LOC110501919 (LOC106582468)


Basic Information

Item Value
gene id LOC110501919
gene name LOC106582468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44598354 ~ 44632193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959398.1
TATGTATTGAAAACACAAATGAAATGCAAAGCATGATGGGATTTGATTACAATTTAGCTCATATCTTATTATCGTTGTGACAGCTGCCTTTCCGTGCACAAACACGGAAGCAGTATGGCGTCAAACAACAATAGCTCCGACAGGCAACGAATTGCACAGCAAAGATTAAGCAGAATTGCAGCGCATTTACATAAACATGAGGACGGTAACTCGGGAATTATCGCAAAAGAATGCAAAATTGATGCGACTGGTTCACCGGAAGAGAATAAAGGGACGGTGCCGAGAAAGAGGCAGGAGATTATGAAGTGGAATGGCTGGGGGTACAGTGACTCCAAATTCCTCTTTAACAAGAAGGGTCAAGCAGAGTTTACAGGCAAAAGGTATAGGCTAAGTGGGATGACCCTGCCCAGATTGCAGGACTGGTTTGAAAATACCTTTGGTGCCAGTGTGAAGCATAAAAGCCCTGCGACACCAGTCCTGAATGCCAGCGTTGTGCCGCCGCCCAGACTGAACGAGGCATTCGTAGAGAACCTGAAGGCCACAGGCATCCCATTCTCCAATGAGGCGGAGGACAGGGTGTTCCGTGCCCACGGTCATTGCTTACATGAAATCTTTGCTCTCAGAGAAGGGAAGAAATTTGAGCGTGTTCCAGACATGGTGGTGTGGCCAAACTGCCACAAAGATGTGGTGAAAATTGTGGAGCTGGCGTGCAAGCACAATGTTTGTCTGATACCGTACGGCGGAGGTACCAGTGTGACCAGTGCTCTAGAGTGCCCCCCGGAGGAGACCCGCTGCATCGTCTCTCTGGATACTTCCCAGATGAACCGCATATTGTGGCTCGACGAGAATAATTTAGTCGCCCACGTTGAAGCTGGCATCATCGGTCAGGATCTGGAGAGATTActcAACGAGAGTGGCTACTGTTCGGGGCATGAGCCAGACTCCATGGAGTTCAGTTCGCTGGGCGGCTGGGTGGCTACTAGAGCATCGGGCATGAAGAAGAACGTATATGGTAACATTGAGGACCTGGTGATCCACATAAAGGCGGTGACCCCTCGAGGGGTGATCGAGAAGAGCTGCCAGGGGCCACGCACGTCCACTGGGCCAGACATCCACCACTTCATCCTGGGCTCAGAAGGAACCCTTGGTGTGGTTACCGAGGTAACGATGAAGATCCGACCAATCCCAGAGTACCAGAAGTATGGCTCGGTGGTCTTCCCTAACTTTGAGGCAGGCGTGGCCTGCTTGCGAGAGGTTGCCAAGCAGAGGTGTGCACCGGCCTCCATCCGGCTCATGGATAACAAACAGTTTCATTTCGGTCATGCCCTGAAACCTCAAGTGTCGTCCATTTTCACACATTTTGTTGAAGGGTTAAAGAAGTTCTACATCACCAAGTTGAAAGGTTTCGACCCCCACCAGTTGGTGGTTGCCACCCTTCTCTTTGAAGGGGACCGCGAGAGGGTCTTGCAGCATGAAAAACAAGTTTATGACATCGCAGCAACATTTGGGGGCCTGGCAGCTGGAGAGGACAATGGGCAGAGAGGCTACATACTGACCTTTGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTGTGTGGTTGCAGAATCCTTTGAGACATCGGTGCCTTGGGACAGGGTATTGGACCTTTGCCAGAATGTCAAGGAGAGAATTATCAGAGAGTGTAAAGAAAGAGGAGTCCAGTTTCAACCGTTGACCTCATGCAGAGTGACTCAGACCTATGACTCTGGCGCATGTATATACTTCTACTTTGCCTTCAACTACAGAGGACTGGCGGATCCAGTCCATACATACGAACAAGTGGAGCATGCTGCCAGAGAGGAGATCCTAGCCAATGGAGGAAGCCTCTCGCACCACCATGGAGttGGGAAACTTCGTAAGGAGTGGATGAAGGACAGCATCTCTAACGTGGGCGTCGGGATGCTCAAGTCCGTTAAGGAATATGTGGACCCGGAAAACATTTTCGGCAACCGAAACCTCCTCTAATTTATTTACATGACATTTTTTATAACAACCTCTTGGAATAATGGGTTACTAAATATGACGAGCAGTATCAATGTCTTTCACCTTCGGGGTGACTTCGTTGTGCAGTCAACATCAGTCGGATGACTTGCCTTGCATTACATTACTGCACTTAACgtgctggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggttgccagtttgaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagtt
>XM_036959399.1
TTGTAATATGTATTGAAAACACAAATGAAATGCAAAGCATGATGGGATTTGATTACAATTTAGCTCATATCTTATTATCGTTGTGACAGCTGCCTTTCCGTGCACAAACACGGAAGCAGTATGGCGTCAAACAACAATAGCTCCGACAGGCAACGAATTGCACAGCAAAGATTAAGCAGAATTGCAGCGCATTTACATAAACATGAGGACGGTAACTCGGGAATTATCGCAAAAGAATGCAAAATTGATGCGACTGGTTCACCGGAAGAGAATAAAGGGACGGTGCCGAGAAAGAGGTATAGGCTAAGTGGGATGACCCTGCCCAGATTGCAGGACTGGTTTGAAAATACCTTTGGTGCCAGTGTGAAGCATAAAAGCCCTGCGACACCAGTCCTGAATGCCAGCGTTGTGCCGCCGCCCAGACTGAACGAGGCATTCGTAGAGAACCTGAAGGCCACAGGCATCCCATTCTCCAATGAGGCGGAGGACAGGGTGTTCCGTGCCCACGGTCATTGCTTACATGAAATCTTTGCTCTCAGAGAAGGGAAGAAATTTGAGCGTGTTCCAGACATGGTGGTGTGGCCAAACTGCCACAAAGATGTGGTGAAAATTGTGGAGCTGGCGTGCAAGCACAATGTTTGTCTGATACCGTACGGCGGAGGTACCAGTGTGACCAGTGCTCTAGAGTGCCCCCCGGAGGAGACCCGCTGCATCGTCTCTCTGGATACTTCCCAGATGAACCGCATATTGTGGCTCGACGAGAATAATTTAGTCGCCCACGTTGAAGCTGGCATCATCGGTCAGGATCTGGAGAGATTActcAACGAGAGTGGCTACTGTTCGGGGCATGAGCCAGACTCCATGGAGTTCAGTTCGCTGGGCGGCTGGGTGGCTACTAGAGCATCGGGCATGAAGAAGAACGTATATGGTAACATTGAGGACCTGGTGATCCACATAAAGGCGGTGACCCCTCGAGGGGTGATCGAGAAGAGCTGCCAGGGGCCACGCACGTCCACTGGGCCAGACATCCACCACTTCATCCTGGGCTCAGAAGGAACCCTTGGTGTGGTTACCGAGGTAACGATGAAGATCCGACCAATCCCAGAGTACCAGAAGTATGGCTCGGTGGTCTTCCCTAACTTTGAGGCAGGCGTGGCCTGCTTGCGAGAGGTTGCCAAGCAGAGGTGTGCACCGGCCTCCATCCGGCTCATGGATAACAAACAGTTTCATTTCGGTCATGCCCTGAAACCTCAAGTGTCGTCCATTTTCACACATTTTGTTGAAGGGTTAAAGAAGTTCTACATCACCAAGTTGAAAGGTTTCGACCCCCACCAGTTGGTGGTTGCCACCCTTCTCTTTGAAGGGGACCGCGAGAGGGTCTTGCAGCATGAAAAACAAGTTTATGACATCGCAGCAACATTTGGGGGCCTGGCAGCTGGAGAGGACAATGGGCAGAGAGGCTACATACTGACCTTTGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTGTGTGGTTGCAGAATCCTTTGAGACATCGGTGCCTTGGGACAGGGTATTGGACCTTTGCCAGAATGTCAAGGAGAGAATTATCAGAGAGTGTAAAGAAAGAGGAGTCCAGTTTCAACCGTTGACCTCATGCAGAGTGACTCAGACCTATGACTCTGGCGCATGTATATACTTCTACTTTGCCTTCAACTACAGAGGACTGGCGGATCCAGTCCATACATACGAACAAGTGGAGCATGCTGCCAGAGAGGAGATCCTAGCCAATGGAGGAAGCCTCTCGCACCACCATGGAGttGGGAAACTTCGTAAGGAGTGGATGAAGGACAGCATCTCTAACGTGGGCGTCGGGATGCTCAAGTCCGTTAAGGAATATGTGGACCCGGAAAACATTTTCGGCAACCGAAACCTCCTCTAATTTATTTACATGACATTTTTTATAACAACCTCTTGGAATAATGGGTTACTAAATATGACGAGCAGTATCAATGTCTTTCACCTTCGGGGTGACTTCGTTGTGCAGTCAACATCAGTCGGATGACTTGCCTTGCATTACATTACTGCACTTAACgtgctggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggttgccagtttgaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagtt
>XM_036959400.1
CAACATTGTAATATGTATTGAAAACACAAATGAAATGCAAAGCATGATGGGATTTGATTACAATTTAGCTCATATCTTATTATCGTTGTGACAGCTGCCTTTCCGTGCACAAACACGGAAGCAGTATGGCGTCAAACAACAATAGCTCCGACAGGCAACGAATTGCACAGCAAAGATTAAGCAGAATTGCAGCGCATTTACATAAACATGAGGACGGTAACTCGGGAATTATCGCAAAAGAATGCAAAATTGATGCGACTGGTTCACCGGAAGAGAATAAAGGGACGGTGCCGAGAAAGAGGCAGGAGATTATGAAGTGGAATGGCTGGGGGTACAGTGACTCCAAATTCCTCTTTAACAAGAAGGGTCAAGCAGAGTTTACAGGCAAAAGGTATAGGCTAAGTGGGATGACCCTGCCCAGATTGCAGGACTGGTTTGAAAATACCTTTGGTGCCAGTGTGAAGCATAAAAGCCCTGCGACACCAGTCCTGAATGCCAGCGTTGTGCCGCCGCCCAGACTGAACGAGGCATTCGTAGAGAACCTGAAGGCCACAGGCATCCCATTCTCCAATGAGGCGGAGGACAGGGTGTTCCGTGCCCACGGTCATTGCTTACATGAAATCTTTGCTCTCAGAGAAGGGAAGAAATTTGAGCGTGTTCCAGACATGGTGGTGTGGCCAAACTGCCACAAAGATGTGGTGAAAATTGTGGAGCTGGCGTGCAAGCACAATGTTTGTCTGATACCGTACGGCGGAGGTACCAGTGTGACCAGTGCTCTAGAGTGCCCCCCGGAGGAGACCCGCTGCATCGTCTCTCTGGATACTTCCCAGATGAACCGCATATTGTGGCTCGACGAGAATAATTTAGTCGCCCACGTTGAAGCTGGCATCATCGGTCAGGATCTGGAGAGATTActcAACGAGAGTGGCTACTGTTCGGGGCATGAGCCAGACTCCATGGAGTTCAGTTCGCTGGGCGGCTGGGTGGCTACTAGAGCATCGGGCATGAAGAAGAACGTATATGGTAACATTGAGGACCTGGTGATCCACATAAAGGCGGTGACCCCTCGAGGGGTGATCGAGAAGAGCTGCCAGGGGCCACGCACGTCCACTGGGCCAGACATCCACCACTTCATCCTGGGCTCAGAAGGAACCCTTGGTGTGGTTACCGAGGTAACGATGAAGATCCGACCAATCCCAGAGTACCAGAAGTATGGCTCGGTGGTCTTCCCTAACTTTGAGGCAGGCGTGGCCTGCTTGCGAGAGGTTGCCAAGCAGAGGTGTGCACCGGCCTCCATCCGGCTCATGGATAACAAACAGTTTCATTTCGGTCATGCCCTGAAACCTCAAGTGTCGTCCATTTTCACACATTTTGTTGAAGGGTTAAAGAAGTTCTACATCACCAAGTTGAAAGGTTTCGACCCCCACCAGTTGGTGGTTGCCACCCTTCTCTTTGAAGGGGACCGCGAGAGGGTCTTGCAGCATGAAAAACAAGTTTATGACATCGCAGCAACATTTGGGGGCCTGGCAGCTGGAGAGGACAATGGGCAGAGAGGCTACATACTGACCTTTGTCATCGCTTACCTCCGGGACTTGGGGATGGACTACTGTGTGGTTGCAGAATCCTTTGAGACATCGGTGCCTTGGGACAGGGTATTGGACCTTTGCCAGAATGTCAAGGAGAGAATTATCAGAGAGTGTAAAGAAAGAGGAGTCCAGTTTCAACCGTTGACCTCATGCAGAGTGACTCAGACCTATGACTCTGGCGCATGTATATACTTCTACTTTGCCTTCAACTACAGAGGACTGGCGGATCCAGTCCATACATACGAACAAGTGGAGttGGGAAACTTCGTAAGGAGTGGATGAAGGACAGCATCTCTAACGTGGGCGTCGGGATGCTCAAGTCCGTTAAGGAATATGTGGACCCGGAAAACATTTTCGGCAACCGAAACCTCCTCTAATTTATTTACATGACATTTTTTATAACAACCTCTTGGAATAATGGGTTACTAAATATGACGAGCAGTATCAATGTCTTTCACCTTCGGGGTGACTTCGTTGTGCAGTCAACATCAGTCGGATGACTTGCCTTGCATTACATTACTGCACTTAACgtgctggggcggcagggtagcctagtggttagagcgttggactagtaaccgaaaggttgccagtttgaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagtt

Function

NR:

description
alkyldihydroxyacetonephosphate synthase, peroxisomal-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959398.1 False 2284 mRNA 0.50 20 44598354 44632182
XM_036959399.1 False 2200 mRNA 0.50 19 44598354 44632188
XM_036959400.1 True 2237 mRNA 0.50 19 44598354 44632193

Neighbor

gene id symbol gene type direction distance location
rbm45 LOC106582466 coding downstream 35879 44558131 ~ 44562475 (-)
LOC110502171 LOC106582464 coding downstream 44747 44473683 ~ 44553607 (-)
LOC110501914 LOC106582459 coding downstream 210653 44376582 ~ 44387701 (-)
LOC110501913 LOC106582458 coding downstream 229345 44355163 ~ 44369009 (-)
LOC118936581 NA coding downstream 579782 44014413 ~ 44018572 (-)
LOC110502136 NA coding upstream 2691 44634884 ~ 44636332 (-)
LOC110501923 LOC106582471 coding upstream 27376 44659569 ~ 44664863 (-)
LOC110501924 hoxd3ab coding upstream 285286 44917479 ~ 44939556 (-)
LOC110501925 hoxd4ab coding upstream 296343 44928536 ~ 44933201 (-)
LOC110501927 hoxd9ab coding upstream 311019 44943212 ~ 44945287 (-)
G1814349 NA non-coding downstream 24436 44496573 ~ 44573918 (-)
G1814437 NA non-coding downstream 56734 44539248 ~ 44541620 (-)
G1814423 NA non-coding downstream 64659 44533430 ~ 44533695 (-)
G1814384 NA non-coding downstream 154592 44443162 ~ 44443762 (-)
G1814482 NA non-coding upstream 44111 44676304 ~ 44676524 (-)
G1814483 NA non-coding upstream 50188 44682381 ~ 44682708 (-)
G1814486 NA non-coding upstream 66550 44698743 ~ 44699067 (-)
G1814492 NA non-coding upstream 77820 44710013 ~ 44710321 (-)
G1812404 NA other downstream 1920594 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 1993334 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 2209081 42386822 ~ 42389273 (-)
G1811042 NA other downstream 2993123 41604974 ~ 41605231 (-)
G1814480 NA other upstream 41254 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 1206557 45838750 ~ 45840982 (-)
G1816841 NA other upstream 2593358 47225551 ~ 47226646 (-)
G1816929 NA other upstream 2768929 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 2839101 47471294 ~ 47473384 (-)

Expression


Co-expression Network