LOC110502152 (LOC106582422)


Basic Information

Item Value
gene id LOC110502152
gene name LOC106582422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41798454 ~ 41899740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959343.1
AGGACTGTTAACGGGGGAGTGGTTTACTTTTTCACTTCGCTTCAAGCACAGCGCATGATTCCGTCCGCGCTTGAGACATTTGGAGGCATCGCTTTCATGAGATTTAATCTCTTTTTACAACAAGGATATATCACAGTAGCGAGGATGGAATTGAGAAAGTTGTCACGGTTATATTTCTTCATTGTCTGTGTTTTGAACACCTCCAGCTCTGCATCCGCTGCCAATCACCATATCTGCAATGGCCCATTGGTATCCATGCTGCCCCGGGGCTCTTTTGTGAGCTCCTCTCAGTCCTCTGTCAGTTATGCTCCACACTTCTCCAAGATCAACAGAAGAGATGGAGCGGGAGGCTGGTCTCCCCAGGTGACAGATAGACATCCTTGGCTGCAGCTGgacctcagagacaggatagaggtGACGGCCGTCGCCACACAGGGGCGCTACGGAAGCTCAGACTGGGTCAGCGGCTACCTGCTCCTGTTCAGTGACACAGGCCGAGCCTGGAAGCAGTACCGACAGGAGGACGGGGTGGGGAGGTTTGTGGGGAATGTGAATGCTGACGGTGTCGTCCACCACAAGTTGTCCCACTCTATCAGAGGCCGCTTCCTGCGCTTCGTCCCCCTGGACTGGAACCCCAGTGGCTGGGTGGGACTCAGAGTGGAGGTCTACGGCTGTGCCTACAAATCAGACGTGGCAGACTTTGATGGCAGAAGTTCCCTGCTCTACCGGTTTAACCAGAAGTCCATGAGCACGGTGAAGGATGTGATCTCATTGCGCTTCAAGAGCCGCCAGGCTGAGGGGGTGCTGCTCCATGGAGAGGGTCAGAGGGGCAACTACATCACACTGGAGCTGCACCGGGCCAGGCTGGCCCTCTACCTCAACCTGGATGACACACGGCTGCGGTTCAGCAGTGGGCGTGTTGCGGTCACTCTCAGCAGTCTTCTGGACGACCAGCACTGGCACTCTGTCCTCATCGAGCGCTTCAACAAGCAGGTCAACCTCACCGTGGACACCCACACACAGCACTTCAGGACCAAGGGGGAAGGAGACTCCCTGGAGGTGGACTATGAGCTCAGCTTCGGGGGCATCCCACTGCCAGGTAAGCCTGGTACCTTCCTGAGGAAGAACTTCCATGGCTGCATGGAGAACCTCTACTACAATGGGATCAACATCATCGACCTAGCCAAGCGACGCAAGCCTCAGATCTACAGCGTGGGCAACGTGACCTTCTCGTGCTCTGAGCCCCAGCTGGTGTCCACTACCTTCCTGAGCTCCAGCAGCAGCTTCCTGTCGCTCCCGGCCACGCTGTCTGCTTCAGGGGGCTTCGCTGTGCGTTTCCAGTTCAGAACGTGGAACCCAGATGGGCTACTGCTCTCCACCCGGCTGGCCCTGGAGCCCCAGCGACTGGAGCTGCAGATCAGCAACAGTCGGCTGCGCCTGACCCACCACATGTCAGCCCAGCAGAAAGAAGAGGTCTCCACCGGTCACAGAGTGAATGATGGACTGTGGCACTCTGCGAGTCTCAGCTCCCGAGGTCTCCAGGTCACCATGACTCTGGACAATGAGCCGTCCTCAACTATGGAGCTGGGAGACCACATGGAGGCAGGAGACAGCCTCTACTTCGGAGGTTGTCCGTCTCTGAACGTCTCAGGCTGTGAGAACCCCACATTGGCGTTCCAGGGGTGCATGCGTCTCTTCTCCATCAACAGCCAGCCCATGGACCTGAACCTGGTGCACCAAGGACGACTAGGAGACTACAAGGAGCTGCAGTTTGACACATGTGGCATCCATGACAGATGTCTGCCCAACTTCTGTGAACATGGAGGGCAGTGTTCCCAGTCTTGGAGCTGCTTCTACTGCGACTGCTCTGGGACAGGATACACTGGAGCCACCTGCCACAACTCCATCTATGAGGCATCATGTGAGGCCTACCGTCTGACTGGCAGCTCCTCAGGCTACTTCTCCATTGATCCAGATGGCAGTGGTCCACTGGCGCCCACACTGGTCTACTGCAACATGACAGagaACAAGGTGTGGACAGTAGTGACCCACAACAGCACAGATCCAGTCAGGGTCCAGGGTTCTACACTACAGAAGCCCTACATTATGAAGTTTAACTACAGCGCCTCACCTGAACAACTGCTGGCCCTCGTGTCCGGGTCAGAGCAATGTCAACAGGAAGTTATGTACAGCTGTAGGAAGTCCCGCCTCTTCAACACCAGAGATGGCAGCCCTCTGTCCTGGTGGGTGGACCAGGGTGGAGAGAGACGGACCTACTGGGGAGGCTTCCTGCCAGGTGTTCAGCAGTGCTCCTGCAGCCTGGAGGAGAATTGCATGGACATGAACTACTTCTGCAACTGTGATGCAGACACAGACTCATGGTCTAATGACACAGGAGTACTTTCTTACAAAGAGCACTTACCAGTGAGTGAGATCGTGATTGGGGACACCAACAGAACTGGCTCTGAGGCGCTCTACAGAATCGGCCCGCTGCGTTGTTATGGCGACAAGTCTGTGTGGAATGCAGCGTCCTTCTACCAGGAGTCATCCTACCTGCACTTCCCCACCCTCCAGGCAGAGCTCAGCGCTGATATCTCCTTCTACTTCAAGACCAGCGCTCCCTCAGGAGTCTTCCTGGAGAACGTGGGCCTCAAGGACTTCATCAGAGTGGAGCTCAGCTCTCCGTTTGCAGTGACGTTCTCCTTTGATGTGGGAAACGGGCCGGTGGTCCTGGCCATTAAGTCCCACGTGCCCCTGAATGATAGGCAGTGGCACTATGTGAGGGCGGAGCGCAGCGTGAAGGAGGCCTCGCTGCAGGTGGACCAGCTGCCCCTGCGCTTCCTGGAAGCTCCATCTGAGGGACACCTCCGCCTCCGGCTCAACAGCCAGCTGTTTGTGGGGGGAACGGCGGCTAGGCAGAGGGGCTTCTTGGGTTGCATCAGAACTCTGACTGTAAACGGTGTGACCTTTAGCCTGGAGGAGCGGGCTAAGATGACCCCGGGGGTGAGCGCTGGCTGCCCCGGCCACTGTAGTGGCTCCAGCAGTCTCTGCCACAACAGCGGGAGGTGCATTGAGAAGAACAGCGGCTACGTCTGTGACTGCTCTCAGTCTGCCTATGGGGGGCCCTCCTGCAAGGAAGAGGTGTCTGTGTCGTTTAACAGAGAGTCGTCGGTGACCTACACCTTCCAGGAGCCTTTCTCTGTGATGCAGAATAGGAGCTTCCAGGCCTCCAGTGTCTACAGAGGGAACAGCAGGGCCGGAGAGAACATGGCTTTCATTTTCATGACCACACAGAGCCCTGCCATGCTGCTCACTGTCAGCACCTTCAGCCAGCAGTACATAGCAGTCATCCTGGCACGCAACGGGAGTATCCAGATCTGGTACCATCTCCATGTggacaggaggccagatgtgtTCAGTCCCAGACCCTCCAGCCTGGCAGACGGACGCCTCCACCGTATCAGAATCCACCGTGAGGGAAAAGACGTCTACCTACAGATTGACAAGGACATGAACCTAAAATACAGCCTGTCACCAGACACAGAGTTCATCTCCATCAAATCACTGACCTTGGGGAAGGTCACAGTTGACACTATGGATGAGGAAGTGATGCAGGCAGGATCTAAGGGCTTCATTGGCTGCCTGTCCTCAGTCCAGTTCAATCACATGGCTCCACTGAAGGCAGCGCTACTGAACCGTGCCAGCTCATTGGTCAGCGTACGGGGTCACTTGGTGGAGTCTAACTGTGGTGCGCTGGCTGACTCAACAATATTTCACTCTCAATCAGATCATTCAGAGACAGTCGGCAGAGGCAGGGGGCCATTAAGGAACGCTTCACAAAGCAACTATGCGGTAATTGGAGGTGTGGTGTCAGCAGTAGTCTTCATCAGTCTGTGTGTAGTGGCGGTGATGACCCGTTTCCTGTACCAGCACCGGCAGGCCCGGAGAGACGCCAGCATCAAGGAGAAGGAGCACCGGACTAACCTGGAAACAGCCTACCGGAGAGAAGCAGCCTACCGTGCAGAACCAGCCTACCGGACAGAGTTCCACCTCCATGACAGTCATAGCTCCACCCTCAATGACAACAGGGAGTACTACATCTGAACACCTGTGTCCCAGTCCCCTGGTCATCAGGGAAGGCCTCTCCTCTGAAAGTGGATTGGGAGGTGGAGATGTCACTGCAGAATTCCGGACAAGAAAATGGCCAAGAGTCCGAGCCCAGAACCCTTCTCCAGGGATTCTGCTCGGGAATTTGCCCACTGTCCGATTATTACAAAAcatgtatgtagtggactacaCGTTTAGCAGGTGTTTAGGGCTGTAGGTGTATCATGTGGTCGGTAAAACTGTCAGACAATATGGAGCGAATATGCAGGTGTGTTTTCGGAACAATCTCTCAACCAGCAGAGGAAAAGACCGAGACAAAGAAGGAAAGGAACCATGAGAACATTGAATGTCACCTGTCACACCGTCTGAATGTGTCGTACAAACTCCTGAAGACATCATTCTTCTTGTGACCCCCAATATTCTTCAAGATGTTCCACATCGTTCTGTGGAACGTCCTAAATGACATCTGAAAGATGTAGGTCAAGCATGTAAGTGAACCGTGAACTCTGCAGTGTGGCAATGACCGAACATTGAAATGAGAGAATGAAAGAATGAAGGACTTTACTGCCTTCTGTTAGAGTGCCTCTTCATGTTGTTTTAACCTCCTTTTTCTAAACCCTTTAGATCTTTGTTTAAATTAATTAGTGTTCATTTGTGTTTCCTTTATGTGCTAAGGGAATCATAGATCTGAATATGAACCACCTGTACTGTAATCATCATCTGTTCAAGTCTATAACAAATGGATGGTGTAATTCGGTGTATTACACAATGCTGTAATTTATCTAAGTAATGTTTCAAAGATGGATAATGCTCAAAGGTGAAACATTTTGCTGTAAAGTAGAAAGATGAGTATGTTCCGCCAGGTAAAGTCACTGATGTATATGtttcacacaacaacaacaaaaagactaAACATAACAGCCTGATAGGACCAGATCCTATCCTTTTAGAGAAATGCCTGTGACTGGAATTTACCTTAACACATCTGCCATTTTAATCAATGTCTGGTTGTGATAAAGTTCAAGTCACAAAGGTGTGTATGAAGAGAGGATCTCTAATCAGATTTTTCAGATTATAACAATATTTGAAATTTATTTACCTTAACTTCTTTGTTGTGTATAGTTGCAGTTGTACAGATATATTGTATAGATGTATATTTATTAATAAATTGAAGACTTTAT

Function

NR:

description
contactin-associated protein-like 5

GO: NA

KEGG:

id description
K24338 CNTNAP5; contactin associated protein-like 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959343.1 True 5288 mRNA 0.52 24 41798454 41899740

Neighbor

gene id symbol gene type direction distance location
LOC110502131 LOC106582415 coding downstream 31276 41764963 ~ 41767178 (-)
LOC110501888 LOC106582420 coding downstream 54630 41668896 ~ 41743824 (-)
LOC110501887 LOC106582419 coding downstream 173658 41622821 ~ 41624796 (-)
LOC110502151 arl4c coding downstream 185318 41612562 ~ 41613136 (-)
LOC110501886 rhg15 coding downstream 274690 41447899 ~ 41523764 (-)
LOC110501896 LOC106582434 coding upstream 692478 42592218 ~ 42603449 (-)
LOC110502155 psd12 coding upstream 704258 42603998 ~ 42605768 (-)
LOC110501897 LOC106582436 coding upstream 840879 42740619 ~ 42748577 (-)
LOC110501898 LOC106582438 coding upstream 870513 42770253 ~ 42797492 (-)
LOC110501899 LOC106582439 coding upstream 901280 42801020 ~ 42823612 (-)
G1811279 NA non-coding downstream 5802 41792434 ~ 41792652 (-)
G1811240 NA non-coding downstream 33626 41764627 ~ 41764828 (-)
G1811169 NA non-coding downstream 152188 41646002 ~ 41646266 (-)
G1811165 NA non-coding downstream 155462 41642769 ~ 41642992 (-)
G1811025 NA non-coding downstream 207956 41589230 ~ 41590498 (-)
G1811439 NA non-coding upstream 11078 41910818 ~ 41911038 (-)
G1811529 NA non-coding upstream 75604 41975344 ~ 41976554 (-)
G1811531 NA non-coding upstream 85392 41985132 ~ 41985474 (-)
G1811533 NA non-coding upstream 90559 41990299 ~ 41990611 (-)
G1811555 NA non-coding upstream 112037 42011777 ~ 42011996 (-)
G1811042 NA other downstream 193223 41604974 ~ 41605231 (-)
LOC110501878 LOC106582406 other downstream 985067 40736648 ~ 40813437 (-)
G1808299 NA other downstream 2853924 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 3186167 38520872 ~ 38726596 (-)
G1812079 LOC106582433 other upstream 487082 42386822 ~ 42389273 (-)
G1812404 NA other upstream 777517 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 2610667 44473683 ~ 44553607 (-)
G1814480 NA other upstream 2773707 44673447 ~ 44673888 (-)

Expression


Co-expression Network