LOC118943596


Basic Information

Item Value
gene id LOC118943596
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46011115 ~ 46028506 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959085.1
ATGGTTGTCTTTGTCGCCAGCATGTGGTACTACGAGgcaAACCGGCGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgTAGGCAAAccagtgacccagggaccccacccaggcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGGcaccccacccagacaaaccgggaccccacccaggcaAACCGGCGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccaggcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGGcaccccacccagacaaaccgggaccccacccagacaaaccggcGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccagacaaaccggtggCCCAGGGACTCCCACGCAGACAAACCGGTGGCCCAAGAACCCCACCCAGggaccccacccagataAACCGGCGGCCCAGGGAcccccacccagacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccaggcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGGCAAACCGGTGGCCCAGGaaccccacccagacaaaccggcaAACCGGTGACCCGGGGACCCCACCCAGataaaccggtgacccagggaccccacccagataAACCGGCGGCCCAGGGAcccccacccagacaaaccggcaAACTGGTGACGCAGGGACCCCACACAGACAAACCGGTGACCaagggaccccacccagacaaaccggcGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccaggcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGgcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGGCAAACCGGTGGCCCAGGaaccccacccagacaaaccaGTGACCCAGGGACATCACCCAGACAAAccagtgacccagggaccccacccagacaaaccaGTGACCCAGGGACATCACCCAGACAAAccagcaAACCGGCGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccaggcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGggaccccacccagacaaaccggcGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccagacaaaccggtggCCCAGacaaaccggcGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccagacaaaccggtggCCCAGGGACTCCCACGCAGACAAACCGGTGGCCCAAGAACCCCACCCAGggaccccacccagataAACCGGCGGCCCAGGGAcccccacccagacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccaggcaAACTGGTGACGCAGGGACCCCACACAGACAAACCGGTGACCaagggaccccacccagacaaaccggcGGCCCAGGGACCCCCACCCggacaaaccggtgacccagggaccccatgCAGGCAAAccagtgacccagggaccccacccaggcaAACCGGTGGCCCAGGGACtcccacccagacaaaccggtggCCCAAGGACCCCACCCAGGGGCTCCCATCTCAGGGGCTCCCATCTCAGGGGCTCCCATCTTCAGGGGCTCCCATCTTCAGGGGCTCCCATCTCAGGGGCTCCCATCTCAGGGGCTCCCATCTTCAGGGGCTCCCATCTTCAGGGGCTCCCATCTTCAGGGGCTCCCATCTCAGGGGCTCCCATCTCAGGGGCTCCCATCTCAGGGGCTCCCATCTTCAGGGATTCCCATCTCGGCGGTTCCTCTGTGGCCTGTTGGAGTAA

Function

NR:

description
PREDICTED: foot protein 1 variant 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959085.1 True 2247 mRNA 0.67 14 46011115 46028506

Neighbor

gene id symbol gene type direction distance location
LOC110501932 LOC106582487 coding downstream 284721 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 423403 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 432209 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 467125 45533097 ~ 45543990 (-)
LOC118943614 gdf3 coding downstream 490283 45519847 ~ 45520832 (-)
ints6 LOC106582497 coding upstream 90882 46119388 ~ 46156972 (-)
spopla spopl coding upstream 841325 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 1013719 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 1058365 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 1141897 47170403 ~ 47260466 (-)
G1815781 NA non-coding downstream 1441 46009456 ~ 46009674 (-)
G1815731 gbp non-coding downstream 15074 45965617 ~ 45996041 (-)
G1815732 NA non-coding downstream 17902 45962342 ~ 45993213 (-)
G1815772 NA non-coding downstream 28700 45981643 ~ 45982415 (-)
G1815703 NA non-coding downstream 68195 45942401 ~ 45942920 (-)
G1815899 NA non-coding upstream 67 46028573 ~ 46028927 (-)
G1815902 LOC106582500 non-coding upstream 5608 46034114 ~ 46064332 (-)
G1815909 NA non-coding upstream 15829 46044335 ~ 46045898 (-)
G1815931 NA non-coding upstream 61146 46089652 ~ 46117078 (-)
G1815949 NA non-coding upstream 101876 46130382 ~ 46130681 (-)
G1815615 LOC106582489 other downstream 170133 45838750 ~ 45840982 (-)
G1814480 NA other downstream 1337227 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1457695 44473683 ~ 44553607 (-)
G1812404 NA other downstream 3333355 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 3406095 42603998 ~ 42605768 (-)
G1816841 NA other upstream 1197045 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1372616 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1442788 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2033543 48057851 ~ 48064453 (-)
G1817668 NA other upstream 2240281 48268787 ~ 48291496 (-)

Expression


Co-expression Network