LOC110501935 (gdf3)


Basic Information

Item Value
gene id LOC110501935
gene name gdf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45533097 ~ 45543990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579813.2
TTTGTATATTTTAGGCAAATGCTCTTTATCTGAGATAGGTCCTCATTAGCATATCTTGTCTACGCAGTCTCGCACCTAGGTGTCGATAGAAACCATCCGGGATGCCAATCAATCAGCGCCAATGATCAATCACACATTGGCACGCAGGGACTTTTAAATTCACaagcagacagagaaagaaaagcaGAACACACGCTGTAGAGGCTAGTTTGTTTGTAGCAAAGCCTAGGTCAAACGTGAAGAATGGCGACTTTGGTTATTTTAGCCCTAGCTATTTTATCCATTAGTGCGTCTGCTTTAGGAAATGGAGAAGATTTGAAGACTCAGGAGCGCTTGTTTTTAAATTCGTTGGGCCTCTCCGCTCGGCCAAAGCCGTCAGAACACCGCCGCGTTCCCTCGGTGTTGTGGAGGATGTTCAAACGTACCAGCAACCGGGAGAACGACACCCACGAAAGAGACCCGTGCATGGTGTCTGAGTATGGAGTTCGCGGAAACATTGTTCGATTTGTGCAGGACCAAGGTAGGCTGGTGTCAGGCTGGAGCGGCAGCTGCCACGGCTGTGTGGAGAAATACATGTTCTTCAACATGTCTGTGCTGCAGCCCGTGGAGCAGCTCTCTCTGGCGCAGCTGGAAATCAAGTTCCAGTGGGACATGTTCCGCACACCAAGGTTCCTCCTGGGCCCACAGGCGCTCAGCGTGTCCCTGTACAAGGTGTTGCGTGCGACCCTGAGGGGAGCGAGCCACGAGGCCCACCGCAGGCTGGTGCTGTCCCAGTCGGTGCAGCTGGAACCAGAGGCCGGATCCCTCACCTTGGACCTCACAGCACTGGCACAGAACTGGCGTAAACCGGGTCATAACTACGGCCTGGTGCTGGAGCTGCAGTTACACCCTGTCCACACCTTGGCGACGGACATCTTCATGTCCCAGAACCTGGTGAACTCCGTCCCGTTAGGGCCGACCGTAACCCTCCCACAGTTCCATGCCTCCCTGGTGGTTGTATCCCTGAATCCACTCCAGTGCCGCTCTCGGCAGAAGAGGAGCGCCGTCTATCTGCCGGTTACACCCAGCAACGTGTGTAAGCCGCGCCGCCTCTACATTGAATTCAAGGATGTGGGCTGGCAGGACTGGATCATCGCTCCGCAGGGCTACCTTGCCAACTACTGCCACGGAGAGTGCCCGTTCCCACTGAGCGAGAGCCTGAACGGCACTAACCATGCCATCCTGCAGACTCTGGTGCACTCCCTGGACCCCCACAGCACACCCCAGCCCTGCTGCGTACCCATCCGCCTGTCACCTGTATCCATGCTCTACTACGACAACAACGACAACGTAGTCCTACGTCATTACCAGGACATGGTGGTGGATGAGTGTGGCTGCAGATAAAATGCATTCGGTGTGATGGCTGGTTGGTGGTGTGGATTGTAGAGAAGTTTGAATTGTTGTTTTTAACATTTTTACCCGTAATAAAACGCTTATCCATTGAT

Function

symbol description
gdf3 Predicted to enable cytokine activity. Involved in regulation of epiboly involved in gastrulation with mouth forming second. Acts upstream of or within with a positive effect on nodal signaling pathway. Acts upstream of or within with a negative effect on BMP signaling pathway. Acts upstream of or within several processes, including embryonic morphogenesis; left/right pattern formation; and regulation of nodal signaling pathway involved in determination of left/right asymmetry. Part of protein-containing complex. Is expressed in several structures, including heart primordium; mesoderm; oocyte; somite; and tail bud. Human ortholog(s) of this gene implicated in Klippel-Feil syndrome 3; dextro-looped transposition of the great arteries 3; isolated microphthalmia 7; and visceral heterotaxy. Orthologous to several human genes including GDF3 (growth differentiation factor 3).

NR:

description
growth/differentiation factor 3

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22672 GDF3; growth differentiation factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579813.2 True 1484 mRNA 0.54 2 45533097 45543990

Neighbor

gene id symbol gene type direction distance location
LOC118943614 gdf3 coding downstream 12265 45519847 ~ 45520832 (-)
LOC110501936 LOC106572616 coding downstream 74469 45457226 ~ 45458628 (-)
LOC118943595 LOC106582449 coding downstream 100851 45419885 ~ 45432246 (-)
LOC110502174 LOC106572616 coding downstream 167284 45343530 ~ 45365813 (-)
LOC118943612 NA coding downstream 565963 44965636 ~ 44967134 (-)
LOC110501933 LOC106582484 coding upstream 6864 45550854 ~ 45578906 (-)
LOC110501943 NA coding upstream 38561 45582551 ~ 45587712 (-)
LOC110501932 LOC106582487 coding upstream 158963 45702953 ~ 45726394 (-)
LOC118943596 NA coding upstream 467125 46011115 ~ 46028506 (-)
ints6 LOC106582497 coding upstream 575398 46119388 ~ 46156972 (-)
G1815400 NA non-coding downstream 83936 45389697 ~ 45449161 (-)
G1815402 NA non-coding downstream 99371 45392296 ~ 45433726 (-)
G1815396 NA non-coding downstream 118124 45375493 ~ 45414973 (-)
G1815325 NA non-coding downstream 290084 45242797 ~ 45243013 (-)
G1815463 NA non-coding upstream 2143 45546133 ~ 45546419 (-)
G1815466 NA non-coding upstream 4395 45548385 ~ 45548871 (-)
G1815472 NA non-coding upstream 23791 45567781 ~ 45642292 (-)
G1815475 NA non-coding upstream 32533 45576523 ~ 45576888 (-)
G1814480 NA other downstream 859209 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 979677 44473683 ~ 44553607 (-)
G1812404 NA other downstream 2855337 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2928077 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 3143824 42386822 ~ 42389273 (-)
G1815615 LOC106582489 other upstream 294760 45838750 ~ 45840982 (-)
G1816841 NA other upstream 1681561 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1857132 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1927304 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2518059 48057851 ~ 48064453 (-)

Expression


Co-expression Network