGTAGAACAGGAAATCTCGTATTGATTCCCTATAGAAGGCAGTGAAAGACTTCTATAAGACTACTATTTCGCTGTGACAGTTGACATGGCCACCGTTAGGGGCAGAATAACTAACCCACCAAATGCCATAAGACTGTTCTTTAGTAATGCAAGTTTAAAAGTGTAAAAGTTATTGACAAATTCCAATCATGCATATGTTTTGTAATCATTTCCTACACCTCAAAATGACAATGTTGATACAGGTATgctttacagtgccttcaaaaactATTAATACCCATAGACTGGTTTTGTGTTGCAGCCTGACTACAAAATGGTTTAAATATAGTTTTTCTCTcccccaataccccataatgacaaagtgaaaacatgtttttagaagtgtttgcaaatttattgaaaatgaaaaataTAAATATCAAATTAAAGGAAAAtcaacatttttgtccattaaaataacatcaaattgatcagaaatacagtgtagacattgttaatgatgTAAATAacttttgtagctggaaacggctgtttttttatggaatatctacataggtgtaca

Function

NR:

description
leucine-rich repeat-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579998.2 True 1908 mRNA 0.47 2 41764963 41767178

Neighbor

gene id symbol gene type direction distance location
LOC110501888 LOC106582420 coding downstream 21139 41668896 ~ 41743824 (-)
LOC110501887 LOC106582419 coding downstream 140167 41622821 ~ 41624796 (-)
LOC110502151 arl4c coding downstream 151827 41612562 ~ 41613136 (-)
LOC110501886 rhg15 coding downstream 241199 41447899 ~ 41523764 (-)
LOC118943638 NA coding downstream 317691 41439948 ~ 41447272 (-)
LOC110502152 LOC106582422 coding upstream 31276 41798454 ~ 41899740 (-)
LOC110501896 LOC106582434 coding upstream 825040 42592218 ~ 42603449 (-)
LOC110502155 psd12 coding upstream 836820 42603998 ~ 42605768 (-)
LOC110501897 LOC106582436 coding upstream 973441 42740619 ~ 42748577 (-)
LOC110501898 LOC106582438 coding upstream 1003075 42770253 ~ 42797492 (-)
G1811240 NA non-coding downstream 135 41764627 ~ 41764828 (-)
G1811169 NA non-coding downstream 118697 41646002 ~ 41646266 (-)
G1811165 NA non-coding downstream 121971 41642769 ~ 41642992 (-)
G1811025 NA non-coding downstream 174465 41589230 ~ 41590498 (-)
G1810940 NA non-coding downstream 311376 41449902 ~ 41453587 (-)
G1811279 NA non-coding upstream 25256 41792434 ~ 41792652 (-)
G1811414 NA non-coding upstream 125371 41892549 ~ 41892759 (-)
G1811419 NA non-coding upstream 127776 41894954 ~ 41895190 (-)
G1811421 NA non-coding upstream 130048 41897226 ~ 41897449 (-)
G1811439 NA non-coding upstream 143640 41910818 ~ 41911038 (-)
G1811042 NA other downstream 159732 41604974 ~ 41605231 (-)
LOC110501878 LOC106582406 other downstream 951576 40736648 ~ 40813437 (-)
G1808299 NA other downstream 2820433 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 3152676 38520872 ~ 38726596 (-)
G1812079 LOC106582433 other upstream 619644 42386822 ~ 42389273 (-)
G1812404 NA other upstream 910079 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 2743229 44473683 ~ 44553607 (-)
G1814480 NA other upstream 2906269 44673447 ~ 44673888 (-)

Expression


Co-expression Network