LOC110502166 (LOC106576908)


Basic Information

Item Value
gene id LOC110502166
gene name LOC106576908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43953651 ~ 43955514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580023.2
CAGAGAGACTCCGGGGAGGGGAGTGGTTGTCAGCTATTCAGGGATAAATAGAGAGTCAGAACTCAGAGTTTGTCAGAAGGCTGAACTTACAGGGTCACACACAGGACCAAGCAGGAGCAGGACCTCAGCATTTCTACCCTTTATTACAAATGGagaaaaacaaagatgttcaaTACTGTTTTCAAGACAGAAACTCTTCTTGCAGAATGGAATTGCTATCGACAACAATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGTAGTTACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTACAACCAACCTGctcatcctctctctggctgtgtcagATCTCCTGGTGGGACTGATTGTGATACCAGTAACGACTATAGCAATAATGGAATCATGCTGGGGTTTTGGggaatatttctgtgtgttttatTTCTACATTGCTTGTTTATGTACTTCTTTATCTCTGGGAAATTTGGTATTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatGATGTGTTGTATATCATTTACCTGGTGTTGTTGTATCATATACCGTGCTGCTATTATAAAAAACTTAGTAAATGTACAGGTACCCAGTaggtgtttgaatgaatgttttatTGTAGAGGAGTTACATTGGGTTAATATCATTGCccttgtatttacaatggttgtCCCGTGCTCTATTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGATATTTTCAAAAGAGGCTGCCTGTGTGTCTGGTGTTAAAACTGGACAGGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTTGCTATTGTTGTTTTCAACTATCTAATTTGTTGGATTCCATTTTTGTtcataaatatgttttttttttcaagtgACAATTTATCATTTATCATCGGCTTTCTGCCACTTGTTAATTCCTTAATTAATCCAATAATTTATGCTTTCTTTTATCCTTGGTTCAAAGTGACAGCTAAACATATTTTAACTCTGAAGTTAAGGTATTCATAgttcctatatttatatatattttttttaatctacaaGCATTGGTTGGATATAGTTATGTTAAACAATTGCTCTAATTGCTTCTTTCATGTAACAATACACTGACATTACTTACAGTATCTCAGTATTGTCATTATGGATACATGTGGTTTTGATACAGAATAATTTGGCTGGATTGGATTGGAATGACTTGGAGAAGGCATTAGAAGGAACAAGCTTGTTTTACAAAAGACATTGTAGTCATTTTGGGTAAAAAATTCCAATACCAAAATCTGTAGTTGTTCCATGTTATTTAATGATAAATAGTATGCAATTATTCTAAAAGTACATTTGGAGGTGCCATATGTTGTTTATCATTGTCCTCTAGTTACTGCATTGGGACACAATGCCTTCAACAAGTGTAGTaaagggtgtggtatatggcctatAGACCACGGCTAGGGGTTGTTTTTGTGCACGATgcaacacagagtgcctggatacagcccttagccgtggtaaattggccatataccactaacccccaaggtgccttattgtttTTATAAACCGGTTGCCAACACAGCAAGGAAAGGAAGACACATCTAAATTGAAAATGTTGTTTTTAAGAAATAAattcataataaatacattctgccAGAAAAACTAGTTCAGACAAAAGTTGTGTTGCTAGACTGGTTGCTAAGTAACATAGCTAcaggctagctaacattaaatgTATGCAAAAACAGAGCATTAGCGCTACTTCTACAGTGACCAAC

Function

NR:

description
trace amine-associated receptor 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580023.2 True 1864 mRNA 0.36 1 43953651 43955514

Neighbor

gene id symbol gene type direction distance location
LOC110502164 LOC106582432 coding downstream 66373 43886281 ~ 43887278 (-)
LOC118936360 LOC106582432 coding downstream 152897 43799576 ~ 43800754 (-)
LOC118943593 LOC106582432 coding downstream 185062 43767470 ~ 43768589 (-)
LOC110502134 LOC106582432 coding downstream 219982 43732486 ~ 43733669 (-)
LOC118943592 LOC106582431 coding downstream 262813 43689511 ~ 43692662 (-)
LOC118943594 LOC106576908 coding upstream 51711 44007225 ~ 44009175 (-)
LOC118936581 NA coding upstream 58899 44014413 ~ 44018572 (-)
LOC110501913 LOC106582458 coding upstream 399649 44355163 ~ 44369009 (-)
LOC110501914 LOC106582459 coding upstream 421068 44376582 ~ 44387701 (-)
LOC110502171 LOC106582464 coding upstream 519204 44473683 ~ 44553607 (-)
G1814114 NA non-coding downstream 9280 43909582 ~ 43944371 (-)
G1814092 NA non-coding downstream 90690 43862583 ~ 43862961 (-)
G1814021 NA non-coding downstream 313423 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 375813 43577242 ~ 43577838 (-)
G1814187 NA non-coding upstream 94209 44049723 ~ 44050244 (-)
G1814207 NA non-coding upstream 138870 44094384 ~ 44094911 (-)
G1814210 NA non-coding upstream 159817 44115331 ~ 44115614 (-)
G1814228 NA non-coding upstream 201247 44156761 ~ 44191383 (-)
G1812404 NA other downstream 1275891 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1348631 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1564378 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2348420 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2488004 41447899 ~ 41523764 (-)
G1814480 NA other upstream 717933 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1883236 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3270037 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3445608 47400985 ~ 47402047 (-)

Expression


Co-expression Network