G1773708


Basic Information

Item Value
gene id G1773708
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8361838 ~ 8413228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2031272
CTGCTAGTGTCTTaccgaccgttccacaggtgcaggttcattcattgtttatggttcattgaacaagcatgggaaacagtgttataaccctttacaatgaagatctgtgaagttgatTCATGATTCTATGGAGAAATTGACTGCACATGCATTCTCAATGAAGTAAGCGTCACATGACAATAATATAGAAGAGCCAACTGAAGAGTGCAACAGAATATTTATTATTGCTCCCATCTGTCACATGGACTTATGTTAGCGTTTTCAAAAGCTTTAAAACTGGCAGCGATGATGTTCAAAGTAGTCCAACCTACAGAATAAACCATCAGACCACTTCAACTACATTAACATTCTCAGTAATGGTTAGagatgtatttttttatataccttAGTTGAACGCAATGACTGTCAGTCgctctggattagagtgtctgctgaatgaccaaaatgtaaagcGTAAAAACAAACACACTTGTAAAGCATACTGGTATTATTCGAATGACCTCCGCCACATACAAATATGGTCGGTGCGGACCAGAGTCAAATCTGAACAAATCATAGACGCCTGGGCTGTTCCCCAAGATTGAACTTCACATTACAATACAGCAGTttagtacagtagaacacagtatGGTACAGGACAGTCAAGTTTTATTCAGcagagtagattacagtagagtacagtacattacagtacagtaaaaacagtatagtgcagtacagtTTAGTTCAGTAAAGTACATTAGAGTAAAGTAGGGTACAATACAGTACCATACTGTACTCTGTTTCTTTAC
>TU2031271
GAATATTTATTATTGCTCCCATCTGTCACATGGACTTATGTTAGCGTTTTCAAAAGCTTTAAAACTGGCAGCGATGATGTTCAAAGTAGTCCAACCTACAGAATAAACCATCAGACCACTTCAACTACATTAACATTCTCAGTAATGGTTAGagatgtatttttttatataccttAGTTGAACGCAATGACTGTCAGTCgctctggattagagtgtctgctgaatgaccaaaatgtaaagcGTAAAAACAAACACACTTGTAAAGCATACTGGTATTATTCGAATGACCTCCGCCACATACAAATATGGTCGGTGCGGACCAGAGTCAAATCTGAACAAATCATAGACGCCTGGGCTGTTCCCCAAGATTGAACTTCACATTACAATACAGCAGTttagtacagtagaacacagtatGGTACAGGACAGTCAAGTTTTATTCAGcagagtagattacagtagagtacagtacattacagtacagtaaaaacagtatagtgcagtacagtTTAGTTCAGTAAAGTACATTAGAGTAAAGTAGGGTACAATACAGTACCATACTGTACTCTGTGCTCTATGTTTCTTTACTGACAGAGGTCTATGATTAGTTCCAATTTGGTCCGGACCAAGAATCAATGTCCTTGGACAATGAAATGAAAGCCGGCCCTGACTGCCCCAAAAACAATACGACCCCAAAAATACGGCCAAAAGACAACGCTATCGGTAAATGCTAAGTGGGAAGTGTAGGCCTATACTTGTTCACTACAGTACTCCCCCACAAATCTAAAAGGAGGATCCGTGGAATTCTGGGCTAGTAGGAGATTTCACCATATTGCTTAGGGTACCAAGTCATGATGTTACGGTCATAGCTGCCAACCcatttctgacaccaatgtagcgACAGACAAACCCGGGTTTTGGCGTACACCATACTGGACCAATCATACACGTCTATATTTGGGTCAAATCAAGGCCAATCCGAACCAATCACAGATGTCTTTTTTGGGGGGTCAAATCAAGGCCAAATATAGACGACAAATCAAGGCACCAAAAAAAAACCCACCACCGgtcaagacaacaaaaaaaaagacgcCCAGAAGACATCGCCTAATGCTTAGTGGGCAGTTACATGGCAAGATTTAAATATTCCCCATGTAATGTTAACAGGGTGCCAACATGGTTGAAATAGAATGTTACAGTGTCGtgtaaatgcatcataatgcagaAACCACAATGGCAACTAGGTAAATACATGGCTCTGATGGTAACTATAGGGGAGAATAATAACAACATGTTGTATCCATCCACTCCCAGAGACCAGCAGCAATCCCCACAAGTCACACAGTACAACATCCGAGACAGAAAGCGTAGATGCTGCCACACAGCCCATGATTTGAGTTATTCTGCAAAAACTTTTATTGAACAAAAGTATTATAATTCTCACCACGTCATTAGCGGCACAGTCCCGTAGGTTGGATCGAAATGATTCATATTACGTACCTCATCTTCTTCtgaatatatacatacagtgggaaCAAGAATGAAATAACAATGCTCAATAACATTCAGATATATCAACTTGGAAAAGCTGAGAACCCCATGATCGATACATTGGTAAACAGACGCACAGAGCAAAAAGcaaatcaaaacaacagtttaagTACTCTTGAATTAGTGCCTGCCATCAGctacataaacacatacagtgcattcagaaagtattcagaccccttgacttctttcacattttgttcagttatagccttattctaaaattgattaaatagatataaatcttcaatctacacataataccccataatgacaaagcaaaaacaagtttttagaaatgtttgcaaatgtattacaaataccaaaaaaaatgactgcagcattgattgtccccaagaacacaggggcctctatcactcttaaatagaagaagtttggaaccacagaGACTCCTcctggagctggccgcccggccaaactgaggaaTCGGGGAGAAGAGCATTTGTCatgaaggtgaccaagaacccgatggtccctctgacaaagcaccagagttcctctgtggagatgggagaaccttccagaaggacaaccatgtctgcagcactccaccaatcaagcttttatagtagagtggccaaaccctcctcggtaaaaaggcacatgacagccagcttggagtttgcaaaaaggtacctaaagactcgcagaccatgagaaacaagattctctggtccgattaaaccaagattgaactcttatagcctgaatgccaagcatcatgtctggagaaaacctggcaccatccctacggtgaagcacggtggtggcagcatcatgctgtggggatgtttttcagctgcagggactgggagactagtcaggatcaagggaaagatgaacagagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2031272 False 791 lncRNA 0.38 2 8361838 8413228
TU2031271 True 2420 lncRNA 0.42 2 8410302 8413016

Neighbor

gene id symbol gene type direction distance location
LOC110501321 fhl2 coding downstream 51369 8294881 ~ 8310469 (-)
mfsd9 mfsd9 coding downstream 187960 8162076 ~ 8173878 (-)
inpp4aa LOC106586779 coding downstream 202323 8100745 ~ 8159515 (-)
si:dkey-4e7.3 LOC106582031 coding downstream 268972 8083817 ~ 8092866 (-)
mrpl30 mrpl30 coding downstream 364978 7992285 ~ 7996860 (-)
LOC110502043 LOC106581982 coding upstream 30379 8443607 ~ 8492893 (-)
LOC110501323 LOC106581977 coding upstream 211587 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 coding upstream 323947 8737175 ~ 8758540 (-)
LOC110502107 grk1 coding upstream 350796 8763292 ~ 8768047 (-)
LOC110501327 LOC106581971 coding upstream 356940 8770168 ~ 8783060 (-)
G1773693 NA non-coding downstream 32891 8323947 ~ 8328947 (-)
G1773604 NA non-coding downstream 195876 8164485 ~ 8165962 (-)
G1772031 NA non-coding downstream 201564 8159991 ~ 8160274 (-)
G1772025 NA non-coding downstream 208102 8152472 ~ 8153736 (-)
G1771999 NA non-coding downstream 268212 8093367 ~ 8093626 (-)
G1773773 NA non-coding upstream 66785 8480013 ~ 8482406 (-)
G1773851 NA non-coding upstream 195489 8608717 ~ 8608923 (-)
G1773855 LOC106581978 non-coding upstream 201443 8614671 ~ 8615016 (-)
G1773857 NA non-coding upstream 203374 8616602 ~ 8616808 (-)
G1773825 NA non-coding upstream 206219 8619447 ~ 8623484 (-)
G1771426 LOC106582012 other downstream 897146 7462213 ~ 7464692 (-)
G1771092 NA other downstream 1105121 7251784 ~ 7256717 (-)
G1769618 NA other downstream 2401023 5960150 ~ 5960815 (-)
G1769281 NA other downstream 2536531 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 4587829 3447431 ~ 3774567 (-)
gpr161a gpr161 other upstream 645748 9044945 ~ 9063520 (-)
G1774133 NA other upstream 688524 9101752 ~ 9123249 (-)

Expression


Co-expression Network