G1777196 (LOC100136012)


Basic Information

Item Value
gene id G1777196
gene name LOC100136012
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 11841073 ~ 11843059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2035106
cacaaatccatatatacagtggggggaacaagtatttgatacactgcccaTTTTGCAGGtcttccctacttacaaagcattttcaactgtgagagacggaatctaaaacaaaaatccagaaaatcattgtatttttaagtaattaattagcattttattgcatgacataagtatttgatcaccctaccaaccagtaagaattccagctcccacagacctgttagtttttctttaagaagccctcctgttctccactcattacctgtattaactgcacctgtttgaactcgttatctgtataaaagacacctgtccacacactcaaacctctccacaatggccaagaccagagagctatgtaaggacatcagggaaaaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggcgcaattattagaaaatggaagatgttcaagatgacggtcaatcaccctcggtctggggctccatgcaagatctcacctcgtggggcatcaatgccCAGAACTACTTGGCAGGACCTGGTCAGTGAcatgaagagagctgggaccacagtctcaaagaaaaccattagaaacacactacgccgtcatggattcaaatcctgcagagcacgcaaggtccccctgctcaagccagcgcatgtccaggcccgtctgaagtttgccaatgaccatctggatgatccagaggaggaatgggagaaggtaatgtggtctgatgagaaaaaatagctttttggtctaaactctactcgctgtgtttggaggaagaagaaggatgagtacaaccccaagaacaccatcccaaccgtgaagcatggaggtggaaacatcattctttggggatgcttttctgcaaaggggacaggacgactgcaccgtattgagggggaggatggatggggccatgtatcgcgagatcttggccaacaacctccttccctcagtaagagcattgaagatgggtcgtggctgtgtcttccagcatgacaacgacccaaaacacacagccagggcaagtaaaggagtggctccgtaagaagcatctcaagtcctggagtggcctagccagtctccagacctgactcaatagaacatctttggagggagctgaaagtccgtattgcccagcgacagccccaaaacctgaaggatctggagaagttctgtatggaggagtgggccaaaatccctgttgcagtgtgtgcaaacctggtcaagaactacaggaaacgtatgatctctgtaattgcaaacaaaggtttctgtaccaaatattaagttctgcttttctgatgtatcaaatacttatgtcatgcaatacaatgctaattaattacttaaaattcatacaatgtgaatttctggatttttgttttagattctatCTCTCAAAGTTGAagtatgataaaaattacagacctctaaatgctttgtaagtaggaaacactgccgattttgcaggttatcaaatacttgttctccccactgtatatacatacatacatacatgaaaCCACAcaaatccatatatatatatatatatatatatatatatatatatacacatacatgaaACCACAcaaatccatatatatatatacacatacatgaaACCACAcaaatccatatatatatatacacatacatgaaACCACAcaaatccatatatatatatatatatatatatacacatacatgaaACCACAcaaatccatatatatatatacacatacatgaaACCACAcaaatccatatatatatatatatacacatacatgaaACCACAcaaatccatatatatatatacacatacatgaaACCACAcaaatccatatatatatatatatatatatatatatacacatacatgaaACCGCAc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2035106 True 1912 TUCP 0.40 3 11841073 11843059

Neighbor

gene id symbol gene type direction distance location
LOC110501383 LOC106581884 coding downstream 21862 11816250 ~ 11819211 (-)
tns1b LOC100286503 coding downstream 49504 11486908 ~ 11791569 (-)
igfbp5 igfbp5 coding downstream 786481 11039501 ~ 11054592 (-)
LOC110501381 NA coding downstream 856859 10977273 ~ 10984214 (-)
col5a2a LOC106581929 coding downstream 1000541 10775267 ~ 10840532 (-)
nemp2 LOC106581926 coding upstream 20446 11863505 ~ 11874073 (-)
ofd1 ofd1 coding upstream 170608 12013667 ~ 12025374 (-)
LOC110501393 LOC106581920 coding upstream 188023 12031082 ~ 12034892 (-)
egfl6 egfl6 coding upstream 194771 12037830 ~ 12059560 (-)
LOC118936315 NA coding upstream 261005 12104064 ~ 12105954 (-)
G1777152 NA non-coding downstream 61359 11779496 ~ 11779714 (-)
G1777147 NA non-coding downstream 64258 11776376 ~ 11776815 (-)
G1777119 NA non-coding downstream 98228 11742579 ~ 11742845 (-)
G1777118 NA non-coding downstream 98768 11741851 ~ 11742305 (-)
G1777116 NA non-coding downstream 100881 11739877 ~ 11740192 (-)
G1777220 NA non-coding upstream 51269 11894328 ~ 11894624 (-)
G1777247 NA non-coding upstream 92891 11935950 ~ 11938037 (-)
G1777250 NA non-coding upstream 101753 11944812 ~ 11945033 (-)
G1777259 NA non-coding upstream 116106 11959165 ~ 11959371 (-)
G1777285 NA non-coding upstream 193245 12036304 ~ 12036629 (-)
fundc1 fundc1 other downstream 2103217 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 2549098 9289279 ~ 9291975 (-)
G1774133 NA other downstream 2717824 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 2777872 9044945 ~ 9063520 (-)
LOC110502107 grk1 other downstream 3073026 8763292 ~ 8768047 (-)
G1777286 NA other upstream 198049 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 425158 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 777523 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 1325721 13168780 ~ 13172979 (-)
G1778224 NA other upstream 1436221 13279280 ~ 13330495 (-)

Expression


Co-expression Network