LOC110501914 (LOC106582459)


Basic Information

Item Value
gene id LOC110501914
gene name LOC106582459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44376582 ~ 44387701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959387.1
ACGCGTCAGTGGACGCGCCTACTGATCGACAACACAACTCCTCCAATAAGTATTACGGCGTAACGGGTTTATGCACAGCACAGACTAACGAAAATACCCGAACAGGAACAATACCCAAACTCCAGTGATAAAATAGGGATGGAGTTTGGAATTTCAATGAAACATATCACCGAATGAGACAAATGGATAAGGACCAACCCAGCTGTATTTTACAATCTCTGTTCTAAAACAACTGGAGGAACTGTGACCGGGATAATTACAAGGACATTTGTGTCAAAGAAGTGCAAGGGCTTTCAGGACCTCTGCTTACAAATAGTAGGTAGTGTTGCAGCAATGGAAAAATCCACGGAGGACTACGACAATTACACCTACGATTATCTGGAGTACGGAGACTTCGAAGAAGAAAAAGCCCCAGACGGATACTCCCAGAAGGAGGCTATGCACATCATATCAGTCGTCATGTATAGTATTTCATTTGTGCTCGGTGTCACTGGAAATGGAACAGTCATATGGGTGTTGGCATTTAAAAGCAAACGGACAGTGAACAGTGTCTGGTTGCTGAACATGGCTATAGCAGATTTTGTGTTTGTGCTCTTTTTACCCTTCTCTATCGACTACGTCCTTCGAGACTTCCACTGGTGCTTTGGCCTGGTCATGTGTAAGCTAAACTCGTTTGTGTCTGTGATGAACATGTACGCCAGTGTGCTCTTTCTCACAATGCTCAGTCTAGACAGGTATGTCTCATTGATTCACCTTAGCTGGTCTCAGAGGTGTCGCAGTGTATGGCGAGCCTGGATCGTatgtggctgtgtgtggggggtgtcTGCTCTACTGAGCCTCCCTACCCTGATATTCCGTGACACTGTGAGTTACCGTGACCGGGTGATGTGCTTCAACAACTTTAATGTCCAGGATAGACATACAGCTGCTGTGAGACACATTACGTTGGTGGTCATCCGTACAGCAGTGGGCTTCTTACTGCCCTTCAGTGCTGTCTGTGTGACTGGAATTCTCCTGGCAATCAAAGTCCACCAGTCTGACGATTCTGTGAGCCTGTCTAGCTTTTCTAAGACCGTTTCAGCTGTCATTCTGGCCTTCTTTTTGTGCTGGGCACCATTCCATACCTTTAGTTTAATGGAGCTTTCCTTCAACTCATCACTGTACCTACATGCTGTTCTGAAGACAGGCTTTCCTCTTGCTACGAGCTTAGCCTATTTCAACAGCTGCGTCAACCCCTTCATCTACGTGCTGGTGGGTAAGAAGGTTCGCCAGCTCCTGAAACGCTCGTGTCTGGACATCACAAAGAGTTCTCTGCGGGAGCTCAACCAGTCCATCTCTGCAACTGAATTAGTGCCTGTAGCTGACATAAGAGCTCCATACATCAGTGCACCACAGGATCCCACAGAATCATCAACTGTTTGATTATACTGATCGAATCCCACAGTTACCTATAGCAGAAACCCGGCAGAAACACGGCAGAAACCCGGCAGAAACCCGGCAGAAACTGCCATTTGACCTAAAAGAACCAGCCTGACCATTCTTTTAGTCCAAATGTgacttattttatattttacttaGTGTAACATTTGTGCTAGTTGTTTGAGTTGGATACTTCCAAGTAGCAATTACTTTGAGTGCCAAGGTCTGTTTGAGTGCCAAGGTCTGCTTGAGTGCCCTCATAGGAAAACTTGAGTAAAGACATACACTAAAAGTATAACTTGCACAGGGGAAAATAAGCAACTTTATTTAATGATTTTAAAAATAAGTATCTGATCCTATTTACCCCGAAGACTAATAGGAAAGGAGGCCACCCTTCCCCACTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTAGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGCTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGAATGATTAGAAGCAGATCTACCATTTTCATAAACACTTTGCATTTAGATTTCGGTCATCAAACAAATCCAAGTTTAACCCTGACGGGAATTTAGTCCTTCTCTTTCTTGTTACGTTGAAAAGTTTCCCATTACAAGTTGATTTGCTGTTGTAGTGTACTCTGTTATTATATAGCTGCTGTACACATGAGACAAATTCTATTAGGCCGTTCTTTTTATGTTGTAATTATATTAAGCGTATAAATTAATCTCAAtgtttaaattacattttctaaTAATGTTCACATTGTCAATCactgtgtgtgattttgtttttGTGGGAATTTGAAATATATGAGGGAAATCTGGCATTAATTGTAATATACTTGAGTCAAAGGAATAAACAATGAATCCAGTCCCTTCTCTGTA
>XM_021579785.2
TGACGCGTCAGTGGACGCGCCTACTGATCGACAACACAACTCCTCCAATAAGTATTACGGCGTAACGGGTTTATGCACAGCACAGACTAACGAAAATACCCGAACAGGAACAATACCCAAACTCCAGTGATAAAATAGGGATGGAGTTTGGAATTTCAATGAAACATATCACCGAATGAGACAAATGGTAAAGTATTGGCAGTTGCTGTAGCCTAACTACGTTTACGCCGTTGAACTTCTAAAAGTTTAGATTTTTGGTGATTCCAACTCGGAGAGGATTGGCAGGACATAGTAACTTTCAGCGACTGGaagGATAAGGACCAACCCAGCTGTATTTTACAATCTCTGTTCTAAAACAACTGGAGGAACTGTGACCGGGATAATTACAAGGACATTTGTGTCAAAGAAGTGCAAGGGCTTTCAGGACCTCTGCTTACAAATAGTAGGTAGTGTTGCAGCAATGGAAAAATCCACGGAGGACTACGACAATTACACCTACGATTATCTGGAGTACGGAGACTTCGAAGAAGAAAAAGCCCCAGACGGATACTCCCAGAAGGAGGCTATGCACATCATATCAGTCGTCATGTATAGTATTTCATTTGTGCTCGGTGTCACTGGAAATGGAACAGTCATATGGGTGTTGGCATTTAAAAGCAAACGGACAGTGAACAGTGTCTGGTTGCTGAACATGGCTATAGCAGATTTTGTGTTTGTGCTCTTTTTACCCTTCTCTATCGACTACGTCCTTCGAGACTTCCACTGGTGCTTTGGCCTGGTCATGTGTAAGCTAAACTCGTTTGTGTCTGTGATGAACATGTACGCCAGTGTGCTCTTTCTCACAATGCTCAGTCTAGACAGGTATGTCTCATTGATTCACCTTAGCTGGTCTCAGAGGTGTCGCAGTGTATGGCGAGCCTGGATCGTatgtggctgtgtgtggggggtgtcTGCTCTACTGAGCCTCCCTACCCTGATATTCCGTGACACTGTGAGTTACCGTGACCGGGTGATGTGCTTCAACAACTTTAATGTCCAGGATAGACATACAGCTGCTGTGAGACACATTACGTTGGTGGTCATCCGTACAGCAGTGGGCTTCTTACTGCCCTTCAGTGCTGTCTGTGTGACTGGAATTCTCCTGGCAATCAAAGTCCACCAGTCTGACGATTCTGTGAGCCTGTCTAGCTTTTCTAAGACCGTTTCAGCTGTCATTCTGGCCTTCTTTTTGTGCTGGGCACCATTCCATACCTTTAGTTTAATGGAGCTTTCCTTCAACTCATCACTGTACCTACATGCTGTTCTGAAGACAGGCTTTCCTCTTGCTACGAGCTTAGCCTATTTCAACAGCTGCGTCAACCCCTTCATCTACGTGCTGGTGGGTAAGAAGGTTCGCCAGCTCCTGAAACGCTCGTGTCTGGACATCACAAAGAGTTCTCTGCGGGAGCTCAACCAGTCCATCTCTGCAACTGAATTAGTGCCTGTAGCTGACATAAGAGCTCCATACATCAGTGCACCACAGGATCCCACAGAATCATCAACTGTTTGATTATACTGATCGAATCCCACAGTTACCTATAGCAGAAACCCGGCAGAAACACGGCAGAAACCCGGCAGAAACCCGGCAGAAACTGCCATTTGACCTAAAAGAACCAGCCTGACCATTCTTTTAGTCCAAATGTgacttattttatattttacttaGTGTAACATTTGTGCTAGTTGTTTGAGTTGGATACTTCCAAGTAGCAATTACTTTGAGTGCCAAGGTCTGTTTGAGTGCCAAGGTCTGCTTGAGTGCCCTCATAGGAAAACTTGAGTAAAGACATACACTAAAAGTATAACTTGCACAGGGGAAAATAAGCAACTTTATTTAATGATTTTAAAAATAAGTATCTGATCCTATTTACCCCGAAGACTAATAGGAAAGGAGGCCACCCTTCCCCACTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTAGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGCTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGAATGATTAGAAGCAGATCTACCATTTTCATAAACACTTTGCATTTAGATTTCGGTCATCAAACAAATCCAAGTTTAACCCTGACGGGAATTTAGTCCTTCTCTTTCTTGTTACGTTGAAAAGTTTCCCATTACAAGTTGATTTGCTGTTGTAGTGTACTCTGTTATTATATAGCTGCTGTACACATGAGACAAATTCTATTAGGCCGTTCTTTTTATGTTGTAATTATATTAAGCGTATAAATTAATCTCAAtgtttaaattacattttctaaTAATGTTCACATTGTCAATCactgtgtgtgattttgtttttGTGGGAATTTGAAATATATGAGGGAAATCTGGCATTAATTGTAATATACTTGAGTCAAAGGAATAAACAATGAATCCAGTCCCTTCTCTGTA
>XM_021579786.2
TGACGCGTCAGTGGACGCGCCTACTGATCGACAACACAACTCCTCCAATAAGTATTACGGCGTAACGGGTTTATGCACAGCACAGACTAACGAAAATACCCGAACAGGAACAATACCCAAACTCCAGTGATAAAATAGGGATGGAGTTTGGAATTTCAATGAAACATATCACCGAATGAGACAAATGGTAAAGTATTGGCAGTTGCTGTAGCCTAACTACGTTTACGCCGTTGAACTTCTAAAAGTTTAGATTTTTGGTGATTCCAACTCGGAGAGGATTGGCAGGACATAGTAACTTTCAGCGACTGGaagGATAAGGACCAACCCAGCTGTATTTTACAATCTCTGTTCTAAAACAACTGGAGGAACTGTGACCGGGATAATTACAAGGACATTTGTGTCAAAGAAGTGCAAGGGCTTTCAGGTGAATAATCTATGAGGACCTCTGCTTACAAATAGTAGGTAGTGTTGCAGCAATGGAAAAATCCACGGAGGACTACGACAATTACACCTACGATTATCTGGAGTACGGAGACTTCGAAGAAGAAAAAGCCCCAGACGGATACTCCCAGAAGGAGGCTATGCACATCATATCAGTCGTCATGTATAGTATTTCATTTGTGCTCGGTGTCACTGGAAATGGAACAGTCATATGGGTGTTGGCATTTAAAAGCAAACGGACAGTGAACAGTGTCTGGTTGCTGAACATGGCTATAGCAGATTTTGTGTTTGTGCTCTTTTTACCCTTCTCTATCGACTACGTCCTTCGAGACTTCCACTGGTGCTTTGGCCTGGTCATGTGTAAGCTAAACTCGTTTGTGTCTGTGATGAACATGTACGCCAGTGTGCTCTTTCTCACAATGCTCAGTCTAGACAGGTATGTCTCATTGATTCACCTTAGCTGGTCTCAGAGGTGTCGCAGTGTATGGCGAGCCTGGATCGTatgtggctgtgtgtggggggtgtcTGCTCTACTGAGCCTCCCTACCCTGATATTCCGTGACACTGTGAGTTACCGTGACCGGGTGATGTGCTTCAACAACTTTAATGTCCAGGATAGACATACAGCTGCTGTGAGACACATTACGTTGGTGGTCATCCGTACAGCAGTGGGCTTCTTACTGCCCTTCAGTGCTGTCTGTGTGACTGGAATTCTCCTGGCAATCAAAGTCCACCAGTCTGACGATTCTGTGAGCCTGTCTAGCTTTTCTAAGACCGTTTCAGCTGTCATTCTGGCCTTCTTTTTGTGCTGGGCACCATTCCATACCTTTAGTTTAATGGAGCTTTCCTTCAACTCATCACTGTACCTACATGCTGTTCTGAAGACAGGCTTTCCTCTTGCTACGAGCTTAGCCTATTTCAACAGCTGCGTCAACCCCTTCATCTACGTGCTGGTGGGTAAGAAGGTTCGCCAGCTCCTGAAACGCTCGTGTCTGGACATCACAAAGAGTTCTCTGCGGGAGCTCAACCAGTCCATCTCTGCAACTGAATTAGTGCCTGTAGCTGACATAAGAGCTCCATACATCAGTGCACCACAGGATCCCACAGAATCATCAACTGTTTGATTATACTGATCGAATCCCACAGTTACCTATAGCAGAAACCCGGCAGAAACACGGCAGAAACCCGGCAGAAACCCGGCAGAAACTGCCATTTGACCTAAAAGAACCAGCCTGACCATTCTTTTAGTCCAAATGTgacttattttatattttacttaGTGTAACATTTGTGCTAGTTGTTTGAGTTGGATACTTCCAAGTAGCAATTACTTTGAGTGCCAAGGTCTGTTTGAGTGCCAAGGTCTGCTTGAGTGCCCTCATAGGAAAACTTGAGTAAAGACATACACTAAAAGTATAACTTGCACAGGGGAAAATAAGCAACTTTATTTAATGATTTTAAAAATAAGTATCTGATCCTATTTACCCCGAAGACTAATAGGAAAGGAGGCCACCCTTCCCCACTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTAGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGCTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGAATGATTAGAAGCAGATCTACCATTTTCATAAACACTTTGCATTTAGATTTCGGTCATCAAACAAATCCAAGTTTAACCCTGACGGGAATTTAGTCCTTCTCTTTCTTGTTACGTTGAAAAGTTTCCCATTACAAGTTGATTTGCTGTTGTAGTGTACTCTGTTATTATATAGCTGCTGTACACATGAGACAAATTCTATTAGGCCGTTCTTTTTATGTTGTAATTATATTAAGCGTATAAATTAATCTCAAtgtttaaattacattttctaaTAATGTTCACATTGTCAATCactgtgtgtgattttgtttttGTGGGAATTTGAAATATATGAGGGAAATCTGGCATTAATTGTAATATACTTGAGTCAAAGGAATAAACAATGAATCCAGTCCCTTCTCTGTA
>XM_036959388.1
acaggactgtttcgtttgttcggtcttcctagttgttattttgtttagtgttccgTTTTGATTATAtttaaaatcatgaacacttaccacgctgcaccttggtcctcaccttcttccaccaacgagaaTCGGTACAAGTTCACCCAAACGACAAAATTAAACCTTGGTTTTCTTGCCCTGTAATATGTCTATGGaaaagGATAAGGACCAACCCAGCTGTATTTTACAATCTCTGTTCTAAAACAACTGGAGGAACTGTGACCGGGATAATTACAAGGACATTTGTGTCAAAGAAGTGCAAGGGCTTTCAGGACCTCTGCTTACAAATAGTAGGTAGTGTTGCAGCAATGGAAAAATCCACGGAGGACTACGACAATTACACCTACGATTATCTGGAGTACGGAGACTTCGAAGAAGAAAAAGCCCCAGACGGATACTCCCAGAAGGAGGCTATGCACATCATATCAGTCGTCATGTATAGTATTTCATTTGTGCTCGGTGTCACTGGAAATGGAACAGTCATATGGGTGTTGGCATTTAAAAGCAAACGGACAGTGAACAGTGTCTGGTTGCTGAACATGGCTATAGCAGATTTTGTGTTTGTGCTCTTTTTACCCTTCTCTATCGACTACGTCCTTCGAGACTTCCACTGGTGCTTTGGCCTGGTCATGTGTAAGCTAAACTCGTTTGTGTCTGTGATGAACATGTACGCCAGTGTGCTCTTTCTCACAATGCTCAGTCTAGACAGGTATGTCTCATTGATTCACCTTAGCTGGTCTCAGAGGTGTCGCAGTGTATGGCGAGCCTGGATCGTatgtggctgtgtgtggggggtgtcTGCTCTACTGAGCCTCCCTACCCTGATATTCCGTGACACTGTGAGTTACCGTGACCGGGTGATGTGCTTCAACAACTTTAATGTCCAGGATAGACATACAGCTGCTGTGAGACACATTACGTTGGTGGTCATCCGTACAGCAGTGGGCTTCTTACTGCCCTTCAGTGCTGTCTGTGTGACTGGAATTCTCCTGGCAATCAAAGTCCACCAGTCTGACGATTCTGTGAGCCTGTCTAGCTTTTCTAAGACCGTTTCAGCTGTCATTCTGGCCTTCTTTTTGTGCTGGGCACCATTCCATACCTTTAGTTTAATGGAGCTTTCCTTCAACTCATCACTGTACCTACATGCTGTTCTGAAGACAGGCTTTCCTCTTGCTACGAGCTTAGCCTATTTCAACAGCTGCGTCAACCCCTTCATCTACGTGCTGGTGGGTAAGAAGGTTCGCCAGCTCCTGAAACGCTCGTGTCTGGACATCACAAAGAGTTCTCTGCGGGAGCTCAACCAGTCCATCTCTGCAACTGAATTAGTGCCTGTAGCTGACATAAGAGCTCCATACATCAGTGCACCACAGGATCCCACAGAATCATCAACTGTTTGATTATACTGATCGAATCCCACAGTTACCTATAGCAGAAACCCGGCAGAAACACGGCAGAAACCCGGCAGAAACCCGGCAGAAACTGCCATTTGACCTAAAAGAACCAGCCTGACCATTCTTTTAGTCCAAATGTgacttattttatattttacttaGTGTAACATTTGTGCTAGTTGTTTGAGTTGGATACTTCCAAGTAGCAATTACTTTGAGTGCCAAGGTCTGTTTGAGTGCCAAGGTCTGCTTGAGTGCCCTCATAGGAAAACTTGAGTAAAGACATACACTAAAAGTATAACTTGCACAGGGGAAAATAAGCAACTTTATTTAATGATTTTAAAAATAAGTATCTGATCCTATTTACCCCGAAGACTAATAGGAAAGGAGGCCACCCTTCCCCACTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTAGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGCTGTCTCTGGAACAGACTGTCTCTGGAACAGACTGTCTCTGGAACAGGAATGATTAGAAGCAGATCTACCATTTTCATAAACACTTTGCATTTAGATTTCGGTCATCAAACAAATCCAAGTTTAACCCTGACGGGAATTTAGTCCTTCTCTTTCTTGTTACGTTGAAAAGTTTCCCATTACAAGTTGATTTGCTGTTGTAGTGTACTCTGTTATTATATAGCTGCTGTACACATGAGACAAATTCTATTAGGCCGTTCTTTTTATGTTGTAATTATATTAAGCGTATAAATTAATCTCAAtgtttaaattacattttctaaTAATGTTCACATTGTCAATCactgtgtgtgattttgtttttGTGGGAATTTGAAATATATGAGGGAAATCTGGCATTAATTGTAATATACTTGAGTCAAAGGAATAAACAATGAATCCAGTCCCTTCTCTGTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04310 GPR1; G protein-coupled receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959387.1 False 2354 mRNA 0.43 3 44376582 44379967
XM_021579785.2 False 2481 mRNA 0.43 3 44376582 44379969
XM_021579786.2 False 2497 mRNA 0.43 3 44376582 44379969
XM_036959388.1 True 2368 mRNA 0.43 3 44376582 44387701

Neighbor

gene id symbol gene type direction distance location
LOC110501913 LOC106582458 coding downstream 7573 44355163 ~ 44369009 (-)
LOC118936581 NA coding downstream 358010 44014413 ~ 44018572 (-)
LOC118943594 LOC106576908 coding downstream 367407 44007225 ~ 44009175 (-)
LOC110502166 LOC106576908 coding downstream 421068 43953651 ~ 43955514 (-)
LOC110502164 LOC106582432 coding downstream 489304 43886281 ~ 43887278 (-)
LOC110502171 LOC106582464 coding upstream 87017 44473683 ~ 44553607 (-)
rbm45 LOC106582466 coding upstream 170430 44558131 ~ 44562475 (-)
LOC110501919 LOC106582468 coding upstream 210653 44598354 ~ 44632193 (-)
LOC110502136 NA coding upstream 247183 44634884 ~ 44636332 (-)
LOC110501923 LOC106582471 coding upstream 271868 44659569 ~ 44664863 (-)
G1814309 NA non-coding downstream 85099 44288753 ~ 44291483 (-)
G1814228 NA non-coding downstream 185199 44156761 ~ 44191383 (-)
G1814235 NA non-coding downstream 194797 44181417 ~ 44181785 (-)
G1814210 NA non-coding downstream 260968 44115331 ~ 44115614 (-)
G1814207 NA non-coding downstream 281671 44094384 ~ 44094911 (-)
G1814365 NA non-coding upstream 17848 44405549 ~ 44409088 (-)
G1814377 NA non-coding upstream 41365 44429066 ~ 44430518 (-)
G1814379 NA non-coding upstream 42911 44430612 ~ 44431597 (-)
G1814375 NA non-coding upstream 48329 44436030 ~ 44441556 (-)
G1814384 NA non-coding upstream 55461 44443162 ~ 44443762 (-)
G1812404 NA other downstream 1698822 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1771562 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1987309 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2771351 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2910935 41447899 ~ 41523764 (-)
G1814480 NA other upstream 285746 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1451049 45838750 ~ 45840982 (-)
G1816841 NA other upstream 2837850 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3013421 47400985 ~ 47402047 (-)

Expression


Co-expression Network