LOC110501943


Basic Information

Item Value
gene id LOC110501943
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45582551 ~ 45587712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470275.2
aagGGACGCTGTGACGTTTTCACAAACCGCTATCCCGGATTCGCCGCCACATCCCGGTACTCTTTTCTCCGCCGCCCTTGAAAGAGAACGTCCTATGTGAAAGATAGCACTAGTTGGTCCCTGGAGACTGCTGTCTGGTTGGAGAGTCACCTGCTCCCCTCCATGGAGACAGACCAGCATGATCAACAGTCGGCTGGAGGGAGTTGGTggttacggttacagaagtcatcaaaagagagcgcctggggaataggagtggagctaggcactgcaggtcctggattaacctctacatcaccagaggaacagaggaggagttggTGGTTGACCCATCAGAGGAGTTGTATTTATGGATGGCTACAGGTCATGACCTTTCCCATCTTCTACGTCTGGGTTCTCTTCATCTGCATATGCTTACATCAAATGTAGCCTATGGCTGGCCGGTTATCCATTTCAAGGGGTTCGCTTCGTGTCAATgtactgtttctctgtttctctgttcttcttctgttgtttatttttttgtgtttttcctCTTTGTGTAAAATATGTTGAGACCTTGTACACATGAAATAAATTGTGATTTGATTGGAAAGATAATAAAGAGAAGAATAAATAGA
>TU2076903
GCCCTTGAAAGAGAACGTCCTATGTGAAAGATAGCACTAGTTGGTCCCTGGAGACTGCTGTCTGGTTGGAGAGTCACCTGCTCCCCTCCATGGAGACAGACCAGCATGATCAACAGTCGGCTGGAGGGAGTTGGTggttacggttacagaagtcatcaaaagagagcgcctggggaataggagtggagctaggcactgcaggtcctggattaacctctacatcaccagaggaacagaggaggagttggTGGTTGACCCATCAGAGGAGTTGTATTTATGGATGGCTACAGGTCATGACCTTTCCCATCTTCTACGTCTGGGTTCTCTTCATCTGCATATGCTTACATCAAATGTAGCCTATGGCTGGCCGGTTATCCATTTCAAGGGGTTCGCTTCGTGTCAATgtactgtttctctgtttctctgttcttcttctgttgtttatttttttgtgtttttcctCTTTGTGTAAAATATGTTGAGACCTTGTACACATGAAATAAATTGTGATTTGATTGGAAAGATAATAAAGAGAAG
>TU2076909
GCCCTTGAAAGAGAACGTCCTATGTGAAATCGGCTGGAGGGAGTTGGTggttacggttacagaagtcatcaaaagagagcgcctggggaataggagtggagctaggcactgcaggtcctggattaacctctacatcaccagaggaacagaggaggagttggTGGTTGACCCATCAGAGGAGTTGTATTTATGGATGGCTACAGGTCATGACCTTTCCCATCTTCTACGTCTGGGTTCTCTTCATCTGCATATGCTTACATCAAATGTAGCCTATGGCTGGCCGGTTATCCATTTCAAGGGGTTCGCTTCGTGTCAATgtactgtttctctgtttctctgttcttcttctgttgtttatttttttgtgtttttcctCTTTGTGTAAAATATGTTGAGACCTTGTACACATGAAATAAATTGTGATTTGATTGGAAAGATAATAAAGAGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470275.2 False 620 mRNA 0.46 3 45582551 45587712
TU2076903 False 537 lncRNA 0.45 3 45582561 45587639
TU2076909 True 450 lncRNA 0.43 2 45582561 45587639

Neighbor

gene id symbol gene type direction distance location
LOC110501933 LOC106582484 coding downstream 3645 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 38561 45533097 ~ 45543990 (-)
LOC118943614 gdf3 coding downstream 61719 45519847 ~ 45520832 (-)
LOC110501936 LOC106572616 coding downstream 123923 45457226 ~ 45458628 (-)
LOC118943595 LOC106582449 coding downstream 150305 45419885 ~ 45432246 (-)
LOC110501932 LOC106582487 coding upstream 115241 45702953 ~ 45726394 (-)
LOC118943596 NA coding upstream 423403 46011115 ~ 46028506 (-)
ints6 LOC106582497 coding upstream 531676 46119388 ~ 46156972 (-)
spopla spopl coding upstream 1282119 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 1454513 47042225 ~ 47061327 (-)
G1815475 NA non-coding downstream 5663 45576523 ~ 45576888 (-)
G1815466 NA non-coding downstream 33680 45548385 ~ 45548871 (-)
G1815463 NA non-coding downstream 36132 45546133 ~ 45546419 (-)
G1815400 NA non-coding downstream 133390 45389697 ~ 45449161 (-)
G1815402 NA non-coding downstream 148825 45392296 ~ 45433726 (-)
G1815488 NA non-coding upstream 4473 45592185 ~ 45595699 (-)
G1815516 NA non-coding upstream 52503 45640215 ~ 45643396 (-)
G1815523 NA non-coding upstream 68845 45656557 ~ 45657002 (-)
G1815544 NA non-coding upstream 108380 45696092 ~ 45697548 (-)
G1815562 NA non-coding upstream 173474 45761186 ~ 45761462 (-)
G1814480 NA other downstream 908663 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1029131 44473683 ~ 44553607 (-)
G1812404 NA other downstream 2904791 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 2977531 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 3193278 42386822 ~ 42389273 (-)
G1815615 LOC106582489 other upstream 251038 45838750 ~ 45840982 (-)
G1816841 NA other upstream 1637839 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1813410 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1883582 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2474337 48057851 ~ 48064453 (-)

Expression


Co-expression Network