LOC110501925 (hoxd4ab)


Basic Information

Item Value
gene id LOC110501925
gene name hoxd4ab
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44928536 ~ 44933201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579803.2
CGTCGAATTACTTATCTACTTTTACAGATGTTTTGAATCATTCTTCATAACAATTTACAAATCTGGATGGATGGAAAGCTCTTCGTTTAATTGCTGCATTGTGTCATTTTAGGGTGATTTAAAatgatatattatattgtattaccATTGTGTGCGAGTACATGTTTTTAGTAATATGCACTTACAGTGTCACGTGTCATTTAAttggttgatttgatttgataatataaGAAACCTTTGCAGGTGTAGCTTTTTGGCCAGTACACCTATCACCAAAGCCAAACAATCCTTCTCATTTTGATAGTGAACATATTAAAAAAGCTATCATACCAGACTGAAATCTAAACAATTTCGAACATGGCTTACTTTTTTAACATTTACATTTCAATCATTTAATTATTGATTGTTTGGCATCGGTTCGTTGCCACGAGGCTCTTTCAGGAGTTATGAAAGGGATAGGGTAGATGAAATGATGAGATTCTTGTAACTTTTGGATGACCCTTTCTTGACAAAGACAGTCCCCATCAATTGTCCCCAGGCTTTATCCCCCCTCTTTTTGAGCCCGGGAGACGTTTTgtatcttttgtttgtttatctgtcAGACTCACTGGCTTTAGTTTGATTTAGTATTGTAGAAGTTGAAGCATGTTAACCATAGTATTGCACAAAACCATCTAAATGTCCGTATATACACAGACGTTGTATTTATTCCATTCAGATTGTTTCCCATTGACGGTTAGATGATCATGATTGATATTTAGATATTGACATTAACTATTTAAAATGTTACATATAACATCTTATTTTTCAATACAGGGCTCACATTGTCAATCCTTCATTGAAATTGGTTAAATATTTGGTTTTATTCAACATAATTTAGATGTTTTGGAGTTAGTGGAAATTGCTGCTATTGGTGTTTATATGTAGGCCCTACCCGTTAATGAAATAGCTTTACCTCCATTGGCCCTATCTGGTCACATGGTTCTCTAACTTTATTCAGTTGACAGCAAATAGGAGGGCTTTATGGTGGTGGAAAAAAGACAACTCGAGAAAACATTGTAATTTCTACCTTCATAAATTAATGGCCATGAGTTCGTATATGCTGAACTCTAAGTATGTGGACCCACAATTTCCCCCTTGTGAGGAATATACGCAAAATAGCTATCTACATGAGCAGGGAAGAGGCTACTACCGTCCATCGCAGGACCCAGATTTGCAGCATCCAGGAATCTATCCACGGTCAAACTACCCCGAGCAGCCCTTCAGTTGTACCACTGTGCATGGTCCTACAGTAGAGCTACGGGGTCATGTGCAGGGGCGAGACAGTCACCCTAGCACTTTTACCGCACAGACCGAACCGTGCACCCCGGTCCAAGTGACTGGACCCCGGACTTGTGGTCAGCAACAAAACACAAAGAATCAAAACGGGATACAAGCCAAGCAGCCTGCAGTAGTTTACCCCTGGATGAAGAAAGTCCACGTAACTACGGTAAACCCGGATTACACAGGACCTGAACCCAAACGGTCTCGGACAGCTTATACAAGACAGCAGGTTTTGGAACTGGAAAAAGAATTTCATTTTAACAGGTATCTGACCAGGCGGCGTCGCATAGAGATTGCCCATATACTCGTTCTCTCCGAGCGTCAGATCAAAATCTGGTTTCAAAACAGAAGAATGAAATGGAAAAAAGACCACAAACTACCGAACACAAAGGGAAGAGCTGCTTCTGCTTCCGGCCAACAGTTACCAAGTATCCAGAAGGATAACCAGACTGATGAAACAACTTTCTAAGATGTGAAAACTTTGACCGTTCAATGAATTGTATATCACATACTATATTATACAATTGACTTTGCATGGTCTCAAAACATGACATTTTGGTCATTGTGATTTAACGTACAATAGTTATATAATGTCAGTTACAGTCAGAAGGACCCTCGTTGTGTTGGCTCATTGAATTGAGTCAATTTCCAACATTGTAACTGAACTGAGAAGCGTTTCATCACTACATGCTTATTAACATGCTTCGAAGAGGTATTGCAGATCGAAATACATTTTGTTAGAGATGTTTTCTGATTATACTCTTCTCGCTGATTCTATAACGTCACTCTTCCCACGTGCACCACAAAAGTCAGAGTAAGGCATGaacatgtatatatttatttttaaaaaaaattaaaaatacgtAAAATGATGTGAAGCTTTTGTACACACCTTAATTAGAAATTGTGTTGTGATGAAATCGAACTATTaagacaaataatatttgattcaTATGATTgctaaaaaaaagaaaaggtaATTGCTGCATCAGTTGATCTATACATTATTTTCAGACAAGTGACAATATTTGTTACTTTAATATAGGCTAGCTTAAAGAAACTATTGAACTCGTATTTATGTGCGCTAACTGGTTGAATTTTTTTgtttaacgttttttttttaaaacttgtaTACAATAAAGCTTTTAAAATGGCGTTAAATTCTATTGAGAAACAAGACATTCCAGTGTGCAGACTCTTCCCAGGGCCCGTATTCAGTTCTAAATCTCTCTGGACATCTTTGTAAACAGTGTACATTTAAAGCGGGTCTCACACATGGCATCTGAAACTCTATCATGACTTTGTCTTGTTCTTTGCATCGAATGTATATTTATTTAGATGCTTCACTATTTTCTATTTTGATCAAAATCGAACAGAACATTATTAATAGTATATATTCAATGTTAAGCACGTAGAGGGACATAAATACGTGTAACAACCGATGTTTTCCCTTATTCTTATTCAACGACAATTTGTAATATAGAGTGTTTACATTtctttatgattatttatttaattaaatatttgtACATTTCCTTATTAAAACCCACAACAGTTCCAAACATATTTGAGCAACGAACGTTTTATTGTATGCAATCTGCTTACAACTGTTATGGATTATTAGCAATTATCTCACGTTTTCTTATgcagtattacatttttttttactctggCATTGATTTAAACCAAACCTAGCCACACGGGCATTCATGTCATGTCTCAAGACAGATATTCTTATTGTTCCTATCATTGTCCTCGTGACAAAAAGCGAAGACGGCTTGCATTGCGAAGACGTCTTCCCTCTGAAGAGTCTTCACGACGAGAAGTTGAAAAGGTATTTCAACTGAAGTTCGACAAAAGCTCCAGAGGCAGGTTCACCCAGAGGACAGTGCTTCTATAGCCTTAGACACATTTCAGCCGCGAGGAGTGACCTCTGAACCCTTAACCCGTTGGACCTATAGTCTACTTCTCTCACTGGCGCTATTCGCATGGAGTTTTTCATTAGATACATGTTGTACTTTTAGTATTAGAATATGGAACGCTTATATAACCTGGTTAAACATGCCACGTTGTAAAGCCTATATTTATTCTGCCAGATTGGTTGGTTGCATGTCACGCTGTGTTAATATGCAATCCTGGCTGACCTTTTTtgtgtatcggcttttttttgttgtctgtatatACATGCGAAACTTTTTAATGGGAAAATAGAGATTGTTCCATGATATGCATTGTGGTGGCACAGAGCACTCACATTTGTCAATATATTTCTGTATCAAGTATTCTGAGGTTCATGCTTTACAAAAATGTTTGTCATAGCCATCAATGCTTGATTTACACAAAGGTTGACACATCTCACAGATTGAGCTATTTATTTTTACCCTTATTGTGCTTGTttgagataaaaaaatatatatgtggcATTGTTGGATGACAATGTGACTAAGTTCAGTTTTATAGCAAGAATCATCAAATGTCCCCTTAACCACACCAATGTTAGTCAGTGCCATAGATTTCGGGAATTTGAATGTGGTCCTATCCAAACCAGTCAAGGAACTGTTAGCAAAATCGTAGGCTCAGTGTGATTATATTTGTGACCATGCTTGGATTAAAACCTGTATAACTTGAATGCCTGtctgcttctctctgtgtgtgtttctgtgtgtgtgttttgtttctttgtgtgtgtgtgtgcgtgtgtttgtgtgtgtgcgtgtgtttgtgtgagtgcatgtgtctTCACATTTGCGCCCGCTCCTTTATAAGCTTCGTGTCACTCTCATCAGGCCTTTACACTGATACCTATTCATCTTCCGTTTTCCACTACATAGATGTCAGTGTACAAGCAATGTGCGCATGTCATAGCAAATGAAAGAAAACTGTACCAAATGATGCAATAATAAATAACAGTTCTACATGCAAACCA

Function

NR:

description
homeobox protein Hox-D4a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579803.2 True 4249 mRNA 0.37 2 44928536 44933201

Neighbor

gene id symbol gene type direction distance location
LOC110501923 LOC106582471 coding downstream 263673 44659569 ~ 44664863 (-)
LOC110502136 NA coding downstream 292204 44634884 ~ 44636332 (-)
LOC110501919 LOC106582468 coding downstream 296343 44598354 ~ 44632193 (-)
rbm45 LOC106582466 coding downstream 366061 44558131 ~ 44562475 (-)
LOC110502171 LOC106582464 coding downstream 374929 44473683 ~ 44553607 (-)
LOC110501927 hoxd9ab coding upstream 10011 44943212 ~ 44945287 (-)
LOC110501926 hoxd10ab coding upstream 14461 44947662 ~ 44950370 (-)
LOC110501928 hoxd11ab coding upstream 21099 44954300 ~ 44956065 (-)
LOC110501930 hoxd12ab coding upstream 26556 44959757 ~ 44962879 (-)
LOC118943612 NA coding upstream 32435 44965636 ~ 44967134 (-)
G1815143 NA non-coding downstream 12922 44915336 ~ 44915614 (-)
G1814669 NA non-coding downstream 30161 44897801 ~ 44898375 (-)
G1814665 NA non-coding downstream 32894 44895408 ~ 44895642 (-)
G1814653 NA non-coding downstream 43513 44884815 ~ 44885023 (-)
G1814652 NA non-coding downstream 43887 44884355 ~ 44884649 (-)
G1815184 NA non-coding upstream 60776 44993977 ~ 44994624 (-)
G1815196 NA non-coding upstream 88097 45021298 ~ 45040004 (-)
G1815198 NA non-coding upstream 90323 45023524 ~ 45024465 (-)
G1815218 NA non-coding upstream 110128 45043329 ~ 45043619 (-)
G1814480 NA other downstream 254648 44673447 ~ 44673888 (-)
G1812404 NA other downstream 2250776 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2323516 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 2539263 42386822 ~ 42389273 (-)
G1815615 LOC106582489 other upstream 905549 45838750 ~ 45840982 (-)
G1816841 NA other upstream 2292350 47225551 ~ 47226646 (-)
G1816929 NA other upstream 2467921 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 2538093 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 3128848 48057851 ~ 48064453 (-)

Expression


Co-expression Network