LOC118943593 (LOC106582432)


Basic Information

Item Value
gene id LOC118943593
gene name LOC106582432
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43767470 ~ 43768589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959081.1
ATGGAGGAACATGAAGATATTCAATACTGTTTTCAAGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGATATCTATCTACATAACACTGTACATCTTCTTCTCAGTGATTTCAGCAGTTACAGTATTTTTGAACGTACTGGTGATCATCTCCATCTTTCACTTCAAGCAACTCCACACTCCAACCAACCTGCTCATCCTCGCTCTGGCTGCATCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAATGACTGTAGCAATAATTGAATCATGCTGGGGTTTTGGGAAATATTTCTGTGCGTTTCTTCTCTACATTACTTGTTTATGTACTTCTTTATCTCTGGGCAGTTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTTATCCCTTATTGTACCActctaaaataacaataacaagaatGATGTGTTGTATATCAATTACCTGGTGTTGTTGTACCATTTACAATGCTGCTATTATAAAAGACATTGTAAATGTACAGGTACCCAGTcggtgtttgaatgaatgttttatTGTCGTAGGAATAACCTGGGGAAATATAATTGactttgtatttacaatggttgtCCCATGCTCTATTATTATAACACTTTATTTGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAATGTGTCTGGTGTTAAAACTGTACAGGCAAGTAAGTCTGAGAGAAAAGCAGCAAAAACTCTGTCTATTGTTGTTTTCAACTATTTCATTTGTTGGATTCCATTTCTATTTTCTTTTTTCTTTGTTTCTTTTTTAAGTGACAATTTACTATCATTCATCCTCAGCTTTCTGCCACTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCATGGTTCAAAGTGACTGCTAAACATATTTTAACTCTGAAGTTAAGGTGTTCGTAGTTCCTGTATTTGTATTtctaagtttaaaaaaaaaggtttgaCATAGTTTTGTTATACAATTGTTCTTTCATGTAACAATACACTGACAATACATAGATGAATGTGGTGTTGATACAGAATGATTTGGCTGGATTGGATTGGAATGACTTGAATAAAG

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959081.1 True 1120 mRNA 0.35 1 43767470 43768589

Neighbor

gene id symbol gene type direction distance location
LOC110502134 LOC106582432 coding downstream 33801 43732486 ~ 43733669 (-)
LOC118943592 LOC106582431 coding downstream 76632 43689511 ~ 43692662 (-)
LOC118943591 LOC106582431 coding downstream 85506 43680669 ~ 43681964 (-)
LOC118943640 LOC106582482 coding downstream 98017 43667903 ~ 43669453 (-)
LOC110502161 LOC106582431 coding downstream 154903 43611549 ~ 43612567 (-)
LOC118936360 LOC106582432 coding upstream 30987 43799576 ~ 43800754 (-)
LOC110502164 LOC106582432 coding upstream 117692 43886281 ~ 43887278 (-)
LOC110502166 LOC106576908 coding upstream 185062 43953651 ~ 43955514 (-)
LOC118943594 LOC106576908 coding upstream 238636 44007225 ~ 44009175 (-)
LOC118936581 NA coding upstream 245824 44014413 ~ 44018572 (-)
G1814021 NA non-coding downstream 127242 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 189632 43577242 ~ 43577838 (-)
G1813999 LOC106582448 non-coding downstream 194553 43570568 ~ 43572917 (-)
G1813938 NA non-coding downstream 217584 43546550 ~ 43549886 (-)
G1814092 NA non-coding upstream 93994 43862583 ~ 43862961 (-)
G1814114 NA non-coding upstream 140993 43909582 ~ 43944371 (-)
G1814187 NA non-coding upstream 281134 44049723 ~ 44050244 (-)
G1814207 NA non-coding upstream 325795 44094384 ~ 44094911 (-)
G1812404 NA other downstream 1089710 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1162450 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1378197 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2162239 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2301823 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 741818 44473683 ~ 44553607 (-)
G1814480 NA other upstream 904858 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2070161 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3456962 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3632533 47400985 ~ 47402047 (-)

Expression


Co-expression Network