LOC110502155 (psd12)


Basic Information

Item Value
gene id LOC110502155
gene name psd12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42603998 ~ 42605768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502155
GTTGAAGTTAGAAAAAAGCTCTTAGCACTTAGCAGACATTTCACTTGTCAATTCGCCGTAGTATTCAACTTACGATGTCGGAAAACATGTCAGCAGAGGTAGAGCGATCAGAAAGATCAGATGGCAAGCTTGTGAAGATGGAGATTGACTACAGTTCAACTGTAGATACAAGTCTACCGGAGTGTGCCAAAATGGCAAAAGAAGGTAGGTTGCAGGAGGCCGTTGAAAGCCTCTTGTCGCTGGAGATGCAAACAAGAACGGCTTCTGACATGGTGTCAACCTCCAGAATCCTGGTGGCCGTTGTGCAGATGTTCTATGAAGCGAAGGACATGGATGCCCTGAATGAAAACATCATGCTGCTCTCTAAAAGGAGGAGTCAGCTCAAAGGGGCTGTTGCTAAGATGGTGCAATAATGTTACAAGTATGTAGATACCGTGACCGACCTGACCGTTAAACTGAGACTCATTGACACACTACGCACAGTGACCGCTGGAAAGATCTATGTGGAGATTGAGCGAGCCAGGCTGACAAAAACAGTGGCAAACATCAAGGAGCAGCATGGCGAGGTCAAAGAGGCCGCAGCAATCCTCCAAGAGCTGCAGGTGGAGACATACGGCTCcatggagaagaaagagaaggtgGAGTTTATCTTGGAGCAAATGAGACTGTGCATCGCTGTCAAGGACTACATCTGCTCCCAGATCATCAGCAAGAAGATCAACACCAAGTTCTTTACAGAGGATGGCCCCGAGGAGTCTAAGCTGAAGTATTACAATCTGATGATCCAAGTGGACCCGCACGAGGGATCCTACTTGTCCATGTGCAAACACTACTGTGCCATCTATGATACCCCCTGCATTCTGGAGGATAGCTCCAAATGGCAACAGGCCCTGAAAAGTGTTGTTCTGTATGTGATACTGGCTCCCTACGACAACGAGCAGTTAGACCTGGTGCACAGAATCAACGAAGACAATAAATTGGAAGAAATACCCAAATACAAGGACCTCCTGAAGCAGTTCACCACCATGGAGCTAATGCGTTGGGCCTCCCTGGTGGAGGATTATGGGGAGGAGCTGAGGGAGGGCAGCCCGGCCACCGACGTATTCAACTTCTCAGAGGAGGGCGAGAAGAGGTGGAAGGACCTCAAGAATAGAGTGGTGGAGCACAATATAAGAATTATGGCCAAATATTACACAAGAATCACAATGAAGAGGATGGCTGGCCTCCTGGACCTCTCCAACCTGGTGGTGAACAAGACCATCTACGCCAAGGTGGACAGGCTAGCCGGCATCATCAACTTCCAGAGGCCGAAGGACCCCAACGGACCTGCCCAACGACTGGTCCCACAAACTGAACTCCCTCATGTCCCTGGTCAACAAAACCACACATCTCATCGCCAAAGAGGAGATGATACACAACCTGCAGTGATGAGGACCGAGTGCATTGTTTTCATAAAAAAATCTAATGTTCTTCTGAATTTATATTGATGAATGAACCATTTACAATAAACAAGTCTTACATGTTCTTATATGTTGTTACTATCTCTTGTCCCACTGATGTAATGTAAATTACATTGTTTAGAGTGGTCTCCCAATTGTATCTACTACAACAATCTGTACTTTGTTCTAGAACCTAGACCACAGAGGGGCATACACTGTTAATGTTTTCTCTCCTGTTCCAACTCTCTTTTTCATGTAACCGTCATAAGGGATTTAGTGTTAGAGCATTTGCGTGCAACTTGCTGTATTAAAAcatttactgtaaaaaaaaa
>TU2073345
TACTGTGCCATCTATGATACCCCCTGCATTCTGGAGGATAGCTCCAAATGGCAACAGGCCCTGAAAAGTGTTGTTCTGTATGTGATACTGGCTCCCTACGACAACGAGCAGTTAGACCTGGTGCACAGAATCAACGAAGACAATAAATTGGAAGAAATACCCAAATACAAGGACCTCCTGAAGCAGTTCACCACCATGGAGCTAATGCGTTGGGCCTCCCTGGTGGAGGATTATGG
>TU2073346
CGAGGAGTCTAAGCTGAAGTATTACAATCTGATGATCCAAGTGGACCCGCACGAGGGATCCTACTTGTCCATGTGCAAACACTACTGTGCCATCTATGATACCCCCTGCATTCTGGAGGATAGCTCCAAATGGCAACAGGCCCTGAAAAGTGTTGTTCTGTATGTGATACTGGCTCCCTACGACAACGAGCAGTTAGACCTGGTGCACAGAATCAACGAAGACAATAAATTGGAAGAAATACCCAAATACAAGGACCTCCTGAAGCAGTTCACCACCATGGAGCTAATGCGTTGGGCCTCCCTGGTGGAGGATTATGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502155 False 1771 mRNA 0.48 1 42603998 42605768
TU2073345 False 236 lncRNA 0.48 1 42604703 42604938
TU2073346 True 318 TUCP 0.48 1 42604703 42605020

Neighbor

gene id symbol gene type direction distance location
LOC110501896 LOC106582434 coding downstream 549 42592218 ~ 42603449 (-)
LOC110502152 LOC106582422 coding downstream 704258 41798454 ~ 41899740 (-)
LOC110502131 LOC106582415 coding downstream 836820 41764963 ~ 41767178 (-)
LOC110501888 LOC106582420 coding downstream 860174 41668896 ~ 41743824 (-)
LOC110501887 LOC106582419 coding downstream 979202 41622821 ~ 41624796 (-)
LOC110501897 LOC106582436 coding upstream 134851 42740619 ~ 42748577 (-)
LOC110501898 LOC106582438 coding upstream 164485 42770253 ~ 42797492 (-)
LOC110501899 LOC106582439 coding upstream 195252 42801020 ~ 42823612 (-)
LOC110501902 LOC106582441 coding upstream 444636 43050404 ~ 43056474 (-)
LOC110502158 LOC100137092 coding upstream 453781 43059549 ~ 43067135 (-)
G1812346 NA non-coding downstream 12864 42589367 ~ 42591134 (-)
G1812344 NA non-coding downstream 15443 42588303 ~ 42588555 (-)
G1812340 NA non-coding downstream 20562 42583067 ~ 42583436 (-)
G1812334 NA non-coding downstream 32143 42568217 ~ 42571855 (-)
G1812279 NA non-coding downstream 123536 42480247 ~ 42480462 (-)
G1812352 NA non-coding upstream 1823 42607591 ~ 42608500 (-)
G1812395 NA non-coding upstream 55810 42661578 ~ 42661930 (-)
G1812491 NA non-coding upstream 82442 42688210 ~ 42688979 (-)
G1812495 NA non-coding upstream 90454 42696222 ~ 42696512 (-)
G1812500 NA non-coding upstream 96962 42702730 ~ 42703286 (-)
G1812079 LOC106582433 other downstream 214725 42386822 ~ 42389273 (-)
G1811042 NA other downstream 998767 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 1138351 41447899 ~ 41523764 (-)
LOC110501878 LOC106582406 other downstream 1790611 40736648 ~ 40813437 (-)
G1808299 NA other downstream 3659468 38944136 ~ 38944530 (-)
G1812404 NA other upstream 71489 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 1904639 44473683 ~ 44553607 (-)
G1814480 NA other upstream 2067679 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 3232982 45838750 ~ 45840982 (-)
G1816841 NA other upstream 4619783 47225551 ~ 47226646 (-)

Expression


Co-expression Network