LOC110501930 (hoxd12ab)


Basic Information

Item Value
gene id LOC110501930
gene name hoxd12ab
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 44959757 ~ 44962879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579806.2
GCCAATGGTGGGACTGAACAACATGTTTTGCATATCACGTGACACTGCATTAACAAATCAACAAttcattttcctttattatttagCAGTCGCTAAAAGGGTTGTAAGAAGCGTTTGAGAGAGCTTCATGGAAATGTGTGAGCAAAATCTTCTGAATTCTGGCTATGTTGGTTCTCTGAATTTCCCTATTCCGGAGTCGTTATATTTTTCCAACTTGCGGAGCAATGGAGCTCATCTCCCCCAGCTGCATCAGATTTCCTACAACAGGCGAGAGGTGTGCTCGCTCCCGTGGACTTCCCCAAATTCGTGCACATCTCCGCCTCAGAGCCGCGCCTGTAGTGGCTACTCTCCGCCGTTTCTACACAATTCAGTGCCTGTAAATACTCATCCCAACGACCACAACAAGGGACCATTTGACGAGTCCAGTAAATACTACTTTCAGGATGTAAACCACAAACCAGAAGAACATGCTAGACACTCGCATACCTTTTATGGTGAAGATGGAGTTATCCGTTCCGATAGCTCGAAATATGCATTTTCGAACTTGGacaggcggtcacatgattccggTGCACAACACGAACTGAATTACACCAACCAGGCAATTGCCTCCGGCATCAAGCAGTCGGCCAATTCAATTGCCCGACGTCAACCATCTGCAAGTAATGCATGTGCCAGAACTGCTTTTTCTGATGGCGCACCCTGGTGCTCTTCACAAGCGAAACTGAGAAAGAAGAGAAAACCATACACAAAGCCACAGCTTGTTGAACTTGAGAACGAATTCATGATGAACGAATTCGTAAACAGGCAAAAACGGAAGGAACTATCTGACAGACTGGAGTTGAGTGATCAACAAGTTAAAATATGGTTTCAGAACCGCAGAATGAAAAAGAAGAGACTAGTGATGCGCGGGCATGCGTTCTCCATGAACTGAGAGCCTTGGGCCCTGAAAGTGACCTCGTGCGGATTCTGTTCAGACAAGCTTCAAACCTCAAACTCTATTTATTTTCAGAAAGGCACATAATTAAACTTGTGTTTTGTAAAGCATGCGATTTAGGTTAATTGGATACATCTAATTATTTTGTTCAATGACCACACTTAGTATTTCTGAGCGTATATCTCGTATAacgctcttagaaaaaaaggggttTATTGTGTTTTTATATAGAACTTTTAATATAGCTATGCAatagtttatttttgtatttctgcAGTATCAAAATGAACGTTTATTTATAATTTAATCTCTGTAGCCTACATGTATAAATTATGTAGGATATGTCGTATTGTATTGACGAATAAAAATTGATGATATGGTTAGAAATGGATATTGCACATATCTGATTGGACGGGTCAGTCCTGCCTGAAATCAAACTGGGCCTACAGGAATTGCTCGTCCAAGCTCAAGTTCGTATTTGTCGGTGGTTTaatgaaccatgaaaaatagtTTTTTGGATTATATATTTTGTAAGTGTTTGTATGTCTATCGCATGGCTATAAtaattgtgtgtaaatgtatttttgtcttatttttttaTGTATGCGTAATCATAGGCTATATAATGCCTTCCGCTGTTGGCGCTGCTATCGAATGAGAGCTCTTGGGTAAGCTATAGCGTTCTCTCTATATTAAAGTAAAACTGCCTTGGGGGTCCAGTTAATGAGTAGACCTCATTTGAGCTGTTTACTGGCTCAATGTTAGTATCATGTGTGATATcggctaaatatatatatatatatatatatatatatacttatctAGAAAAGCAAAAAACATTTTCATCAATTCATACAATTCCATGCCGACTAGTGTGTGTATTATGCACATGTATACATTCGTGTAGACATTTGAGGCTACATGAACTGCTCAAAATTCCACGCTAACACAAGTGGTCCATGCTATTTAAATATCTGTCTAGCACGTACAcgagggctatttgatcaagtgGCACATCAACCACAGATAGGCTATTCCTATAAATAGACCTACATGAATTTACTACTTACTGAATATAGCTCTAACTCCTTAGCCTATACGATCTTCATGGTTTTGTTTGCTAGTAAACCATTTAATTGATTTATTGTTACGTTTAGAAATGGTTATATGGTTTTCGAGGGAGTAGTTTGTAGGATATATTTTAATCTTTGGTGTTTGGGGCGACCGGTTaggagcgttgtgccagtaaccgacaggtctgttgatgtgcccttgagcaaggcacatagCCATAATTTATCCTGTAAATCGCTGTGGAGAAGagctgtctgctaaatgactaaaatgtatagGCTATAcgtgttttaaaaatatatataattattaccAAAATAAGCACACACGTACTTAATAAAATGCTTTATTCGAAGTGTTCTAGCTCGAACTTTGTAATGGTCCGTTATTTAGCTCATAATTCTGAAATTATATTTTCTAGTTTTACAATCTCATTATCTGACAGGATCAAAGGGGAACGGTGTGTTCTCCCAAGGTCTTTTTTATGAGAACTCTGCTAGAATACGTATGCTCGTGCTCTTCAGATATGGGGGCGCCAAAACAAAGTTAAGGTCAAGTTAGTatcttacaacaacaaaaaatacctaCACAAACTTTAAGCAGATAGTAAACTGCCTTCTCATCAttcaaattgttttatttttttgtgtggtaTTTGCAAGGACTATTTCATGACGCATCCGGGCCTGAAAACAAGGCCTGAAATCAAGGCCCAACTCGTCCATTTGGTCAACAACAACTGTTTTGCGGTTTACTCATCTTTTCGGTGTCAATCTGTGTTCATTGCCAATAGTAATTATTTTGCATACGATATTATTGGTAGTATAGGACTAGATATTGTTGTTTTAGTACATGGGTtgcaataaaacatatattttttcccCTCTA
>TU2076595
TGTGCTCGCTCCCGTGGACTTCCCCAAATTCGTGCACATCTCCGCCTCAGAGCCGCGCCTGTAGTGGCTACTCTCCGCCGTTTCTACACAATTCAGTGCCTGTAAATACTCATCCCAACGACCACAACAAGGGACCATTTGACGAGTCCAGTAAATACTACTTTCAGGATGTAAACCACAAACCAGAAGAACATGCTAGACACTCGCATACCTTTTATGGTGAAGATGGAGTTATCCGTTCCGATAGCTCGAAATATGCATTTTCGAACTTGGacaggcggtcacatgattccggTGCACAACACGAACTGAATTACACCAACCAGGCAATTGCCTCCGGCATCAAGCAGTCGGCCAATTCAATTGCCCGACGTCAACCATCTGCAAGTAATGCATGTGCCAGAACTGCTTTTTCTGATGGCGCACCCTGGTGCTCTTCACAAGCGAAACTGAGAAAGAAGAGAAAACCATACACAAAGCCACAGCTTGTTGAACTTGAGAACGAATTCATGATGAACGAATTCGTAAACAGGCAAAAACGGAAGGAACTATCTGACAGACTGGAGTTGAGTGATCAACAAGTTAAAATATGGTTTCAGAACCGCAGAATGAAAAAGAAGAGACTAGTGATGCGCGGGCATGCGTTCTCCATGAACTGAGAGCCTTGGGCCCTGAAAGTGACCTCGTGCGGATTCTGTTCAGACAAGCTTCAAACCTCAAACTCTATTTATTTTCAGAAAGGCACATAATTAAACTTGTGTTTTGTAAAGCATGCGATTTAGGTTAATTGGATACATCTAATTATTTTGTTCAATGACCACACTTAGTATTTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579806.2 False 2899 mRNA 0.38 2 44959757 44962879
TU2076595 True 834 lncRNA 0.45 2 44961547 44962604

Neighbor

gene id symbol gene type direction distance location
LOC110501928 hoxd11ab coding downstream 3692 44954300 ~ 44956065 (-)
LOC110501926 hoxd10ab coding downstream 9387 44947662 ~ 44950370 (-)
LOC110501927 hoxd9ab coding downstream 14470 44943212 ~ 44945287 (-)
LOC110501924 hoxd3ab coding downstream 20201 44917479 ~ 44939556 (-)
LOC110501925 hoxd4ab coding downstream 26556 44928536 ~ 44933201 (-)
LOC118943612 NA coding upstream 2757 44965636 ~ 44967134 (-)
LOC110502174 LOC106572616 coding upstream 401611 45343530 ~ 45365813 (-)
LOC118943595 LOC106582449 coding upstream 457006 45419885 ~ 45432246 (-)
LOC110501936 LOC106572616 coding upstream 494347 45457226 ~ 45458628 (-)
LOC118943614 gdf3 coding upstream 556968 45519847 ~ 45520832 (-)
G1815143 NA non-coding downstream 44143 44915336 ~ 44915614 (-)
G1814669 NA non-coding downstream 61382 44897801 ~ 44898375 (-)
G1814665 NA non-coding downstream 64115 44895408 ~ 44895642 (-)
G1814653 NA non-coding downstream 74734 44884815 ~ 44885023 (-)
G1814652 NA non-coding downstream 75108 44884355 ~ 44884649 (-)
G1815184 NA non-coding upstream 31098 44993977 ~ 44994624 (-)
G1815196 NA non-coding upstream 58419 45021298 ~ 45040004 (-)
G1815198 NA non-coding upstream 60645 45023524 ~ 45024465 (-)
G1815218 NA non-coding upstream 80450 45043329 ~ 45043619 (-)
G1815235 NA non-coding upstream 113227 45076106 ~ 45076336 (-)
G1814480 NA other downstream 285869 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 406337 44473683 ~ 44553607 (-)
G1812404 NA other downstream 2281997 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2354737 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 2570484 42386822 ~ 42389273 (-)
G1815615 LOC106582489 other upstream 875871 45838750 ~ 45840982 (-)
G1816841 NA other upstream 2262672 47225551 ~ 47226646 (-)
G1816929 NA other upstream 2438243 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 2508415 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 3099170 48057851 ~ 48064453 (-)

Expression


Co-expression Network