LOC118936581


Basic Information

Item Value
gene id LOC118936581
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44014413 ~ 44018572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038841.1
CTAATATTTTTTTCAACATAAATTTTTGCGTCTGGGATTTTAGAACTATTTCATATAAACTCTGTGTTTCATATTGGCTTGAACCTGGCAAGCCATTTTGATAACTGCGCAAATCTCTCAGACATGGTAAATTGTATCAATATATTCACGTGTAATTACCTCCAAAATGAAATGCCAGTGGGACTTTCATAAAGAACTACACATCTTGTCGCAAAGTATGACGTCAAACCCTCAAGGCACAGTTCTCCACGCAAACTCCTCGACAAGTAGCCTAGCAAGAAACAGATATTATAGGCGTTTTAGTTTCTCGTGTGTATATCGCTTGCTACCTTAACGTCATTGAATTACTATAATTAATAAGTTAGCCTCTGCAGATAACTAGCTAACCTTAGGTCTCTACGTCGACCAGAAGCAAGGATGGTTCTGTGCTATGTAACGTGACCGGATTGTAACCACTACTCCAATAAGCACATGCACATTTTATCGTTTTCCAACCTCTAAGTGAGAGGCATCGCTAGAGCTGTGTGATAAGatGGACGGACCAGAAACCCAGTGACACTCGGGTCTGTAGCTGCCATTTTCCAGTGGGAAATGTCTTTCAGATGGACGGACCGGAAACCCAGTGACAACACTCGGGTCTGTAGCTGCCATTTTCcagtgggaaagagagatggcTCTGTATTTACCAGAGTAGGTAGTTCATCCATCATGGTGGATGAGGAAGATCCAGACTGTGTATTGGGAATCAAAAACAAACCAATAGGATTGAGTGTCCAAAAGGAGTGAATCCCTCAGGCTATCCGGTGCATAGACATCCTGTGTCAGTGTGATCTGGTTGTGGAGACGACAGCAGATCGGGCCTGTGGACAGACAGACAGGAGGCGTGACATGTGGAACATCAGGCACTCACCATGAGAAGCAGTGCATGATCAACACCAGCCTCAGCAAGGAGATCTTGTCATGGCTGTTGAAGGAGGGGGACCAAGGTGCaacgtgTTCCCAGatatgctgagcagttgttggctgcttgtccttcactctgcggtccaact
>TU2075413
CGGATTGTAACCACTACTCCAATAAGCACATGCACATTTTATCGTTTTCCAACCTCTAAGTGAGAGGCATCGCTAGAGCTGTGTGATAAGATGGACGGACCGGAAACCCAGTGACAACACTCGGGTCTGTAGCTGCCATTTTCcagtgggaaagagagatggcTCTGTATTTACCAGAGTAGGTAGTTCATCCATCATGGTGGATGAGGAAGATCCAGACTGTGTATTGGGAATCAAAAACAAACCAATAGGATTGAGTGTCCAAAAGGAGTGAATCCCTCAGGCTATCCGGTGCATAGACATCCTGTGTCAGTGTGATCTGGTTGTGGAGACGACAGCAGATCGGGCCTGTGGACAGACAGACAGGAGGCGTGACATGTGGAACATCAGGCACTCACCATGAGAAGCAGTGCATGATCAACACCAGCCTCAGCAAGGAGATCTTGTCATGGCTGTTGAAGGAGGGGGACCAAGGTGCa
>TU2075414
CGGATTGTAACCACTACTCCAATAAGCACATGCACATTTTATCGTTTTCCAACCTCTAAGTGAGAGGCATCGCTAGAGCTGTGTGATAAGatGGACGGACCAGAAACCCAGTGACACTCGGGTCTGTAGCTGCCATTTTCCAGTGGGAAATGTCTTTCAGATGGACGGACCGGAAACCCAGTGACAACACTCGGGTCTGTAGCTGCCATTTTCcagtgggaaagagagatggcTCTGTATTTACCAGAGTAGGTAGTTCATCCATCATGGTGGATGAGGAAGATCCAGACTGTGTATTGGGAATCAAAAACAAACCAATAGGATTGAGTGTCCAAAAGGAGTGAATCCCTCAGGCTATCCGGTGCATAGACATCCTGTGTCAGTGTGATCTGGTTGTGGAGACGACAGCAGATCGGGCCTGTGGACAGACAGTTTTAGACAGGAGGCGTGACATGTGGAACATCAGGCACTCACCATGAGAAGCAGTGCATGATCAACACCAGCCTCAGCAAGGAGATCTTGTCATGGCTGTTGAAGGAGGGGGACCAAGGTGCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038841.1 False 1052 mRNA 0.45 5 44014413 44018572
TU2075413 False 479 lncRNA 0.49 4 44015684 44018130
TU2075414 True 555 lncRNA 0.49 4 44015684 44018130

Neighbor

gene id symbol gene type direction distance location
LOC118943594 LOC106576908 coding downstream 5238 44007225 ~ 44009175 (-)
LOC110502166 LOC106576908 coding downstream 58899 43953651 ~ 43955514 (-)
LOC110502164 LOC106582432 coding downstream 127135 43886281 ~ 43887278 (-)
LOC118936360 LOC106582432 coding downstream 213659 43799576 ~ 43800754 (-)
LOC118943593 LOC106582432 coding downstream 245824 43767470 ~ 43768589 (-)
LOC110501913 LOC106582458 coding upstream 336591 44355163 ~ 44369009 (-)
LOC110501914 LOC106582459 coding upstream 358010 44376582 ~ 44387701 (-)
LOC110502171 LOC106582464 coding upstream 456146 44473683 ~ 44553607 (-)
rbm45 LOC106582466 coding upstream 539559 44558131 ~ 44562475 (-)
LOC110501919 LOC106582468 coding upstream 579782 44598354 ~ 44632193 (-)
G1814114 NA non-coding downstream 70042 43909582 ~ 43944371 (-)
G1814092 NA non-coding downstream 151452 43862583 ~ 43862961 (-)
LOC118943592 LOC106582431 non-coding downstream 321751 43689511 ~ 43692662 (-)
G1814021 NA non-coding downstream 374185 43633497 ~ 43640228 (-)
G1814001 NA non-coding downstream 436575 43577242 ~ 43577838 (-)
G1814187 NA non-coding upstream 31151 44049723 ~ 44050244 (-)
G1814207 NA non-coding upstream 75812 44094384 ~ 44094911 (-)
G1814210 NA non-coding upstream 96759 44115331 ~ 44115614 (-)
G1814228 NA non-coding upstream 138189 44156761 ~ 44191383 (-)
G1814235 NA non-coding upstream 162845 44181417 ~ 44181785 (-)
G1812404 NA other downstream 1336653 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1409393 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1625140 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2409182 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2548766 41447899 ~ 41523764 (-)
G1814480 NA other upstream 654875 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1820178 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3206979 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3382550 47400985 ~ 47402047 (-)

Expression


Co-expression Network