ints6 (LOC106582497)


Basic Information

Item Value
gene id ints6
gene name LOC106582497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46119388 ~ 46156972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959427.1
GACACAGAGCTCTCAGTGTAGGGAGAAACAGGGATGAGATGTAATAGGAAACTTGGTTTCTATGAAATTTTGTAATATTTacaagaaaataataataataacataaagAATCATCAAAAATCCCTCTTTAAGTTAATAGCCTGCCCATAGGATTTTTAGATTTAGTTCAGGTTATTGAAGGGCATTTACACTCACTATTCTGACACTTTTGTAAAGATGTGTGAggcagttagttagctagctagctagctaaggcgGCAGGAGgagaacaaaatattttttttttcagttttgaCCGGTTGCACTGACACCAAGTCCATGCAGAACGTGTCATCACCAACACAATGCCCGTGTTACTTTTTCTGATAGACACGTCCGCGTCAATGAACCAGCGCACCCATCTGGGCACTACCTATCTGGACATTGCAAAAGGCGCTGTTGAGACTTTCATGAAGCTTAGAGGCAGAGATCCGGCGAGCCGAGGGGACCGGTATATGTTGATAAATTTTGAGGACGTTCCCCTCGGAATCAAGGCTGGATGGAAAGAGAGCCATGCCACATTCATGACAGAGCTGAGGAACCTTCAAGCAGCAGGACTCACAACTATTGGCCAGTCTTTGAGGACCGCTTTTGATTTGCTCAATCTCAATAGATTAGTGTCTGGGATAGACAACTATGGACAGGGCAGGAATCCCTTTTTCCTGGAGCCGTCCATCATAGTGGCCATCACCGACGGCAACAAGCTGACCAGCAGTGGCGGAGTCCAGGATGAGctccacCTTCCCCTGACCACTCCTCTGCCGGGCAGTGAGCTGACCAAGGAGCCGTTCCGCTGGGACCAGCGTTTGTTCTCCCTGGTGCTGAGGATCCCTGGACACGCCACTGTAGAGCCTGAACCACTGGGAGGGGTCCCCCCCGACGACTCGGCCATCACCCCCATGTGCGAGGTCACCGGAGGTCGCTCCTACAGTGTGTTCTCCCAGCGCATGTTGAATCAGTGTCTGGAGTCTCTACTGCAGAAGATCCAGAGTGGAGTGGTCATCAACTTTGAGAAGACGGGCCCGGACCCCCCTCCTGGAGAGGATGAGACCCTGAAGCCCGGCCCCCAGTCGTGGCACTGCTGCCACAAGCTGATCTACGTACGACCCAACCCCAAGACCGGTGTGCCCATCGGACACTGGCCCATTCCTGAAGGCTTCTGGCCCGACACGAACTCCCCCACCCTGccccctCGCTCGGCCCACCCCCACGTGCGTTTCTCCTGTCTGGACTCGGAGCCCATGGTGATTGACAAGGTTCCCTTTGACAAGTACGAGCTGGAGGCTTCACCTCTCACACAGTACATCCTGGAGAGGAAGTCCCCTCATACCTGCTGGCAGGTGTTTGTAAGTAACAGTGCCAAGTACAGTGACCTGGGCCAGCCCTTTGGCTACCTGAAGGCCAGCACGGCTCTCAACTGTGTCAACCTCTTCGTCATGCCCTACAACTACCCTGTTGTACTGCCTCTACTGGATGACTTGATCCGGGTGCACAAGTTCAAGCCCACCATTAAATGGCGTCAGTCATTTGAGAACTACCTGAAGACCATGCCTCTTTATTACATTGGGTCCCTCCGGAAGGCGCTAAGGATCATGGGAGCTCCTAACCTCCTGGCCGACAACATGGAGTATGGTCTGAGTTACAGTGTGGTGTCCTACCTCAAGAAGCTCAGCCAGCAGACCAAGATAGAGTACGAGCGGCTGATAGCATCTGTAGCTAAGAAGGTGGTAGCGGAGGGTGGCATCAAGGTGCGTGACCGCGGTGGGGACATCTCCCTGGCCCAGCGCAGAGACTTCACTCAGCTTCTGGCCAGCATCACAGGAGAGACGGCCGCCCTGCCCCTGGAGCTAAACTCTAAAGAGTTCTCTGGCTTTCAGCTGGCTCCTCTCAACAAGAGTCTGAAACCTCAGGGTTTCCGGAACGCCTACGACATTCCCAGAATGCACCTCCTGGATCAGCTGAGCCGCATGAGGAGGAACCTGCTCAGCACCACCTGTCTGCTCCGAGGACAggacacagACCAGCTGCACAGTGTGCCCATCGCCCAGATGGGGAACTACCAGGACTTCCTCAAAGCCCTTCCCCAACCCCTCAGAGACGCAGACCCTGAACAGCCCAAACGCCTGCACACCTTCGGAAATCCTTTCAAACTGGACAAGAAGGGGATGATGATTGACGAGGCCGATGAGTTTGTGACGGGTCCCCAGAACAAGGGCAAGCGTCCGGGGAGTGACTCCAACATGCACGGGGTCGGGGGTGGGGGTCCTAAGAGACGACGGTGCATGTCCCCTCTACTGCGCCCCGGCAGAGCCTATTCGCCCCCCGTCAGCCCTGCAGCCAGCCCCTTCAGACCCCCCCTCGCCGaGTGCGACCAGAATGAGTCAGACTCAGAGGCTGTTTTTGGAAACCTCTACAACCCAGAGACGTGTGAGACCGGGACAACGGTCCAACCAGGAGAGATCCTCTCTGGACCCCTTCTAGACGGCCCCGGCACAGGGAACCGCATGGAGGCTGATGGGGACACTGAGGAGGAGAACGGACTTCCCAGGGAGGTAGAGCTCTCAGAGGGCagtgaggatggaggagagactgggggTGTGGTGGAGGAGCAGCGCCCGGCCCGGTACCCCTCCCCCGGGGAGCTGAAGAAGGTGATGAACAGCGAGAGTCTGGAGGTCAACACCGAACTACGAACCCTCATCACCAAGGAGATACGGAAACCCGGGAGACaCTATGAAAAAATCTTCTACTTCCTGAAGCAGATCCAAGGAAGCTTTGACACACGGTTGATATTTCTCCAGAACATTATAAAAGAAGCTGCAAGGTTCAAGAAGCGGGTGCTGATAGAACAGCTGGAGAACTTTCTAGAAGATATCCATAACAGAGCCAACAATATGAACCACCTAGACGGGTTCTAATGGACAACTCTTCACTCCCCGGACCCTCTgacctaacccctcctccccaccctcagCCCTCAACCTGCAGCCCTTACCCAGGCTGAAATATTCCTATAGAGAAGGGGCATATACAGTGTATGAACTAACCCAAGCAATGAAATGAGTGCTgttggcctgtctgtctctgtcagtgtaTACTGTGTGACGCGTGTCTCATCAGTGATGGTAGGGTGAACTGATATTGCTAAGGGAGGGGGTTCAAATTAGATTGTAATAAGTTTCCAACAACCTCAGGGCCAAAAGAGAAACACTGATGTTTTAGGTTTCAAATTAATCTTTAGGTGgcttcatgttttttttcttccattttctctttctagtcatctccctctctcgttctagtcatctccctctctcattctagtcatctccctctctcgttctagtcatctccctctctcgttctagTCATCGCCCTCTCTCGTTCTAGTCATCGCCCTCTCTCGTTCTAGTcatcgccctctctctttctagtcatcgccctctctctttctagtcatcgccctctctctttctagtcatcgccctctctctttctagccctctctctttctagtcctctctttctagtcctctctct

Function

NR:

description
integrator complex subunit 6-like

GO: NA

KEGG:

id description
K13143 INTS6, DDX26; integrator complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959427.1 True 3579 mRNA 0.53 18 46119388 46156972

Neighbor

gene id symbol gene type direction distance location
LOC118943596 NA coding downstream 90882 46011115 ~ 46028506 (-)
LOC110501932 LOC106582487 coding downstream 392994 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 531676 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 540482 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 575398 45533097 ~ 45543990 (-)
spopla spopl coding upstream 712859 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 885253 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 929899 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 1013431 47170403 ~ 47260466 (-)
cfap65 cfap65 coding upstream 1320656 47476398 ~ 47553609 (-)
G1815931 NA non-coding downstream 2310 46089652 ~ 46117078 (-)
G1815902 LOC106582500 non-coding downstream 55056 46034114 ~ 46064332 (-)
G1815909 NA non-coding downstream 73490 46044335 ~ 46045898 (-)
G1815899 NA non-coding downstream 90461 46028573 ~ 46028927 (-)
G1815781 NA non-coding downstream 109714 46009456 ~ 46009674 (-)
G1815962 NA non-coding upstream 12417 46169389 ~ 46170144 (-)
G1815963 NA non-coding upstream 14917 46171889 ~ 46172337 (-)
G1815978 NA non-coding upstream 38791 46195763 ~ 46229192 (-)
G1816002 NA non-coding upstream 104901 46261873 ~ 46262108 (-)
G1816012 NA non-coding upstream 117544 46274516 ~ 46275167 (-)
G1815615 LOC106582489 other downstream 278406 45838750 ~ 45840982 (-)
G1814480 NA other downstream 1445500 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1565968 44473683 ~ 44553607 (-)
G1812404 NA other downstream 3441628 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 3514368 42603998 ~ 42605768 (-)
G1816841 NA other upstream 1068579 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1244150 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1314322 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 1905077 48057851 ~ 48064453 (-)
G1817668 NA other upstream 2111815 48268787 ~ 48291496 (-)

Expression


Co-expression Network