LOC110501903 (LOC106582442)


Basic Information

Item Value
gene id LOC110501903
gene name LOC106582442
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43099332 ~ 43101649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579759.2
AGTTATCAACCATTTGAGTAAACGCTGGATTCAAGTGCTGAGTGGTGGTTAACAGTCTGGCGATAGTAGCAAAACAAGATAAGAACTTCGCTAGGCATATTGCCTTCTCTCTTCTATGCAATATTGATTTTACTCGTCGGACATCAACATGCATCAGAAAACATAACTTTTACTGAGTTTCTCATCAGGACGCAGCGCATTGCTCTTTTCCAAACGGATATCTTACAACGGTGTGATGAAGCACTGAGATTTTACACCATAAGTACTTTGTACCAACATGTCTAAACCAATGGATCACGTAAAACGACCGATGAATGCCTTCATGGTTTGGTCCAGAGCGCAGAGAAGAAAAATGGCTCAGGAGAACCCAAAAATGCACAACTCCGAAATCAGCAAAAGATTGGGAGCGGAGTGGAAACTTCTCACTGAGTCGGAGAAAAGGCCATTCATTGACGAAGCTAAACGACTGAGAGCCATGCACATGAAGGAGCACCCTGACTATAAATACAGACCTAGGCGAAAGCCAAAGACTCTGATGAAAAAAGACAAGTTTGCCTTCCCAGTGCCCTACAATCTTGGGGAGCACGACGCGCTTAAAGTTAGCGGTTTATCTCATGGAGCACTTTCCGAACACCTATTAGGGAACCCCGACAAGGCGGCAGCGGCGGCCGCAGCAGCGAGAGTCTTTTTCAACCCGTCCATGTCCACGAACCCCTATTCGTTTTTTGAGCTCGGATCGAAGATGTCAGAGCTATCCTCGCCCTCGTTTCCTTACCCATCTCTGGGCTACCCTGGTGGCACGGCTTTCTCTGGAACTGGCGGTGTCGGTGGAactcacacccacactcactctCATCCAGCCCCGGGCAACCCAGGCTACATGATCCCCTGTAACTGTACGGGCTGGCCCTCTGCGGGTCTCCAGACACCGTTAGCCTACATCCTACTCCCCGGGATGGGCAAACCTCAACTTGACTACCCTGCATATGCAGCGGCATTATGATAGCCTATTGGACTTAGAAGAAGTTTAAATGTGAAAAAATATTCATGCAAGAGTTTATTATGCATGCACAAACTTGTACATGTGATAAAGTGCTCGTCGTCTCAGATATCACATGTGTATGTATATTGATTAATGCCTTTATCTAAGGTAGGGCCTAATGCTTATTTAGAGAACTCACGAAACTAATATTCATCTGTCAAATCCCAGAGGGACAGAACAAAAGGATTGCAGGAATACAGAGAGCAAAGGGCCCTTGTCAATGTGAATTCTAATTTGAAAGGCACCATGTCTGTTGCTAAAGCACCTGCTTTACTGGCTTGTTATCAAGTAGGCAGTTTACTACATCACACAACAAATCAGATATAAACATGAACTGGTCATACTTATCTTCATATATTTTATCTGATAATTAAATATTGTTTAAGAAATATAAATCACTTGCTTTTATATGATTTATATTGTTGGTCAAGAAGGTTTGTTCATTTCTTGTGCTTCTGGCTACGCTCGTGTTGCTTTATTGTTTCAATCAGAACGGCATAAGCCTGTAAATGTGTACAGCTAGCGTAAATGGTGGTAATATTTAATTTGCCATTTGGCTAGTATTTGAGATGTGGTCTGGAACTGACTGGGTGGTTTGGCTCAAAATCCAGTTGATATTTTAAGTTTTCAAACACTGTTTTATAGATGTCTGTAATATTTATTGTTTAGTGGGAATCATTATGCTGACCCGGTTGATTGAACAGTGGACATACCTTGTCCTGTAACATTTGCACAGGAAATATTAAGTGCTTATGGGATGTAATTTATTTAAAGGAATCACACTGCCAAGTATGAAGAGcctaaaagttttttttaaattcgaCAACAATCGGTATCCTTTCTTTCAACATTGGCAATTCACCAAATTGTCATTTATTATTTTTTGGTTTCTTGAGACCTTCGCATTTATGTGCGTTAGGTGCAGCACTCGTTTTTACTAACTCTTAATTAATTAAGTTGTATGTTTTGTGTTTTATTTAAACACCACTTACATGTACTTTAAACTCGTAAATGCTATTATGTTCATTTGTTGAACAAAGGGTTATAATAAAGCTATTGCGGACAAACA

Function

NR:

description
transcription factor Sox-21-B-like

GO: NA

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579759.2 True 2111 mRNA 0.41 2 43099332 43101649

Neighbor

gene id symbol gene type direction distance location
LOC110502158 LOC100137092 coding downstream 32197 43059549 ~ 43067135 (-)
LOC110501902 LOC106582441 coding downstream 42858 43050404 ~ 43056474 (-)
LOC110501899 LOC106582439 coding downstream 275720 42801020 ~ 42823612 (-)
LOC110501898 LOC106582438 coding downstream 301840 42770253 ~ 42797492 (-)
LOC110501897 LOC106582436 coding downstream 350755 42740619 ~ 42748577 (-)
LOC110502159 NA coding upstream 52138 43153787 ~ 43159661 (-)
LOC118943590 NA coding upstream 391636 43493285 ~ 43498392 (-)
LOC110502160 LOC106576908 coding upstream 484310 43585959 ~ 43587743 (-)
LOC110502161 LOC106582431 coding upstream 509900 43611549 ~ 43612567 (-)
LOC118943640 LOC106582482 coding upstream 566254 43667903 ~ 43669453 (-)
G1812886 NA non-coding downstream 464 43098600 ~ 43098868 (-)
G1812869 NA non-coding downstream 8038 43090743 ~ 43091294 (-)
G1812843 NA non-coding downstream 30522 43068597 ~ 43068810 (-)
G1812805 NA non-coding downstream 59616 43036738 ~ 43039716 (-)
G1812803 NA non-coding downstream 64531 43034485 ~ 43034801 (-)
G1812894 NA non-coding upstream 6339 43107988 ~ 43108296 (-)
G1812901 NA non-coding upstream 10451 43112100 ~ 43112330 (-)
G1812965 NA non-coding upstream 56476 43158125 ~ 43158930 (-)
G1812969 NA non-coding upstream 60501 43162150 ~ 43162459 (-)
G1812976 NA non-coding upstream 69919 43171568 ~ 43171781 (-)
G1812404 NA other downstream 421572 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 494312 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 710059 42386822 ~ 42389273 (-)
G1811042 NA other downstream 1494101 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 1633685 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 1408758 44473683 ~ 44553607 (-)
G1814480 NA other upstream 1571798 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2737101 45838750 ~ 45840982 (-)
G1816841 NA other upstream 4123902 47225551 ~ 47226646 (-)
G1816929 NA other upstream 4299473 47400985 ~ 47402047 (-)

Expression


Co-expression Network