LOC118943594 (LOC106576908)


Basic Information

Item Value
gene id LOC118943594
gene name LOC106576908
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44007225 ~ 44009175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959083.1
ATGCTAGCAGTTACAGTATTTTTGAACCTACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTACAACcaacctgctcctcctctctctggctgtagcAGATCTCCTGGTGGGACTGATTGTGATACCAGTAACGACTGTAGCAATAATGGAATCATGCTGGGGTTTTGGgcaatatttctgtgtgtttcatATATATATGGCTTGTTTATGTACCTCTTTATCTCTGGGCAGTTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatGATATGTTGTATATCCATTAGCTGGTGGTGTTGTACCATATACAATGCTGTTATTATAACAGACATTGTAAATGTGCAGGTACCCAGTAGGTGTTTGAAAGAATGTTTTATTGTTGAAGGGTATATGTGGGGTAAAATAATGGACATTGTAATTACAATGGTTGTCCCGTGCTCTATTATTATAACACTTTATATGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGGCTGCCAGAGTGTCTGGTGTTAAAACTGTACAAGCAAATAAGTCTGAGAGAAAAGCAGCAAAGACTCTGTCTATTGTTGTTTTCAACTATTTAATTTGTTGGATTCCATCTCTATTCGgtttcttttttttgtcttttttaaGTGACAATTTATCACTTTTCATCCGTTTTCTGCCACTTGTTAATTCCTTAATAAATCCAATAATTTATGCTTTATTTTATCCATGGTTCAAAGTGACAGCTAAACATATTTTATCTCTGAAGGTATGGCATTCATAGTACTATGTTTTTATTCCTAAATTTGACAAACGTAGGTTTGATATCATTACGTTATACAATTGTTATAATTGCTTCTTTCTTGTAACAATACTGACATTACTTATCTCAGTGTTGTCATCATAAATACATGTGGTGTTGATACAGAATGATTTGTCTGGATTGGATTGGAATGACTTGGAGAAGGCATAAGAAGGAATAAGCTTGTTTTATAAAAGACATTGTAGTCATTGTGGATTGTGTACTCCAAATACCTAAGTCTGTGGTTGTTCCATGTTACTTAATGATAAATAGTAAATATTCTAAAACTACATTCTGAGGACGTCATGAGTCATTATGTTTAACatcaccctctagtggcccaATTGTGACACAATGCCTTCATCAAGTGTAGTGAAGTTGAAATGAAAGACACTGCATGATATCAGATAACTTCCAGGTCTATCTCAATGGTGTATTGTGTAAGTAGTTTAGGGTCAAATGCAAGAATATGCAATTATGTGTAACACTTTATAATTTTCAGTAATAACAAATGTGTAAATAAACCATTTATTTGTAAGGCATTTACAGTTTGGTCACCAATTGTTAAATGTTAATCAGCTTTGTATTCTCACATTTATAAATAACTACAATATGCAGTAATGATTAAACAACAGTGCAGGAGACCACAGTAGACACTTCAACCTCAACATACTGGGTAtaaacactaccactactct

Function

NR:

description
trace amine-associated receptor 13c-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959083.1 True 1565 mRNA 0.35 2 44007225 44009175

Neighbor

gene id symbol gene type direction distance location
LOC110502166 LOC106576908 coding downstream 51711 43953651 ~ 43955514 (-)
LOC110502164 LOC106582432 coding downstream 119947 43886281 ~ 43887278 (-)
LOC118936360 LOC106582432 coding downstream 206471 43799576 ~ 43800754 (-)
LOC118943593 LOC106582432 coding downstream 238636 43767470 ~ 43768589 (-)
LOC110502134 LOC106582432 coding downstream 273556 43732486 ~ 43733669 (-)
LOC118936581 NA coding upstream 5238 44014413 ~ 44018572 (-)
LOC110501913 LOC106582458 coding upstream 345988 44355163 ~ 44369009 (-)
LOC110501914 LOC106582459 coding upstream 367407 44376582 ~ 44387701 (-)
LOC110502171 LOC106582464 coding upstream 465543 44473683 ~ 44553607 (-)
rbm45 LOC106582466 coding upstream 548956 44558131 ~ 44562475 (-)
G1814114 NA non-coding downstream 62854 43909582 ~ 43944371 (-)
G1814092 NA non-coding downstream 144264 43862583 ~ 43862961 (-)
LOC118943592 LOC106582431 non-coding downstream 314563 43689511 ~ 43692662 (-)
G1814021 NA non-coding downstream 366997 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 429387 43577242 ~ 43577838 (-)
G1814187 NA non-coding upstream 40548 44049723 ~ 44050244 (-)
G1814207 NA non-coding upstream 85209 44094384 ~ 44094911 (-)
G1814210 NA non-coding upstream 106156 44115331 ~ 44115614 (-)
G1814228 NA non-coding upstream 147586 44156761 ~ 44191383 (-)
G1812404 NA other downstream 1329465 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1402205 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1617952 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2401994 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2541578 41447899 ~ 41523764 (-)
G1814480 NA other upstream 664272 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1829575 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3216376 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3391947 47400985 ~ 47402047 (-)

Expression


Co-expression Network