G1773825


Basic Information

Item Value
gene id G1773825
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 8619447 ~ 8623484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2031398
ttgaatgagtaggtgtgtccaaacattttactggtactgtataacttAACGTGTTTTGCTGTTGTGAAGTGTTGTCTTTCTAGAGTTCTGGTTGCTCTTCTTCCTTAAAATGACTTAAAGGACAGTCCACAGTTTAATggtggatgtttttttttttttaatggctcTCATGGGGTGGTAAATTAATCTTTGAGAAAATGAGCAATGGTCTGCACTGAATGTCTGAAAACACGTCCATACCAAACACACACTTCTGAACATGTACAAACTCGGCACACACCCCTGACAACCCGTAACAAAAACTTGAACTTTACTTCAAAATGTACCTCAGTACCACTTCAATGACAATACACATGCTCATACATACAGGTACATGTATCTCAATACAGACATGCTGGAACTACACCAAACACTCACCACCTCAGTATTACCTAATCAAGATGGTACattgtgttttaaaaaaaaatctacaacaGTCACACATTTTTCTGTGTTCAACATTCCTTAAATGTCCTCTAGTCTTATTTCAAAGTCTTATTTGATGGTGTTGTTGTCATCGGGGTTTTGATTGCTGTTGATGCTGCTGCTGTGCTTTATGCCCAATCACTCTTTGCTCTTCTTTTCTCATCTCCCAAGCTGTACCGGACCACTTGCCAACTCATAAAGAGGTTGTCATACTCCCACTTAGGTCTTtaagactggctggctggttgccaCTTCAAGGGCATGCACAGTTCTGTGTCTGGCAGATAGTTAGGTACCAAACCCAGGAAAACCCTTTGGTTGCCCGTTCTTTGGCCTAATCCAGTACAACGATGTCCTTTTTAAGATTTGTGAACACCAAAGGATGCAGGGCTAGGCTAGCGGATAGGAGTTAGGGGGTAAGAGAGGACTCGCAAAGCATTCTTTCAACAGCTGTAACCCTGTGCCTAGTAGCCAACCGGACACTGGGTTGCCTTTCAAAACACCCAAAGACTGATCttacacatactgtatgctaTCCATGTAACTGCAGTGTCATTGCTGTGGTTTTTATTGCTGATTTAATTGTTTTAATAGTTAAGATTTACAGAAAGTTGTTAGTCACCTGATAGTGTTGCTCTAACCGTCCAGTGTTCTGTTAGTGGCGGGCTGGGGTAGGAGAGGTCACTAGTCAAACTCCCTTACTTTCCAGTGTCCACCCCATGCCAAAAGGGAATTGAACCAACACCCTCTCTCTGACGTCTCTTTAAAAGCAGCTGTAATTACTACGATGATTGACCTGCCTCTTTAAATGAATGTAATCGCACCACACCTCCCACTGTCAAAGCCAAACCTCTCCCTGGGACAGTTATATCTACGAGcacactacagatgtaggatcttaatttgatccagtttgctacagcaggaaaataatcctgcacaaTGGGAAATGTGAatttattatgtggattataataaattgactttttgtaggggttgacatgtcaaagtgaaaactacaaacttcagaagcttttttttaaacctcaaatacgcTACGagttttaaatgtcctgcatttCAAGACCAGTTCTCcttcaacagggtgatcaaattaagatcctagatATGTGCCATAGATGGTCAAGGGATTCAGTCCGCAGGGTTCGGTAGCTGGACTGCCTCCCAGGCACGTCATGCTAATATGGTTTGAGGCCTTCAACAGAGCATGGTCTAGTAACTGAAGCCTACCATTCCCTATGTCTTTACCGTTCTCATTTTGACTGAATCCTCCAATATCTTTCTGAAAGTACTCTTTTGCCTGGGCTTGCAGCAGGCTGCCACGGTGCGCTGCCAGAGACCTTTTCTTATTATGGCAGGGATTTGAAGCAGTAACATCTCCAGACTCATTCTTTGTCTGGCTTTAATGTCTTCCTTGTTTACACTGACTCTGTGCCAGACCTGCCTGCAGTGCGTTTCAGCTagctgtcgtgtgtgtgtgtgtgtaggagaggaGGATAACTCAGAGATCCTATAGATCATCCTATATTGCTCTATATTCTATGGGATCACTATCTGGCCATGCTAGAATGGACAGCGGGGGCTGTTCTTTCCAACCACAAATCCGCTTACAACTACTAAGCTTCACCTTTATCCCAAGCTGAGTCTCCTATAAGACCAAACAGATCATGCACTTGTTGTCAATCAGATATGCCATTACGGCCACTGTAGTCCTTTCTGTAATGGCCAGATGGTGACCATTCCCTGGGTAGGGACAACTGGGAGGGGTTGACATTGGCAGCCATAGTGACATAATTCAAAGAAgagatttgtgtgtgttttgtttgtttagtttTGCGTTGTGATATTCAGGAAAGTGTTGCTGTGCCCTTGCTCCAGGAACAGTGCTTAACCAGGGTTGAGGAAACAAATCGATCCGGTCGTAAACATGGCAGTCAAACGCTGCTTGGAATATAGAGGCGTCTGCTGAAGAGATTGTTGTTGTAATCAAGTGAAGAGAGACTGAACAGGAATACCATTTAGAGTTGGAGGCATTTTAAATATGATTTAGCTACCTAGGATCAATGACAGTGTTAATAACAGTGCAAACCCTTCCCAACCGGTGTGACAGACCATTAGCTTGGGGAGCCAACGCAGGTCTTTTAGGTTTTAGGCAAGGTTACTCGGCACACAGGCATGGTTCGGAAGAACTGTTGCACCGGCACGCCAGGCAAGCGAAATATTTTGAGCCACATCTGCTATCTCATTAACACATGGCTTGAAGGAGCCAGACACACCGCTGCGTCAAATGATTTCCCACCTCTCACTGAGAGATCTAACAAAGGGAAACAGAGGGGGGGCTTTGATGAAACTGTCTGGAATGGTCTCGACTCACACCACTATCATAAGTATCGTCTCTGATTCATGCCCATGCATCATTATTGAAGTGTTCAAATCATTTAATATAATTGTTATGTTTGTGATTAACACATTGACAGtgttaaaaaattaaaataaaaaaaaagatacaATAACTTTGTTTCTATTCCAATGCACAGAACAGTCAAATCTATCCGGAGCAAGGATAAGAGTCTTAAACTGTCCATGTATGTGTACTTGTCTGGATCCCAATTAGcgtttgcagaagcagcagctactcttcctggggtccacaaaacacgacaagtaacaaaacactaatagacaaggacagtcacacattTTAATTACAACGATGATAGACAAACAGTACAACAAAAAagaatacaaacaatacaactaaaaCGTTGTCTGTACTGTGCTTTACTCTGTACTTTCCTGTACAAAAAAACAGCATCCAAGATATAAGATTTTTCTACCTGCGTTGTGCAAGTGTATATTGTGTGCGTAGGGAAATTGTATCCAGCTGGAAACGAGAGCAGCAATTATTAGTTCCGTAGAAGCACTTCTTGATCAAATGCAATGCCTTTGGCAACAGCATTGAAATCTTGATACTGTGCCAAATGTAATTTGTGGGTGGATATGTTTCTTATAGCAGGTATTTTTAAGGTGCTATATGTTCCCTTCAGGGGGGTGTTATAGGATAAAGATGACCAACGTATCTGTATggaccatagagaatgatagaggacgCTTCTTTGTATCTATCTCATTATGGTGTCTGAGCACACGGGCGGCATCATTGAGGCCATATCCATTTGAGTTGGTATGCAAACTGCCACCTaaagtgtgttgtttgaacagatATAAAGCCAAGGTTGCCGATTTTACATCCACCTGCatttatggaatgtttgctcacaagtataattcattggctgattgcctcctgatgacctggatggaagTATGTGATCCTCCTTAACCACCTAGTTAACTACTTCAAAACGAGGGCATTTTTCAATGGTGTTGCCCATGCTAAAATAGGCTTTTGGGAACTAGAGTCCTCTTATCATTCTCTGTGGTAAGGATGGACACGCCAGGTGCATTGTGTTCAACACAGAGAAAGTAGTTTTGGAGATCACTGCTTAACTTGATCCCTCCTCCAGTCGCTCTGTACTCTCTTCTTCTGTC

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2031398 True 4038 lncRNA 0.42 1 8619447 8623484

Neighbor

gene id symbol gene type direction distance location
LOC110502043 LOC106581982 coding downstream 126554 8443607 ~ 8492893 (-)
LOC110501321 fhl2 coding downstream 308978 8294881 ~ 8310469 (-)
mfsd9 mfsd9 coding downstream 445569 8162076 ~ 8173878 (-)
inpp4aa LOC106586779 coding downstream 459932 8100745 ~ 8159515 (-)
si:dkey-4e7.3 LOC106582031 coding downstream 526581 8083817 ~ 8092866 (-)
LOC110501323 LOC106581977 coding upstream 1331 8624815 ~ 8684792 (-)
LOC110501325 LOC106581976 coding upstream 113691 8737175 ~ 8758540 (-)
LOC110502107 grk1 coding upstream 140540 8763292 ~ 8768047 (-)
LOC110501327 LOC106581971 coding upstream 146684 8770168 ~ 8783060 (-)
LOC110501332 LOC106581974 coding upstream 175261 8798745 ~ 8807833 (-)
G1773857 NA non-coding downstream 2639 8616602 ~ 8616808 (-)
G1773855 LOC106581978 non-coding downstream 4431 8614671 ~ 8615016 (-)
G1773851 NA non-coding downstream 10524 8608717 ~ 8608923 (-)
G1773773 NA non-coding downstream 137041 8480013 ~ 8482406 (-)
G1773710 NA non-coding downstream 160471 8408496 ~ 8458976 (-)
G1773886 NA non-coding upstream 55891 8679375 ~ 8679685 (-)
G1773906 NA non-coding upstream 79799 8703283 ~ 8703505 (-)
G1773966 NA non-coding upstream 181855 8805339 ~ 8805639 (-)
G1773936 NA non-coding upstream 197370 8820854 ~ 8826155 (-)
G1773938 NA non-coding upstream 202817 8826301 ~ 8827680 (-)
G1771426 LOC106582012 other downstream 1154755 7462213 ~ 7464692 (-)
G1771092 NA other downstream 1362730 7251784 ~ 7256717 (-)
G1769618 NA other downstream 2658632 5960150 ~ 5960815 (-)
G1769281 NA other downstream 2794140 5800761 ~ 5825307 (-)
fgf14 fgf14 other downstream 4845438 3447431 ~ 3774567 (-)
gpr161a gpr161 other upstream 435492 9044945 ~ 9063520 (-)
G1774133 NA other upstream 478268 9101752 ~ 9123249 (-)

Expression


Co-expression Network